ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25f15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187552.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 511 bits (258), Expect = e-142 Identities = 384/426 (90%) Strand = Plus / Minus Query: 118 ctaatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggc 177 ||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| || Sbjct: 621 ctaatacctttctgctaacctagcagaaacagcccttagcttagaatagactttgcctgc 562 Query: 178 aggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaaga 237 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 561 aggagaacctaagataagactacagagtgaatcccgagcaaccttgatgttaacaaagga 502 Query: 238 gccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgat 297 |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 501 tccaagtatatggatcttcgtatcagcgataactatgcgagtcctcgtagaattctcgat 442 Query: 298 ggcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctc 357 ||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||| Sbjct: 441 ggcatatttggtcttgcctccttttcctgacaagcggccaatagcacgtgacagatgctc 382 Query: 358 cccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacg 417 || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 381 tcctcggagtgtcttcacgtccttgatctcaaaggaatccacatacaggtcatcgagacg 322 Query: 418 aagcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgc 477 |||| ||||| |||| || |||||||| ||||||||||||||||| || ||||| || Sbjct: 321 gagcagcgcaacagcatcggcgatgtcaaaaccaagcataaaagcatgtacgaagtctgc 262 Query: 478 acacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaaccctttt 537 ||||||||||||||||||||| || ||||| || || |||||||||| ||| |||||| | Sbjct: 261 acacttctgaaggttgctcacgtcaggtgtgtcttgtcttgttttcagctccacccttct 202 Query: 538 tgcctt 543 |||||| Sbjct: 201 tgcctt 196
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 509 bits (257), Expect = e-141 Identities = 383/425 (90%) Strand = Plus / Plus Query: 118 ctaatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggc 177 ||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| || Sbjct: 836349 ctaatacctttctgctaacctagcagaaacagcccttagcttagaatagactttgcctgc 836408 Query: 178 aggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaaga 237 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 836409 aggagaacctaagataagactacagagtgaatcccgagcaaccttgatgttaacaaagga 836468 Query: 238 gccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgat 297 |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 836469 tccaagtatatggatcttcgtatcagcgataactatgcgagtcctcgtagaattctcgat 836528 Query: 298 ggcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctc 357 ||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||| Sbjct: 836529 ggcatatttggtcttgcctccttttcctgacaagcggccaatagcacgtgacagatgctc 836588 Query: 358 cccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacg 417 || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 836589 tcctcggagtgtcttcacgtccttgatctcaaaggaatccacatacaggtcatcgagacg 836648 Query: 418 aagcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgc 477 |||| ||||| |||| || |||||||| ||||||||||||||||| || ||||| || Sbjct: 836649 gagcagcgcaacagcatcggcgatgtcaaaaccaagcataaaagcatgtacgaagtctgc 836708 Query: 478 acacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaaccctttt 537 ||||||||||||||||||||| || ||||| || || |||||||||| ||| |||||| | Sbjct: 836709 acacttctgaaggttgctcacgtcaggtgtgtcttgtcttgttttcagctccacccttct 836768 Query: 538 tgcct 542 ||||| Sbjct: 836769 tgcct 836773
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 509 bits (257), Expect = e-141 Identities = 383/425 (90%) Strand = Plus / Plus Query: 118 ctaatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggc 177 ||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| || Sbjct: 836347 ctaatacctttctgctaacctagcagaaacagcccttagcttagaatagactttgcctgc 836406 Query: 178 aggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaaga 237 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 836407 aggagaacctaagataagactacagagtgaatcccgagcaaccttgatgttaacaaagga 836466 Query: 238 gccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgat 297 |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 836467 tccaagtatatggatcttcgtatcagcgataactatgcgagtcctcgtagaattctcgat 836526 Query: 298 ggcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctc 357 ||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||| Sbjct: 836527 ggcatatttggtcttgcctccttttcctgacaagcggccaatagcacgtgacagatgctc 836586 Query: 358 cccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacg 417 || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 836587 tcctcggagtgtcttcacgtccttgatctcaaaggaatccacatacaggtcatcgagacg 836646 Query: 418 aagcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgc 477 |||| ||||| |||| || |||||||| ||||||||||||||||| || ||||| || Sbjct: 836647 gagcagcgcaacagcatcggcgatgtcaaaaccaagcataaaagcatgtacgaagtctgc 836706 Query: 478 acacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaaccctttt 537 ||||||||||||||||||||| || ||||| || || |||||||||| ||| |||||| | Sbjct: 836707 acacttctgaaggttgctcacgtcaggtgtgtcttgtcttgttttcagctccacccttct 836766 Query: 538 tgcct 542 ||||| Sbjct: 836767 tgcct 836771
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 509 bits (257), Expect = e-141 Identities = 383/425 (90%) Strand = Plus / Plus Query: 118 ctaatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggc 177 ||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| || Sbjct: 131894 ctaatacctttctgctaacctagcagaaacagcccttagcttagaatagactttgcctgc 131953 Query: 178 aggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaaga 237 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 131954 aggagaacctaagataagactacagagtgaatcccgagcaaccttgatgttaacaaagga 132013 Query: 238 gccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgat 297 |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 132014 tccaagtatatggatcttcgtatcagcgataactatgcgagtcctcgtagaattctcgat 132073 Query: 298 ggcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctc 357 ||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||| Sbjct: 132074 ggcatatttggtcttgcctccttttcctgacaagcggccaatagcacgtgacagatgctc 132133 Query: 358 cccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacg 417 || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 132134 tcctcggagtgtcttcacgtccttgatctcaaaggaatccacatacaggtcatcgagacg 132193 Query: 418 aagcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgc 477 |||| ||||| |||| || |||||||| ||||||||||||||||| || ||||| || Sbjct: 132194 gagcagcgcaacagcatcggcgatgtcaaaaccaagcataaaagcatgtacgaagtctgc 132253 Query: 478 acacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaaccctttt 537 ||||||||||||||||||||| || ||||| || || |||||||||| ||| |||||| | Sbjct: 132254 acacttctgaaggttgctcacgtcaggtgtgtcttgtcttgttttcagctccacccttct 132313 Query: 538 tgcct 542 ||||| Sbjct: 132314 tgcct 132318
>dbj|AK071287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088J06, full insert sequence Length = 958 Score = 504 bits (254), Expect = e-139 Identities = 383/426 (89%) Strand = Plus / Minus Query: 118 ctaatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggc 177 ||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| || Sbjct: 788 ctaatacctttctgctaacctagcagaaacagcccttagcttagaatagactttgcctgc 729 Query: 178 aggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaaga 237 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct: 728 aggagaacctaagataagactacagagtgaatcccgagcaaccttgatgttaacaaggga 669 Query: 238 gccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgat 297 |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 668 tccaagtatatggatcttcgtatcagcgataactatgcgagtcctcgtagaattctcgat 609 Query: 298 ggcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctc 357 ||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||| Sbjct: 608 ggcatatttggtcttgcctccttttcctgacaagcggccaatagcacgtgacagatgctc 549 Query: 358 cccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacg 417 || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 548 tcctcggagtgtcttcacgtccttgatctcaaaggaatccacatacaggtcatcgagacg 489 Query: 418 aagcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgc 477 |||| ||||| |||| || |||||||| ||||||||||||||||| || ||||| || Sbjct: 488 gagcagcgcaacagcatcggcgatgtcaaaaccaagcataaaagcatgtacgaagtctgc 429 Query: 478 acacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaaccctttt 537 ||||||||||||||||||||| || ||||| || || |||||||||| ||| |||||| | Sbjct: 428 acacttctgaaggttgctcacgtcaggtgtgtcttgtcttgttttcagctccacccttct 369 Query: 538 tgcctt 543 |||||| Sbjct: 368 tgcctt 363
>ref|NM_190854.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 663 Score = 486 bits (245), Expect = e-134 Identities = 380/425 (89%) Strand = Plus / Minus Query: 119 taatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggca 178 ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct: 662 taatacctttcagccaacctggcagaaacggcccttagctttgaatacactttgccagca 603 Query: 179 ggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaagag 238 |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || Sbjct: 602 ggagaacctaagatgagactacagagtgaatcccgagcaaccttgatgttaacaaaggat 543 Query: 239 ccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgatg 298 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 542 ccaagtatgtggatctttgtgtcagcaataactatgcgagtcctggtagaattctcaatg 483 Query: 299 gcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctcc 358 || |||||||||||||||||||| || || | |||||||| ||||| ||||||||||| Sbjct: 482 gcgtatttggtcttgcctcctttccctgacaaacggccaatagcacgtgacagatgctca 423 Query: 359 ccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacga 418 ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| || Sbjct: 422 ccccggagtgtcttcacatccttgatctcgaaggaatccacatacaagtcatcaaggcgg 363 Query: 419 agcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgca 478 ||||| |||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 362 agcaatgcaacggcatctgcgatgtcaaatccaagcataaaagcatgcacgaagtctgca 303 Query: 479 cacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaacccttttt 538 ||||||||||| ||||||||||||||||| || ||||||||||| | ||| |||||| || Sbjct: 302 cacttctgaagattgctcacatctggtgtgtcttgccttgtttttagctccacccttctt 243 Query: 539 gcctt 543 ||||| Sbjct: 242 gcctt 238
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 484 bits (244), Expect = e-133 Identities = 379/424 (89%) Strand = Plus / Plus Query: 119 taatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggca 178 ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct: 33475860 taatacctttcagccaacctggcagaaacggcccttagctttgaatacactttgccagca 33475919 Query: 179 ggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaagag 238 |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || Sbjct: 33475920 ggagaacctaagatgagactacagagtgaatcccgagcaaccttgatgttaacaaaggat 33475979 Query: 239 ccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgatg 298 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 33475980 ccaagtatgtggatctttgtgtcagcaataactatgcgagtcctggtagaattctcaatg 33476039 Query: 299 gcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctcc 358 || |||||||||||||||||||| || || | |||||||| ||||| ||||||||||| Sbjct: 33476040 gcgtatttggtcttgcctcctttccctgacaaacggccaatagcacgtgacagatgctca 33476099 Query: 359 ccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacga 418 ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| || Sbjct: 33476100 ccccggagtgtcttcacatccttgatctcgaaggaatccacatacaagtcatcaaggcgg 33476159 Query: 419 agcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgca 478 ||||| |||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 33476160 agcaatgcaacggcatctgcgatgtcaaatccaagcataaaagcatgcacgaagtctgca 33476219 Query: 479 cacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaacccttttt 538 ||||||||||| ||||||||||||||||| || ||||||||||| | ||| |||||| || Sbjct: 33476220 cacttctgaagattgctcacatctggtgtgtcttgccttgtttttagctccacccttctt 33476279 Query: 539 gcct 542 |||| Sbjct: 33476280 gcct 33476283
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 484 bits (244), Expect = e-133 Identities = 379/424 (89%) Strand = Plus / Plus Query: 119 taatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggca 178 ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct: 21057 taatacctttcagccaacctggcagaaacggcccttagctttgaatacactttgccagca 21116 Query: 179 ggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaagag 238 |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || Sbjct: 21117 ggagaacctaagatgagactacagagtgaatcccgagcaaccttgatgttaacaaaggat 21176 Query: 239 ccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgatg 298 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 21177 ccaagtatgtggatctttgtgtcagcaataactatgcgagtcctggtagaattctcaatg 21236 Query: 299 gcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctcc 358 || |||||||||||||||||||| || || | |||||||| ||||| ||||||||||| Sbjct: 21237 gcgtatttggtcttgcctcctttccctgacaaacggccaatagcacgtgacagatgctca 21296 Query: 359 ccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacga 418 ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| || Sbjct: 21297 ccccggagtgtcttcacatccttgatctcgaaggaatccacatacaagtcatcaaggcgg 21356 Query: 419 agcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgca 478 ||||| |||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 21357 agcaatgcaacggcatctgcgatgtcaaatccaagcataaaagcatgcacgaagtctgca 21416 Query: 479 cacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaacccttttt 538 ||||||||||| ||||||||||||||||| || ||||||||||| | ||| |||||| || Sbjct: 21417 cacttctgaagattgctcacatctggtgtgtcttgccttgtttttagctccacccttctt 21476 Query: 539 gcct 542 |||| Sbjct: 21477 gcct 21480
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 484 bits (244), Expect = e-133 Identities = 379/424 (89%) Strand = Plus / Plus Query: 119 taatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggca 178 ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct: 152026 taatacctttcagccaacctggcagaaacggcccttagctttgaatacactttgccagca 152085 Query: 179 ggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaagag 238 |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || Sbjct: 152086 ggagaacctaagatgagactacagagtgaatcccgagcaaccttgatgttaacaaaggat 152145 Query: 239 ccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgatg 298 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 152146 ccaagtatgtggatctttgtgtcagcaataactatgcgagtcctggtagaattctcaatg 152205 Query: 299 gcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctcc 358 || |||||||||||||||||||| || || | |||||||| ||||| ||||||||||| Sbjct: 152206 gcgtatttggtcttgcctcctttccctgacaaacggccaatagcacgtgacagatgctca 152265 Query: 359 ccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacga 418 ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| || Sbjct: 152266 ccccggagtgtcttcacatccttgatctcgaaggaatccacatacaagtcatcaaggcgg 152325 Query: 419 agcaaggcaacgccatcagcaatgtcaaatccaagcataaaagcatgcacaaagtccgca 478 ||||| |||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 152326 agcaatgcaacggcatctgcgatgtcaaatccaagcataaaagcatgcacgaagtctgca 152385 Query: 479 cacttctgaaggttgctcacatctggtgtatcatgccttgttttcaactcaacccttttt 538 ||||||||||| ||||||||||||||||| || ||||||||||| | ||| |||||| || Sbjct: 152386 cacttctgaagattgctcacatctggtgtgtcttgccttgtttttagctccacccttctt 152445 Query: 539 gcct 542 |||| Sbjct: 152446 gcct 152449
>gb|AY110812.1| Zea mays CL13054_1 mRNA sequence Length = 596 Score = 321 bits (162), Expect = 1e-84 Identities = 285/326 (87%) Strand = Plus / Plus Query: 119 taatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggca 178 ||||||||| | ||||||||||| ||||||||||| || |||||||| || ||||| ||| Sbjct: 261 taataccttaccgccaacctagctgatacagcccttagtttagaatacactttgccagca 320 Query: 179 ggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaagag 238 |||||||| ||||| ||||| || |||||||||| || |||||||||||||| || || Sbjct: 321 ggagaacccaagatgagactgcaaagtgaatcccgcgcgaccttgatgttaacgaaggat 380 Query: 239 ccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgatg 298 ||||||||||||||||| |||||||| || || ||||| |||||||| |||||||| ||| Sbjct: 381 ccaagtatgtggatctttgtatcagcgatgacgatgcgggtcctggttgagttctcaatg 440 Query: 299 gcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctcc 358 || || ||||||||||||||||| || |||| ||||||||| || ||||||||||||||| Sbjct: 441 gcgtacttggtcttgcctcctttccctgataagcggccaatagcgcgcgacagatgctcc 500 Query: 359 ccccgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacga 418 || || | |||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 501 cctcgcaaggtcttcacgtccttgatctcaaaggaatccacatacagatcatcaagacgc 560 Query: 419 agcaaggcaacgccatcagcaatgtc 444 |||||||| ||| ||||||||||||| Sbjct: 561 agcaaggcgacggcatcagcaatgtc 586
>gb|AY344058.1| Sorghum bicolor partner of Nob1 mRNA, complete cds Length = 819 Score = 313 bits (158), Expect = 3e-82 Identities = 248/278 (89%) Strand = Plus / Minus Query: 119 taatacctttctgccaacctagcagatacagccctaagcttagaatagaccttgccggca 178 ||||||||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| ||| Sbjct: 698 taatacctttccgccaacctagctgatacagcccttagcttcgaatacactttgccagca 639 Query: 179 ggagaacctaagataagactacagagtgaatccctggcaaccttgatgttaacaaaagag 238 |||||||| ||||| ||||| || || ||||||| |||||||||||||||||||| || Sbjct: 638 ggagaacccaagatgagactgcaaagcgaatcccgcgcaaccttgatgttaacaaaggat 579 Query: 239 ccaagtatgtggatcttcgtatcagcaataactatgcgagtcctggtagagttctcgatg 298 |||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| ||| Sbjct: 578 ccaagtatatggatctttgtatcagcgataacgatgcgggtcctggtagagttctcaatg 519 Query: 299 gcatatttggtcttgcctccttttcccgataggcggccaatggcacgcgacagatgctcc 358 ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 518 gcatacttggtcttgcctcctttccctgataggcggccaatagcacgcgacagatgctcc 459 Query: 359 ccccgaagtgtcttcacatccttgatctcaaaggaatc 396 || || || |||||||| |||||||||||||||||||| Sbjct: 458 cctcgcagggtcttcacgtccttgatctcaaaggaatc 421 Score = 117 bits (59), Expect = 4e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 450 caagcataaaagcatgcacaaagtccgcacacttctgaaggttgctcacatctggtgtat 509 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 421 caagcataaaagcatgcacaaagtcagcacacttctgaaggttgctcacatctggtgtat 362 Query: 510 catgccttgttttcaactcaaccctttttgccttg 544 | || ||||| || | ||| ||||| |||||||| Sbjct: 361 cttgtcttgtctttagctccaccctccttgccttg 327
>emb|CR931733.2| Medicago truncatula chromosome 5 clone mth2-38a4, COMPLETE SEQUENCE Length = 124746 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 362 cgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatc 411 ||||||||||| |||||||||||||||||||| || ||||| || ||||| Sbjct: 53684 cgaagtgtcttaacatccttgatctcaaaggactcaacatagagttcatc 53733
>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence Length = 136410 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 362 cgaagtgtcttcacatccttgatctcaaaggaatccacatacaggtcatcaagacg 417 ||||||||||| |||||||| ||||||||||| || ||||| || ||||| ||||| Sbjct: 113997 cgaagtgtcttaacatccttaatctcaaaggactcaacatagagctcatccagacg 113942
>gb|AF154661.1| Nicotiana tabacum clone PR52 mRNA sequence Length = 871 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Minus Query: 347 gacagatgctccccccgaagtgtcttcacatccttgatctcaaaggaatcca 398 |||| |||||| || || || |||||||||||||| |||||||| ||||||| Sbjct: 485 gacaaatgctcgccacgcagcgtcttcacatccttaatctcaaacgaatcca 434 Score = 42.1 bits (21), Expect = 1.9 Identities = 54/65 (83%) Strand = Plus / Minus Query: 154 aagcttagaatagaccttgccggcaggagaacctaagataagactacagagtgaatccct 213 |||||||||||| ||||| || |||||||| || | ||||| ||||| || |||||||| Sbjct: 678 aagcttagaataaaccttaccagcaggagaccccataataaggctacaaagcgaatccct 619 Query: 214 ggcaa 218 |||| Sbjct: 618 agcaa 614
>ref|NM_112167.2| Arabidopsis thaliana nucleic acid binding AT3G13230 mRNA, complete cds Length = 891 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 gtcttcacatccttgatctcaaa 390 ||||||||||||||||||||||| Sbjct: 513 gtcttcacatccttgatctcaaa 491
>gb|BT015168.1| Arabidopsis thaliana At3g13230 gene, complete cds Length = 648 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 gtcttcacatccttgatctcaaa 390 ||||||||||||||||||||||| Sbjct: 404 gtcttcacatccttgatctcaaa 382
>gb|BT008667.1| Arabidopsis thaliana clone RAFL17-07-B10 (R50354) mRNA, complete sequence Length = 1275 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 gtcttcacatccttgatctcaaa 390 ||||||||||||||||||||||| Sbjct: 883 gtcttcacatccttgatctcaaa 861
>emb|BX825460.1|CNS0A50J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL38ZE10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 828 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 gtcttcacatccttgatctcaaa 390 ||||||||||||||||||||||| Sbjct: 466 gtcttcacatccttgatctcaaa 444
>gb|AY089052.1| Arabidopsis thaliana clone 22588 mRNA, complete sequence Length = 867 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 gtcttcacatccttgatctcaaa 390 ||||||||||||||||||||||| Sbjct: 512 gtcttcacatccttgatctcaaa 490
>dbj|AB024034.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC11 Length = 86233 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 gtcttcacatccttgatctcaaa 390 ||||||||||||||||||||||| Sbjct: 10989 gtcttcacatccttgatctcaaa 10967
>gb|AC159971.4| Mus musculus chromosome 5, clone RP23-263G19, complete sequence Length = 163375 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 431 ccatcagcaatgtcaaatccaa 452 |||||||||||||||||||||| Sbjct: 150193 ccatcagcaatgtcaaatccaa 150214
>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence Length = 76665 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 373 cacatccttgatctcaaaggaa 394 |||||||||||||||||||||| Sbjct: 73936 cacatccttgatctcaaaggaa 73915
>gb|AC091759.2| Sus scrofa clone RP44-484M10, complete sequence Length = 168703 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 373 cacatccttgatctcaaaggaa 394 |||||||||||||||||||||| Sbjct: 25862 cacatccttgatctcaaaggaa 25841
>gb|AC156592.2| Laccaria bicolor clone JGIAHZW-10X, complete sequence Length = 37070 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 371 ttcacatccttgatctcaaaggaatc 396 |||||||||||||||||||| ||||| Sbjct: 17309 ttcacatccttgatctcaaatgaatc 17334
>gb|AC109165.11| Mus musculus chromosome 5, clone RP23-30B3, complete sequence Length = 202377 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 431 ccatcagcaatgtcaaatccaa 452 |||||||||||||||||||||| Sbjct: 172022 ccatcagcaatgtcaaatccaa 172001
>gb|BC063190.1| Xenopus tropicalis ubiquilin 2, mRNA (cDNA clone MGC:75576 IMAGE:5379110), complete cds Length = 3130 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 atcagcaatgtcaaatccaag 453 ||||||||||||||||||||| Sbjct: 1552 atcagcaatgtcaaatccaag 1572
>gb|BC077987.1| Xenopus laevis ubiquilin 2, mRNA (cDNA clone MGC:81673 IMAGE:6864615), complete cds Length = 2594 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 atcagcaatgtcaaatccaag 453 ||||||||||||||||||||| Sbjct: 1610 atcagcaatgtcaaatccaag 1630
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 367 tgtcttcacatccttgatctcaaaggaatccacatacaggtcatc 411 |||||| ||||||||||||||||| || || | ||||| |||||| Sbjct: 1567256 tgtcttgacatccttgatctcaaaagagtcaagatacaagtcatc 1567300
>ref|XM_534357.2| PREDICTED: Canis familiaris solute carrier family 23 (nucleobase transporters), member 2 (SLC23A2), mRNA Length = 2830 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 gttctcgatggcatatttggt 309 ||||||||||||||||||||| Sbjct: 1279 gttctcgatggcatatttggt 1299
>emb|CT025388.2| Xenopus tropicalis finished cDNA, clone TGas087c05 Length = 3127 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 atcagcaatgtcaaatccaag 453 ||||||||||||||||||||| Sbjct: 1514 atcagcaatgtcaaatccaag 1534
>ref|XM_566941.1| Cryptococcus neoformans var. neoformans JEC21 chaperone (CNA05860) partial mRNA Length = 965 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 367 tgtcttcacatccttgatctcaaaggaatccacatacaggtcatc 411 |||||| ||||||||||||||||| || || | ||||| |||||| Sbjct: 621 tgtcttgacatccttgatctcaaaagagtcaagatacaagtcatc 577
>gb|AY231920.1| Drosophila yakuba clone yak-em_CG11738 mRNA sequence Length = 324 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Minus Query: 332 cggccaatggcacgcgacagatgctccccccgaagtgtcttcacatccttgatctcaaag 391 ||||||||||| |||||| | || || || || || |||||||| ||||||||||| || Sbjct: 113 cggccaatggcgcgcgactggtggtcgccgcgcagagtcttcacgtccttgatctcgaac 54 Query: 392 gaatccacatacaggtc 408 || || ||| ||||||| Sbjct: 53 gactcgacaaacaggtc 37
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 gcaaggcaacgccatcagcaa 440 ||||||||||||||||||||| Sbjct: 106615 gcaaggcaacgccatcagcaa 106635
>ref|NM_203890.1| Xenopus tropicalis ubiquilin 2 (ubqln2), mRNA Length = 3130 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 atcagcaatgtcaaatccaag 453 ||||||||||||||||||||| Sbjct: 1552 atcagcaatgtcaaatccaag 1572
>gb|AY264779.1| Canis familiaris SVCT2-like protein mRNA, partial cds Length = 763 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 gttctcgatggcatatttggt 309 ||||||||||||||||||||| Sbjct: 233 gttctcgatggcatatttggt 253
>ref|NM_214178.1| Sus scrofa solute carrier family 23 (nucleobase transporters), member 2 (SLC23A2), mRNA Length = 1953 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 gttctcgatggcatatttggt 309 ||||||||||||||||||||| Sbjct: 1276 gttctcgatggcatatttggt 1296
>gb|AF118561.1|AF118561 Oryctolagus cuniculus sodium-coupled ascorbic acid transporter SVCT2 mRNA, partial cds Length = 1236 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 gttctcgatggcatatttggt 309 ||||||||||||||||||||| Sbjct: 826 gttctcgatggcatatttggt 846
>gb|AF058320.1|AF058320 Sus scrofa yolk sac permease-like molecule 2 (YSPL2) mRNA, complete cds Length = 1953 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 gttctcgatggcatatttggt 309 ||||||||||||||||||||| Sbjct: 1276 gttctcgatggcatatttggt 1296
>gb|AC114663.8| Mus musculus chromosome 1, clone RP24-172O22, complete sequence Length = 167652 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 agagccaagtatgtggatct 254 |||||||||||||||||||| Sbjct: 83604 agagccaagtatgtggatct 83585
>gb|AC158967.5| Mus musculus chromosome 1, clone RP23-39N17, complete sequence Length = 244130 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 agagccaagtatgtggatct 254 |||||||||||||||||||| Sbjct: 175467 agagccaagtatgtggatct 175448
>ref|XM_592662.2| PREDICTED: Bos taurus similar to Down syndrome cell adhesion molecule precursor (CHD2) (LOC514757), partial mRNA Length = 4033 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 cttcacatccttgatctcaa 389 |||||||||||||||||||| Sbjct: 335 cttcacatccttgatctcaa 316
>gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromosome ul, complete sequence Length = 252782 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 tcttcacatccttgatctca 388 |||||||||||||||||||| Sbjct: 3081 tcttcacatccttgatctca 3100
>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence Length = 179668 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 atctcaaaggaatccacata 402 |||||||||||||||||||| Sbjct: 55660 atctcaaaggaatccacata 55641
>emb|AL050308.9|HSG164F24 Human DNA sequence from clone GS1-164F24 on chromosome Xq26.3-27.3 Contains a NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) (NDUFB3) pseudogene and part of a novel gene, complete sequence Length = 213084 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gaagtgtcttcacatccttg 382 |||||||||||||||||||| Sbjct: 107300 gaagtgtcttcacatccttg 107319
>ref|XM_966258.1| PREDICTED: Tribolium castaneum similar to CG11738-PA (LOC659994), mRNA Length = 861 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 332 cggccaatggcacgcgacagatgctccccccgaagtgtcttcacatccttgatctc 387 ||||||||||| |||||| | || |||||| ||||||||||| ||||| ||||| Sbjct: 610 cggccaatggcccgcgactggtggtcccccttgagtgtcttcacgtccttaatctc 555
>gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosome 17, complete sequence Length = 161075 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 gtatcatgccttgttttcaa 525 |||||||||||||||||||| Sbjct: 131332 gtatcatgccttgttttcaa 131351
>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence Length = 173993 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 atctcaaaggaatccacata 402 |||||||||||||||||||| Sbjct: 61157 atctcaaaggaatccacata 61138
>ref|XM_321458.2| Anopheles gambiae str. PEST ENSANGP00000022076 (ENSANGG00000019587), partial mRNA Length = 600 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 tggtagagttctcgatggca 301 |||||||||||||||||||| Sbjct: 349 tggtagagttctcgatggca 330 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,980,996 Number of Sequences: 3902068 Number of extensions: 3980996 Number of successful extensions: 70517 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70362 Number of HSP's gapped (non-prelim): 155 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
