ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAAD_RICPR (Q9ZD09) Probable aromatic acid decarboxylase (EC 4.1... 29 3.7
2CHBG_SALTY (Q8ZPU1) UPF0249 protein chbG 28 8.2
3CHBG_SALTI (Q8Z6H0) UPF0249 protein chbG 28 8.2

>PAAD_RICPR (Q9ZD09) Probable aromatic acid decarboxylase (EC 4.1.1.-)|
          Length = 189

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 156 CFLKIYGEVAHREEDSLVVFAAGLLVK 76
           C +K    +AH  EDSL+  AAG+++K
Sbjct: 89  CSMKTLASIAHSMEDSLISRAAGVVLK 115



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>CHBG_SALTY (Q8ZPU1) UPF0249 protein chbG|
          Length = 252

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 156 CFLKIYGEVAHREEDSLVVFAAGLLVKTLCVYAXFXCYPDL 34
           CFL+I    AHR E SL V      V  +   + + CYP L
Sbjct: 185 CFLRILDASAHRGEASLEVMCHPAFVDNIIRQSAY-CYPRL 224



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>CHBG_SALTI (Q8Z6H0) UPF0249 protein chbG|
          Length = 252

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 156 CFLKIYGEVAHREEDSLVVFAAGLLVKTLCVYAXFXCYPDL 34
           CFL+I    AHR E SL V      V  +   + + CYP L
Sbjct: 185 CFLRILDASAHRGEASLEVMCHPAFVDNIIRQSAY-CYPRL 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,227,898
Number of Sequences: 219361
Number of extensions: 481346
Number of successful extensions: 1415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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