ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25f16 |
|---|---|
| Clone Library Name | barley_pub |
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 54.3 bits (129), Expect = 3e-07 Identities = 27/63 (42%), Positives = 38/63 (60%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPE 418 KYG + + IPRP+ PV GVGKVF+E+A +A+ A+ GRKF VV +Y Sbjct: 430 KYGIVRSLEIPRPY-EDHPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDV 488 Query: 417 NKF 409 +K+ Sbjct: 489 DKY 491
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 53.9 bits (128), Expect = 3e-07 Identities = 27/63 (42%), Positives = 38/63 (60%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPE 418 KYG + + IPRP+ PV GVGKVF+E+A +A+ A+ GRKF VV +Y Sbjct: 421 KYGIVRSLEIPRPY-DDHPVPGVGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYDV 479 Query: 417 NKF 409 +K+ Sbjct: 480 DKY 482
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/63 (42%), Positives = 37/63 (58%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPE 418 KYG + V IPRP + G V G GKVF+E+ V KA+ A+ GRKF VV ++ Sbjct: 350 KYGVVRSVEIPRP-IEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDP 408 Query: 417 NKF 409 +K+ Sbjct: 409 DKY 411
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 47.0 bits (110), Expect = 4e-05 Identities = 24/64 (37%), Positives = 36/64 (56%) Frame = -2 Query: 600 GKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 421 GKYG + +V+I PV ++F++++ + +TKA + GR FGG V A FY Sbjct: 309 GKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGRTVRATFYD 368 Query: 420 ENKF 409 E KF Sbjct: 369 EEKF 372
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/59 (40%), Positives = 35/59 (59%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 421 KYG +V +++P+ + G G+VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 353 KYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/59 (40%), Positives = 35/59 (59%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 421 KYG +V +++P+ + G G+VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 353 KYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/59 (40%), Positives = 35/59 (59%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 421 KYG +V +++P+ + G G+VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 353 KYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/57 (40%), Positives = 31/57 (54%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 427 KYG + + IPRP + G V G GK+F+E+ V KA + GRKF VV + Sbjct: 408 KYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKY 463
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/57 (40%), Positives = 31/57 (54%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 427 KYG + + IPRP + G V G GK+F+E+ V KA + GRKF VV + Sbjct: 408 KYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKY 463
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 43.1 bits (100), Expect = 6e-04 Identities = 25/63 (39%), Positives = 35/63 (55%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPE 418 KYG + K VI + G P ++FLE+ V+ + KA ++GR FGG V A FY Sbjct: 336 KYGKVGKCVIFE--IPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 393 Query: 417 NKF 409 +KF Sbjct: 394 DKF 396
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 43.1 bits (100), Expect = 6e-04 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = -2 Query: 594 YGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPEN 415 YG L+ + IPR + G GKVF+ Y+D+ + A M G KF +V FY E+ Sbjct: 451 YGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGED 510
>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 401 Score = 43.1 bits (100), Expect = 6e-04 Identities = 25/63 (39%), Positives = 35/63 (55%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPE 418 KYG + K VI + G P ++FLE+ V+ + KA ++GR FGG V A FY Sbjct: 332 KYGKVGKCVIFE--IPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 389 Query: 417 NKF 409 +KF Sbjct: 390 DKF 392
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 37.4 bits (85), Expect = 0.033 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPE 418 KYG +V + + L G++F+++ + D + KA T +H R FGG + A PE Sbjct: 540 KYGKVVHIAVVPNEL--------GQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPE 591 Query: 417 NKF 409 + Sbjct: 592 TDY 594
>RS2_LEIAM (O43992) 40S ribosomal protein S2| Length = 265 Score = 33.9 bits (76), Expect = 0.37 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = -2 Query: 600 GKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYA---DVDGSTKAKTAMHGRKFGGNPVVAV 430 GK G++ ++P P +G + V K LE+A DV S++ KT H GN ++A Sbjct: 172 GKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTH-----GNLIMAT 226 Query: 429 FYPENK 412 FY K Sbjct: 227 FYALRK 232
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 32.7 bits (73), Expect = 0.82 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = -2 Query: 597 KYGNLVKVVI----PRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAV 430 K+G + +V+I + + + K+F+E++ + + K A+ GR FGG VVA Sbjct: 564 KFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAE 623 Query: 429 FYPENKF 409 Y + F Sbjct: 624 LYDQGIF 630
>SRA31_CAEEL (Q18881) Serpentine receptor class alpha-31 (Protein sra-31)| Length = 338 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 325 CKSNELHKTLLALEKRDNLCCRIIVLFSKLVLGV-EDRNNWVSTKFPSMHRRLCFGGAIN 501 C S E+ TL + N C ++++ S + L V R W + FP+ R L F IN Sbjct: 7 CTSEEIRLTLTSSFMMGNHCFILLIIISSVFLTVFAIRKLWKNNIFPNCTRTLLFSAIIN 66
>RS2_DICDI (P27685) 40S ribosomal protein S2 (S4) (LLRep3 protein)| Length = 265 Score = 30.4 bits (67), Expect = 4.1 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = -2 Query: 600 GKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDG---STKAKTAMHGRKFGGNPVVAV 430 GK G++ ++P P +G + V K L+YA VD S++ KT + GN V+A Sbjct: 173 GKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKT-----RTMGNFVMAT 227 Query: 429 FYPENK 412 F+ K Sbjct: 228 FFAITK 233
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = -2 Query: 558 HLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 421 H+ + S G V+++ + + A A+HGR F G + A + P Sbjct: 462 HIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 507
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = -2 Query: 558 HLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 421 H+ + S G V+++ + + A A+HGR F G + A + P Sbjct: 462 HIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 507
>ZN418_HUMAN (Q8TF45) Zinc finger protein 418| Length = 676 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = +3 Query: 423 GRRPQQLGFHQISFHASPSLLWWSHQHLHTLRTPFQ 530 G RP + SFH S SLL HQ +HT R+P++ Sbjct: 643 GERPYECSECGKSFHRSSSLL--RHQRVHTERSPYK 676 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 423 GRRPQQLGFHQISFHASPSLLWWSHQHLHTLRTPFQLQK 539 G RP + G SFH S SLL HQ HT P++ ++ Sbjct: 534 GERPYECGECGKSFHQSSSLL--RHQKTHTAERPYECRE 570
>TILS_NEPOL (Q9T390) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 367 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%) Frame = +2 Query: 224 IRSTLG----NLSSNINNWRL--CINPGLQESSTRRGNVAVNRTNYTKHYWH 361 IR LG L + N W+L C +P Q+ RR + Y +H+W+ Sbjct: 202 IRPLLGISRLELRNYANRWKLPLCYDPSNQDQRIRRNRIRHELLPYLRHWWN 253
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -2 Query: 597 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGG 448 ++GNL++V + VSG +++YAD + +A T +HG+ G Sbjct: 414 RFGNLIEVYL---------VSGKNVGYVKYADRKSANEAITTLHGKILNG 454 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,490,956 Number of Sequences: 219361 Number of extensions: 1808403 Number of successful extensions: 3768 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3678 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3768 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
