ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 525 e-146
2gb|AY112158.1| Zea mays CL4569_1 mRNA sequence 303 3e-79
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 2e-22
4gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 115 2e-22
5gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 115 2e-22
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
7gb|DQ226829.1| Boechera divaricarpa isolate SLW-C-A05 mRNA sequence 54 5e-04
8gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete se... 50 0.008
9gb|AC124358.4| Mus musculus BAC clone RP24-491B24 from chromosom... 42 1.9
10gb|AC105446.4| Homo sapiens BAC clone RP11-395B7 from 7, complet... 42 1.9
11gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome... 42 1.9
12ref|NM_001035931.1| Arabidopsis thaliana endopeptidase Clp AT1G0... 40 7.7
13ref|NM_100782.3| Arabidopsis thaliana endopeptidase Clp AT1G0913... 40 7.7
14ref|NM_188892.2| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
15ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.7
16gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, com... 40 7.7
17emb|Y17872.1|EAY17872 Eubacterium acidaminophilum orfS, orfR, or... 40 7.7
18gb|AY136442.1| Arabidopsis thaliana ATP-dependent Clp protease p... 40 7.7
19emb|AJ621739.1| Gallus gallus partial KIF3A gene for kinesin-lik... 40 7.7
20emb|BX930233.2| Gallus gallus finished cDNA, clone ChEST587f11 40 7.7
21ref|NM_059999.2| Caenorhabditis elegans T08G11.4 (T08G11.4) mRNA... 40 7.7
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
23emb|BX842538.1|CNS0ADRO Arabidopsis thaliana Full-length cDNA Co... 40 7.7
24emb|BX842534.1|CNS0ADQM Arabidopsis thaliana Full-length cDNA Co... 40 7.7
25emb|BX842529.1|CNS0ADG1 Arabidopsis thaliana Full-length cDNA Co... 40 7.7
26emb|BX842522.1|CNS0ACYL Arabidopsis thaliana Full-length cDNA Co... 40 7.7
27emb|BX842520.1|CNS0ACRW Arabidopsis thaliana Full-length cDNA Co... 40 7.7
28dbj|AK176771.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
29dbj|AK176714.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
30dbj|AK176592.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
31dbj|AK176591.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
32dbj|AK176445.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
33dbj|AK175935.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
34dbj|AK175858.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
35dbj|AK175857.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
36dbj|AK175767.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
37dbj|AK175337.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
38dbj|AK175317.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
39dbj|AK175123.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.7
40dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
41dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
42dbj|AK070742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
43dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
44gb|BT002132.1| Arabidopsis thaliana ATP-dependent Clp protease p... 40 7.7
45dbj|AK061683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
46emb|Z80220.1|CET08G11 Caenorhabditis elegans Cosmid T08G11, comp... 40 7.7
47gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromoso... 40 7.7 
>dbj|AK120928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P13, full
            insert sequence
          Length = 4399

 Score =  525 bits (265), Expect = e-146
 Identities = 379/417 (90%)
 Strand = Plus / Minus

                                                                        
Query: 149  gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 208
            |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 3774 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 3715

                                                                        
Query: 209  accgcgccaaaggatcttgtcaattaccccaaactccttggctttcaaagagtccatata 268
            ||| |||||||||||||||||||| || ||||||||||| || ||||| || ||||||||
Sbjct: 3714 accacgccaaaggatcttgtcaatgacaccaaactcctttgccttcaaggaatccatata 3655

                                                                        
Query: 269  aaacggtcctctcatcaccttgtctattttctccggtggatttccagtgtgccttgctaa 328
            ||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct: 3654 aaatggtcctctcatcaccttgtctattttctctggtggattccccgtgtgccttgctaa 3595

                                                                        
Query: 329  aagtttgaccaaggtgttcctgttgtgcacgacctctttcgcacgaataacaacatcaga 388
            |||| | || |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 3594 aagtctcactaaggtgttcctgttgtgcacaacctctttcgcccgaataacaacatcaga 3535

                                                                        
Query: 389  ggcttgcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatgggg 448
             ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct: 3534 tgcttgcatcattccatatgaagggatacgaggttgctgaatcatagctttggcatgagg 3475

                                                                        
Query: 449  aaacatatatcgtttgcctttcttccctgctgcaaggacaaggcaggcatgacctgctgc 508
             |||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct: 3474 gaacatatagcgttttcctttctttcctgctgcaagtacaagacaggcatgacctgccgc 3415

                                                                     
Query: 509  agctcctatacagagtgtgtgaacctcagttttcatccgcatcatggcatcatagat 565
            |||||||||||| ||||| || | |||||||||||||||||||||||||||||||||
Sbjct: 3414 agctcctatacaaagtgtatggatctcagttttcatccgcatcatggcatcatagat 3358
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>gb|AY112158.1| Zea mays CL4569_1 mRNA sequence
          Length = 1108

 Score =  303 bits (153), Expect = 3e-79
 Identities = 216/237 (91%)
 Strand = Plus / Minus

                                                                       
Query: 149 gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 208
           |||||| ||||| |||||||| || || |||||||||||||| | |||||||||||||||
Sbjct: 626 gactccggcaactttgtcccactcatctggggagagcatgtcagccatgtacttctcctg 567

                                                                       
Query: 209 accgcgccaaaggatcttgtcaattaccccaaactccttggctttcaaagagtccatata 268
           |||||||||||||||||||||||| || ||||||||||| || ||||| |||||||| ||
Sbjct: 566 accgcgccaaaggatcttgtcaatgactccaaactcctttgccttcaaggagtccatgta 507

                                                                       
Query: 269 aaacggtcctctcatcaccttgtctattttctccggtggatttccagtgtgccttgctaa 328
           ||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 506 aaatggtcctctcattaccttgtctattttctctggtggatttccagtatgccttgctaa 447

                                                                    
Query: 329 aagtttgaccaaggtgttcctgttgtgcacgacctctttcgcacgaataacaacatc 385
           |||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 446 aagtttgaccaatgtgttcctgttgtgcacaacctcctttgcacgaataacaacatc 390



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                   
Query: 510 gctcctatacagagtgtgtgaacctcagttttcatccgcatcatggcatcatagat 565
           ||||||||||| |||||||| | |||||||||||| |||||||| |||||||||||
Sbjct: 265 gctcctatacaaagtgtgtggatctcagttttcatacgcatcattgcatcatagat 210
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                            
Query: 360      acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 419
                ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 12829977 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 12830036

                                  
Query: 420      ggttgctgaatcaaagct 437
                ||||||||||||| ||||
Sbjct: 12830037 ggttgctgaatcatagct 12830054



 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                            
Query: 436      ctttggcatggggaaacatatatcgtttgcctttcttccctgctgcaaggacaaggcagg 495
                |||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||
Sbjct: 12830126 ctttggcatgagggaacatatagcgttttcctttctttcctgctgcaagtacaagacagg 12830185

                                               
Query: 496      catgacctgctgcagctcctatacagagtgt 526
                |||||||||| |||||||||||||| |||||
Sbjct: 12830186 catgacctgccgcagctcctatacaaagtgt 12830216



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 224      cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 283
                ||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 12829616 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 12829675

                                        
Query: 284      caccttgtctattttctccggtgg 307
                |||||||||||||||||| |||||
Sbjct: 12829676 caccttgtctattttctctggtgg 12829699



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 149      gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 208
                |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 12829294 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 12829353

                                 
Query: 209      accgcgccaaaggatct 225
                ||| |||||||||||||
Sbjct: 12829354 accacgccaaaggatct 12829370



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                                   
Query: 531      acctcagttttcatccgcatcatggcatcatagat 565
                |||||||||||||||||||||||||||||||||||
Sbjct: 12830654 acctcagttttcatccgcatcatggcatcatagat 12830688



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 315      gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 363
                |||||||||||||||||| | || |||||||||||||||||||| ||||
Sbjct: 12829786 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 12829834
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                         
Query: 360   acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 419
             ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 68193 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 68252

                               
Query: 420   ggttgctgaatcaaagct 437
             ||||||||||||| ||||
Sbjct: 68253 ggttgctgaatcatagct 68270



 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                         
Query: 436   ctttggcatggggaaacatatatcgtttgcctttcttccctgctgcaaggacaaggcagg 495
             |||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||
Sbjct: 68342 ctttggcatgagggaacatatagcgttttcctttctttcctgctgcaagtacaagacagg 68401

                                            
Query: 496   catgacctgctgcagctcctatacagagtgt 526
             |||||||||| |||||||||||||| |||||
Sbjct: 68402 catgacctgccgcagctcctatacaaagtgt 68432



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                         
Query: 224   cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 283
             ||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 67832 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 67891

                                     
Query: 284   caccttgtctattttctccggtgg 307
             |||||||||||||||||| |||||
Sbjct: 67892 caccttgtctattttctctggtgg 67915



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                         
Query: 149   gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 208
             |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 67510 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 67569

                              
Query: 209   accgcgccaaaggatct 225
             ||| |||||||||||||
Sbjct: 67570 accacgccaaaggatct 67586



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                                
Query: 531   acctcagttttcatccgcatcatggcatcatagat 565
             |||||||||||||||||||||||||||||||||||
Sbjct: 68870 acctcagttttcatccgcatcatggcatcatagat 68904



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 315   gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 363
             |||||||||||||||||| | || |||||||||||||||||||| ||||
Sbjct: 68002 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 68050
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                          
Query: 360    acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 419
              ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 109532 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 109473

                                
Query: 420    ggttgctgaatcaaagct 437
              ||||||||||||| ||||
Sbjct: 109472 ggttgctgaatcatagct 109455



 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Minus

                                                                          
Query: 436    ctttggcatggggaaacatatatcgtttgcctttcttccctgctgcaaggacaaggcagg 495
              |||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||
Sbjct: 109383 ctttggcatgagggaacatatagcgttttcctttctttcctgctgcaagtacaagacagg 109324

                                             
Query: 496    catgacctgctgcagctcctatacagagtgt 526
              |||||||||| |||||||||||||| |||||
Sbjct: 109323 catgacctgccgcagctcctatacaaagtgt 109293



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                          
Query: 224    cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 283
              ||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 109893 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 109834

                                      
Query: 284    caccttgtctattttctccggtgg 307
              |||||||||||||||||| |||||
Sbjct: 109833 caccttgtctattttctctggtgg 109810



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                          
Query: 149    gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 208
              |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 110215 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 110156

                               
Query: 209    accgcgccaaaggatct 225
              ||| |||||||||||||
Sbjct: 110155 accacgccaaaggatct 110139



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                                 
Query: 531    acctcagttttcatccgcatcatggcatcatagat 565
              |||||||||||||||||||||||||||||||||||
Sbjct: 108855 acctcagttttcatccgcatcatggcatcatagat 108821



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                               
Query: 315    gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 363
              |||||||||||||||||| | || |||||||||||||||||||| ||||
Sbjct: 109723 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 109675
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                            
Query: 360      acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 419
                ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 12826740 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 12826799

                                  
Query: 420      ggttgctgaatcaaagct 437
                ||||||||||||| ||||
Sbjct: 12826800 ggttgctgaatcatagct 12826817



 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                            
Query: 436      ctttggcatggggaaacatatatcgtttgcctttcttccctgctgcaaggacaaggcagg 495
                |||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||
Sbjct: 12826889 ctttggcatgagggaacatatagcgttttcctttctttcctgctgcaagtacaagacagg 12826948

                                               
Query: 496      catgacctgctgcagctcctatacagagtgt 526
                |||||||||| |||||||||||||| |||||
Sbjct: 12826949 catgacctgccgcagctcctatacaaagtgt 12826979



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 224      cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 283
                ||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 12826379 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 12826438

                                        
Query: 284      caccttgtctattttctccggtgg 307
                |||||||||||||||||| |||||
Sbjct: 12826439 caccttgtctattttctctggtgg 12826462



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 149      gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 208
                |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 12826057 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 12826116

                                 
Query: 209      accgcgccaaaggatct 225
                ||| |||||||||||||
Sbjct: 12826117 accacgccaaaggatct 12826133



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                                   
Query: 531      acctcagttttcatccgcatcatggcatcatagat 565
                |||||||||||||||||||||||||||||||||||
Sbjct: 12827417 acctcagttttcatccgcatcatggcatcatagat 12827451



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 315      gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 363
                |||||||||||||||||| | || |||||||||||||||||||| ||||
Sbjct: 12826549 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 12826597
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>gb|DQ226829.1| Boechera divaricarpa isolate SLW-C-A05 mRNA sequence
          Length = 672

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 207 tgaccgcgccaaaggatcttgtcaattaccccaaa 241
           |||||||||||||| ||||||||||| ||||||||
Sbjct: 324 tgaccgcgccaaagaatcttgtcaatgaccccaaa 290



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                       
Query: 359 gacctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacg 418
           ||||||||| ||||||||||  ||||||  |||  |||||| |||| | ||||| | |||
Sbjct: 172 gacctctttggcacgaataaggacatcactggcaggcatcaacccagaagaaggcacacg 113

                                      
Query: 419 aggttgctgaatcaaagctttggcatg 445
           ||||||||| ||||  ||||| |||||
Sbjct: 112 aggttgctggatcattgctttagcatg 86
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>gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete sequence
          Length = 123800

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 530   aacctcagttttcatccgcatcatggcatcata 562
             |||||||||||||||| ||||||| ||||||||
Sbjct: 97076 aacctcagttttcatctgcatcattgcatcata 97108



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 200   cttctcctgaccgcgccaaaggatct 225
             ||||||||||||||||||||| ||||
Sbjct: 94246 cttctcctgaccgcgccaaagaatct 94271
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>gb|AC124358.4| Mus musculus BAC clone RP24-491B24 from chromosome 3, complete sequence
          Length = 161119

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 463   tgcctttcttccctgctgcaaggacaaggcagg 495
             |||||| ||||| |||||||| |||||||||||
Sbjct: 93726 tgccttccttccgtgctgcaaagacaaggcagg 93694
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>gb|AC105446.4| Homo sapiens BAC clone RP11-395B7 from 7, complete sequence
          Length = 139517

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 469   tcttccctgctgcaaggacaaggca 493
             |||||||||||||||||||| ||||
Sbjct: 48441 tcttccctgctgcaaggacacggca 48417
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>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence
          Length = 200505

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 463   tgcctttcttccctgctgcaaggacaaggcagg 495
             |||||| ||||| |||||||| |||||||||||
Sbjct: 34235 tgccttccttccgtgctgcaaagacaaggcagg 34203
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>ref|NM_001035931.1| Arabidopsis thaliana endopeptidase Clp AT1G09130 transcript variant
           AT1G09130.2 mRNA, complete cds
          Length = 1180

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 783 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 732
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>ref|NM_100782.3| Arabidopsis thaliana endopeptidase Clp AT1G09130 transcript variant
           AT1G09130.1 mRNA, complete cds
          Length = 1356

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
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>ref|NM_188892.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3158

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  aagagtccatataaaacggt 275
            ||||||||||||||||||||
Sbjct: 3003 aagagtccatataaaacggt 2984
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>ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1484_G09.129-1
            mRNA
          Length = 3539

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  aagagtccatataaaacggt 275
            ||||||||||||||||||||
Sbjct: 3268 aagagtccatataaaacggt 3249
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>gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, complete sequence
          Length = 178111

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ctcaaaggcctaactaggta 106
              ||||||||||||||||||||
Sbjct: 139393 ctcaaaggcctaactaggta 139374
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>emb|Y17872.1|EAY17872 Eubacterium acidaminophilum orfS, orfR, orfX, grdG and grdF genes
          Length = 5160

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 accggggcctcggactccag 156
           ||||||||||||||||||||
Sbjct: 973 accggggcctcggactccag 992
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>gb|AY136442.1| Arabidopsis thaliana ATP-dependent Clp protease proteolytic subunit
           (ClpR3), putative (At1g09130) mRNA, complete cds
          Length = 1246

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
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>emb|AJ621739.1| Gallus gallus partial KIF3A gene for kinesin-like protein KIF3A,
            exons 1-2 BAC bW075D23 clone, contig 5
          Length = 62198

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 476  tgctgcaaggacaaggcagg 495
            ||||||||||||||||||||
Sbjct: 6022 tgctgcaaggacaaggcagg 6003
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>emb|BX930233.2| Gallus gallus finished cDNA, clone ChEST587f11
          Length = 790

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 tgctgcaaggacaaggcagg 495
           ||||||||||||||||||||
Sbjct: 410 tgctgcaaggacaaggcagg 391
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>ref|NM_059999.2| Caenorhabditis elegans T08G11.4 (T08G11.4) mRNA, complete cds
          Length = 1878

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  caaactccttggctttcaaa 257
            ||||||||||||||||||||
Sbjct: 1543 caaactccttggctttcaaa 1524
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 256      aagagtccatataaaacggt 275
                ||||||||||||||||||||
Sbjct: 16957740 aagagtccatataaaacggt 16957759
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>emb|BX842538.1|CNS0ADRO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1235

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
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>emb|BX842534.1|CNS0ADQM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1236

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
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>emb|BX842529.1|CNS0ADG1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB72ZD03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
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>emb|BX842522.1|CNS0ACYL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS11ZB08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 757

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 238 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 187
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>emb|BX842520.1|CNS0ACRW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS71ZG02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1189

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 740 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 689
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>dbj|AK176771.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-32-B01
          Length = 1256

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 775 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 724
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>dbj|AK176714.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-25-N08
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
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>dbj|AK176592.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-11-P03
          Length = 1309

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 783 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 732
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>dbj|AK176591.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-11-N19
          Length = 1306

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
to top
>dbj|AK176445.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL24-21-F12
          Length = 1310

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 774 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 723
to top
>dbj|AK175935.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           partial cds, clone: RAFL22-61-D22
          Length = 1225

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 690 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 639
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>dbj|AK175858.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-48-B21
          Length = 1317

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
to top
>dbj|AK175857.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-48-A06
          Length = 1317

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
to top
>dbj|AK175767.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-33-L03
          Length = 1257

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
to top
>dbj|AK175337.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-78-C11
          Length = 1258

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
to top
>dbj|AK175317.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-76-C04
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
to top
>dbj|AK175123.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-53-J08
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 775 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 724
to top
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1484_G09
          Length = 124695

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    aagagtccatataaaacggt 275
              ||||||||||||||||||||
Sbjct: 104751 aagagtccatataaaacggt 104770
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>dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055B18, full
            insert sequence
          Length = 3538

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  aagagtccatataaaacggt 275
            ||||||||||||||||||||
Sbjct: 3267 aagagtccatataaaacggt 3248
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>dbj|AK070742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061C12, full
            insert sequence
          Length = 4317

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  aagagtccatataaaacggt 275
            ||||||||||||||||||||
Sbjct: 4169 aagagtccatataaaacggt 4150
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>dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108G24, full
            insert sequence
          Length = 3158

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  aagagtccatataaaacggt 275
            ||||||||||||||||||||
Sbjct: 3003 aagagtccatataaaacggt 2984
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>gb|BT002132.1| Arabidopsis thaliana ATP-dependent Clp protease proteolytic subunit
           (ClpR3), putative (At1g09130) mRNA, complete cds
          Length = 1127

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 394 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 445
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 733 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 682
to top
>dbj|AK061683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A07, full
            insert sequence
          Length = 1704

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  aagagtccatataaaacggt 275
            ||||||||||||||||||||
Sbjct: 1559 aagagtccatataaaacggt 1540
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>emb|Z80220.1|CET08G11 Caenorhabditis elegans Cosmid T08G11, complete sequence
          Length = 30919

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaactccttggctttcaaa 257
            ||||||||||||||||||||
Sbjct: 7090 caaactccttggctttcaaa 7109
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>gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromosome unknown, complete
             sequence
          Length = 211288

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   tgctgcaaggacaaggcagg 495
             ||||||||||||||||||||
Sbjct: 91999 tgctgcaaggacaaggcagg 92018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,435,200
Number of Sequences: 3902068
Number of extensions: 4435200
Number of successful extensions: 80926
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80718
Number of HSP's gapped (non-prelim): 208
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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