Clone Name | rbasd25g01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 115 bits (58), Expect = 2e-22 Identities = 157/190 (82%) Strand = Plus / Minus Query: 229 ctatttgtcccagccatcttgtcgcctgccaaactcccatttctgaggcagagggccgta 288 |||||||||||||||||| | || | ||||||| ||||||||| || |||||||| || Sbjct: 2494 ctatttgtcccagccatcctctctcatgccaaatagccatttctgggggagagggccata 2435 Query: 289 tatggaggagaacttggccaggcacttggtcctcacgtcatagtgcttctgggtgtcgcg 348 |||||||| |||||| |||| ||| || || || | ||||||||||||||| ||||| || Sbjct: 2434 tatggaggcgaacttcgccaagcatttcgttctgatgtcatagtgcttctgcgtgtctcg 2375 Query: 349 gctgatggcgacggaggagagcttggaggtgtcgatggcccacgccgggtgcacgtactc 408 ||| || || || || || |||||||| |||||||| ||||| || ||||| || ||||| Sbjct: 2374 gctaatagcaactgaagaaagcttggaagtgtcgatagcccaagcagggtgaacatactc 2315 Query: 409 cacggtcctc 418 ||| |||||| Sbjct: 2314 cacagtcctc 2305 Score = 109 bits (55), Expect = 1e-20 Identities = 124/146 (84%), Gaps = 1/146 (0%) Strand = Plus / Minus Query: 455 ttcatcagcaggtcctcacagttgaagttcttgtgcacgtagtccctacctttcctggcc 514 ||||| |||| |||||| ||||||||||||||||| || ||||| || |||| | | || Sbjct: 2277 ttcatgagcaagtcctcgcagttgaagttcttgtggacatagtctctgccttccttagct 2218 Query: 515 tnctcgctccagtacctcttgaaagcaaactcactgtccatgaaagcagcacctgtgagg 574 | | |||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2217 tcttgactccagtatttactgaaagcgaactcactgtccatgaaagcagcacctgtgagg 2158 Query: 575 atcaaggttgtagcccttcttgcccc 600 ||||| ||||||||||||||||||| Sbjct: 2157 atcaa-attgtagcccttcttgcccc 2133
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 115 bits (58), Expect = 2e-22 Identities = 157/190 (82%) Strand = Plus / Minus Query: 229 ctatttgtcccagccatcttgtcgcctgccaaactcccatttctgaggcagagggccgta 288 |||||||||||||||||| | || | ||||||| ||||||||| || |||||||| || Sbjct: 134972 ctatttgtcccagccatcctctctcatgccaaatagccatttctgggggagagggccata 134913 Query: 289 tatggaggagaacttggccaggcacttggtcctcacgtcatagtgcttctgggtgtcgcg 348 |||||||| |||||| |||| ||| || || || | ||||||||||||||| ||||| || Sbjct: 134912 tatggaggcgaacttcgccaagcatttcgttctgatgtcatagtgcttctgcgtgtctcg 134853 Query: 349 gctgatggcgacggaggagagcttggaggtgtcgatggcccacgccgggtgcacgtactc 408 ||| || || || || || |||||||| |||||||| ||||| || ||||| || ||||| Sbjct: 134852 gctaatagcaactgaagaaagcttggaagtgtcgatagcccaagcagggtgaacatactc 134793 Query: 409 cacggtcctc 418 ||| |||||| Sbjct: 134792 cacagtcctc 134783 Score = 109 bits (55), Expect = 1e-20 Identities = 124/146 (84%), Gaps = 1/146 (0%) Strand = Plus / Minus Query: 455 ttcatcagcaggtcctcacagttgaagttcttgtgcacgtagtccctacctttcctggcc 514 ||||| |||| |||||| ||||||||||||||||| || ||||| || |||| | | || Sbjct: 134755 ttcatgagcaagtcctcgcagttgaagttcttgtggacatagtctctgccttccttagct 134696 Query: 515 tnctcgctccagtacctcttgaaagcaaactcactgtccatgaaagcagcacctgtgagg 574 | | |||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 134695 tcttgactccagtatttactgaaagcgaactcactgtccatgaaagcagcacctgtgagg 134636 Query: 575 atcaaggttgtagcccttcttgcccc 600 ||||| ||||||||||||||||||| Sbjct: 134635 atcaa-attgtagcccttcttgcccc 134611
>ref|XM_475798.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2235 Score = 115 bits (58), Expect = 2e-22 Identities = 157/190 (82%) Strand = Plus / Minus Query: 229 ctatttgtcccagccatcttgtcgcctgccaaactcccatttctgaggcagagggccgta 288 |||||||||||||||||| | || | ||||||| ||||||||| || |||||||| || Sbjct: 2235 ctatttgtcccagccatcctctctcatgccaaatagccatttctgggggagagggccata 2176 Query: 289 tatggaggagaacttggccaggcacttggtcctcacgtcatagtgcttctgggtgtcgcg 348 |||||||| |||||| |||| ||| || || || | ||||||||||||||| ||||| || Sbjct: 2175 tatggaggcgaacttcgccaagcatttcgttctgatgtcatagtgcttctgcgtgtctcg 2116 Query: 349 gctgatggcgacggaggagagcttggaggtgtcgatggcccacgccgggtgcacgtactc 408 ||| || || || || || |||||||| |||||||| ||||| || ||||| || ||||| Sbjct: 2115 gctaatagcaactgaagaaagcttggaagtgtcgatagcccaagcagggtgaacatactc 2056 Query: 409 cacggtcctc 418 ||| |||||| Sbjct: 2055 cacagtcctc 2046 Score = 109 bits (55), Expect = 1e-20 Identities = 124/146 (84%), Gaps = 1/146 (0%) Strand = Plus / Minus Query: 455 ttcatcagcaggtcctcacagttgaagttcttgtgcacgtagtccctacctttcctggcc 514 ||||| |||| |||||| ||||||||||||||||| || ||||| || |||| | | || Sbjct: 2018 ttcatgagcaagtcctcgcagttgaagttcttgtggacatagtctctgccttccttagct 1959 Query: 515 tnctcgctccagtacctcttgaaagcaaactcactgtccatgaaagcagcacctgtgagg 574 | | |||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1958 tcttgactccagtatttactgaaagcgaactcactgtccatgaaagcagcacctgtgagg 1899 Query: 575 atcaaggttgtagcccttcttgcccc 600 ||||| ||||||||||||||||||| Sbjct: 1898 atcaa-attgtagcccttcttgcccc 1874
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 115 bits (58), Expect = 2e-22 Identities = 157/190 (82%) Strand = Plus / Minus Query: 229 ctatttgtcccagccatcttgtcgcctgccaaactcccatttctgaggcagagggccgta 288 |||||||||||||||||| | || | ||||||| ||||||||| || |||||||| || Sbjct: 26621497 ctatttgtcccagccatcctctctcatgccaaatagccatttctgggggagagggccata 26621438 Query: 289 tatggaggagaacttggccaggcacttggtcctcacgtcatagtgcttctgggtgtcgcg 348 |||||||| |||||| |||| ||| || || || | ||||||||||||||| ||||| || Sbjct: 26621437 tatggaggcgaacttcgccaagcatttcgttctgatgtcatagtgcttctgcgtgtctcg 26621378 Query: 349 gctgatggcgacggaggagagcttggaggtgtcgatggcccacgccgggtgcacgtactc 408 ||| || || || || || |||||||| |||||||| ||||| || ||||| || ||||| Sbjct: 26621377 gctaatagcaactgaagaaagcttggaagtgtcgatagcccaagcagggtgaacatactc 26621318 Query: 409 cacggtcctc 418 ||| |||||| Sbjct: 26621317 cacagtcctc 26621308 Score = 109 bits (55), Expect = 1e-20 Identities = 124/146 (84%), Gaps = 1/146 (0%) Strand = Plus / Minus Query: 455 ttcatcagcaggtcctcacagttgaagttcttgtgcacgtagtccctacctttcctggcc 514 ||||| |||| |||||| ||||||||||||||||| || ||||| || |||| | | || Sbjct: 26621280 ttcatgagcaagtcctcgcagttgaagttcttgtggacatagtctctgccttccttagct 26621221 Query: 515 tnctcgctccagtacctcttgaaagcaaactcactgtccatgaaagcagcacctgtgagg 574 | | |||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 26621220 tcttgactccagtatttactgaaagcgaactcactgtccatgaaagcagcacctgtgagg 26621161 Query: 575 atcaaggttgtagcccttcttgcccc 600 ||||| ||||||||||||||||||| Sbjct: 26621160 atcaa-attgtagcccttcttgcccc 26621136
>dbj|AK100416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M19, full insert sequence Length = 2750 Score = 115 bits (58), Expect = 2e-22 Identities = 157/190 (82%) Strand = Plus / Minus Query: 229 ctatttgtcccagccatcttgtcgcctgccaaactcccatttctgaggcagagggccgta 288 |||||||||||||||||| | || | ||||||| ||||||||| || |||||||| || Sbjct: 2538 ctatttgtcccagccatcctctctcatgccaaatagccatttctgggggagagggccata 2479 Query: 289 tatggaggagaacttggccaggcacttggtcctcacgtcatagtgcttctgggtgtcgcg 348 |||||||| |||||| |||| ||| || || || | ||||||||||||||| ||||| || Sbjct: 2478 tatggaggcgaacttcgccaagcatttcgttctgatgtcatagtgcttctgcgtgtctcg 2419 Query: 349 gctgatggcgacggaggagagcttggaggtgtcgatggcccacgccgggtgcacgtactc 408 ||| || || || || || |||||||| |||||||| ||||| || ||||| || ||||| Sbjct: 2418 gctaatagcaactgaagaaagcttggaagtgtcgatagcccaagcagggtgaacatactc 2359 Query: 409 cacggtcctc 418 ||| |||||| Sbjct: 2358 cacagtcctc 2349 Score = 109 bits (55), Expect = 1e-20 Identities = 124/146 (84%), Gaps = 1/146 (0%) Strand = Plus / Minus Query: 455 ttcatcagcaggtcctcacagttgaagttcttgtgcacgtagtccctacctttcctggcc 514 ||||| |||| |||||| ||||||||||||||||| || ||||| || |||| | | || Sbjct: 2321 ttcatgagcaagtcctcgcagttgaagttcttgtggacatagtctctgccttccttagct 2262 Query: 515 tnctcgctccagtacctcttgaaagcaaactcactgtccatgaaagcagcacctgtgagg 574 | | |||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2261 tcttgactccagtatttactgaaagcgaactcactgtccatgaaagcagcacctgtgagg 2202 Query: 575 atcaaggttgtagcccttcttgcccc 600 ||||| ||||||||||||||||||| Sbjct: 2201 atcaa-attgtagcccttcttgcccc 2177
>ref|XM_959864.1| Neurospora crassa OR74A hypothetical protein (NCU03098.1) partial mRNA Length = 2040 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gcgtacatgaagttcatcagc 463 ||||||||||||||||||||| Sbjct: 1072 gcgtacatgaagttcatcagc 1092
>ref|XM_330533.1| Neurospora crassa OR74A hypothetical protein (NCU03098.1) partial mRNA Length = 2040 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gcgtacatgaagttcatcagc 463 ||||||||||||||||||||| Sbjct: 1072 gcgtacatgaagttcatcagc 1092
>ref|NM_112172.1| Arabidopsis thaliana unknown protein AT3G13270 mRNA, complete cds Length = 1713 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 acctgtgaggatcaaggttg 584 |||||||||||||||||||| Sbjct: 1683 acctgtgaggatcaaggttg 1702
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tggaggagaacttggccagg 310 |||||||||||||||||||| Sbjct: 450487 tggaggagaacttggccagg 450468
>gb|AC101093.9| Mus musculus chromosome 3, clone RP23-90B11, complete sequence Length = 167727 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cactgtccagagtccaggct 230 |||||||||||||||||||| Sbjct: 106750 cactgtccagagtccaggct 106731
>gb|AC126023.3| Mus musculus BAC clone RP24-422I18 from chromosome 16, complete sequence Length = 198296 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 463 caggtcctcacagttgaagttctt 486 ||||| |||||||||||||||||| Sbjct: 108358 caggttctcacagttgaagttctt 108381
>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete sequence Length = 214125 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gacggaggagagcttggagg 377 |||||||||||||||||||| Sbjct: 129723 gacggaggagagcttggagg 129704
>dbj|AB210281.1| Corynebacterium cyclohexanicum orf1, orf2, pobK, pobR, pobA orf3 genes for possible transposase, possible transposase, possible 4-hydroxybenzoate transporter, possible IclR-type regulator, 4-hydroxybenzoate hydroxylase, possible transposase, partial and complete cds Length = 7287 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 tggcgacggaggagagcttg 373 |||||||||||||||||||| Sbjct: 1834 tggcgacggaggagagcttg 1815
>gb|AC133096.3| Mus musculus BAC clone RP23-271C13 from chromosome 1, complete sequence Length = 195512 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 cttgaaagcaaactcactgt 551 |||||||||||||||||||| Sbjct: 184872 cttgaaagcaaactcactgt 184891
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tctaggcttctagcaaaatc 84 |||||||||||||||||||| Sbjct: 24136314 tctaggcttctagcaaaatc 24136295
>gb|AC008236.4|AC008236 Drosophila melanogaster, chromosome 3R, region 95A-95A, BAC clone BACR24C15, complete sequence Length = 162923 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gcatttgcatctgttggctg 192 |||||||||||||||||||| Sbjct: 76619 gcatttgcatctgttggctg 76600
>dbj|AB024034.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC11 Length = 86233 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 acctgtgaggatcaaggttg 584 |||||||||||||||||||| Sbjct: 26044 acctgtgaggatcaaggttg 26025
>emb|BX537308.18| Zebrafish DNA sequence from clone DKEY-231A18 in linkage group 4, complete sequence Length = 191880 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cccgtcccatgctgcaaaac 139 |||||||||||||||||||| Sbjct: 109467 cccgtcccatgctgcaaaac 109486
>gb|AE003743.3| Drosophila melanogaster chromosome 3R, section 81 of 118 of the complete sequence Length = 210258 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gcatttgcatctgttggctg 192 |||||||||||||||||||| Sbjct: 197374 gcatttgcatctgttggctg 197355
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tctaggcttctagcaaaatc 84 |||||||||||||||||||| Sbjct: 24064520 tctaggcttctagcaaaatc 24064501
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tctaggcttctagcaaaatc 84 |||||||||||||||||||| Sbjct: 21005 tctaggcttctagcaaaatc 20986
>gb|AC137516.3| Mus musculus BAC clone RP23-259P18 from 1, complete sequence Length = 162037 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 cttgaaagcaaactcactgt 551 |||||||||||||||||||| Sbjct: 152149 cttgaaagcaaactcactgt 152130
>gb|AC148774.4| Mus musculus chromosome 3, clone RP24-400J22, complete sequence Length = 135817 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cactgtccagagtccaggct 230 |||||||||||||||||||| Sbjct: 86171 cactgtccagagtccaggct 86190 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,382,260 Number of Sequences: 3902068 Number of extensions: 4382260 Number of successful extensions: 77137 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76999 Number of HSP's gapped (non-prelim): 133 length of query: 612 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 589 effective length of database: 17,143,297,704 effective search space: 10097402347656 effective search space used: 10097402347656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)