ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ019624.1| Triticum aestivum pre-mRNA processing factor (Luc... 88 1e-14
2ref|XM_470378.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.013
3ref|XM_470379.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.013
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.013
5gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 48 0.013
6gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-27... 48 0.013
7gb|AY224454.1| Oryza sativa (japonica cultivar-group) isolate 23... 48 0.013
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
9dbj|AK101661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
10dbj|AK067985.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
11gb|U70852.1| Caenorhabditis elegans cosmid F45E4, complete sequence 46 0.051
12ref|NM_068844.2| Caenorhabditis elegans HMG family member (hmg-5... 46 0.051
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.051
14dbj|AP005701.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.051
15gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, c... 42 0.79
16ref|XM_978321.1| PREDICTED: Mus musculus ryanodine receptor 3 (R... 42 0.79
17ref|XM_619795.3| PREDICTED: Mus musculus ryanodine receptor 3 (R... 42 0.79
18ref|XM_917218.2| PREDICTED: Mus musculus ryanodine receptor 3 (R... 42 0.79
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
20gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromo... 42 0.79
21gb|AC156807.2| Pan troglodytes BAC clone CH251-353P10 from chrom... 42 0.79
22ref|XM_575204.1| PREDICTED: Rattus norvegicus similar to ryanodi... 42 0.79
23emb|AL162151.5|CNS01RHO Human chromosome 14 DNA sequence BAC C-3... 42 0.79
24emb|AL662951.3|OSJN00154 Oryza sativa genomic DNA, chromosome 4,... 42 0.79
25emb|AL359681.5|CNS05TEZ Human chromosome 14 DNA sequence BAC C-2... 42 0.79
26ref|NM_104359.2| Arabidopsis thaliana unknown protein AT1G54860 ... 40 3.1
27gb|AC161217.7| Mus musculus chromosome 8, clone RP23-80D9, compl... 40 3.1
28gb|AC004989.1| Homo sapiens PAC clone RP5-1179J19 from 7, comple... 40 3.1
29gb|AC124170.3| Mus musculus BAC clone RP23-155H5 from 8, complet... 40 3.1
30gb|AC122839.4| Mus musculus BAC clone RP23-193K9 from 8, complet... 40 3.1
31gb|AC146543.2| Gasterosteus aculeatus clone CH213-67L12, complet... 40 3.1
32gb|CP000001.1| Bacillus cereus E33L, complete genome 40 3.1
33emb|AL606845.4| Human DNA sequence from clone RP11-126M14 on chr... 40 3.1
34emb|AL161421.11| Human DNA sequence from clone RP11-156K23 on ch... 40 3.1
35gb|AC144489.2| Gasterosteus aculeatus clone CH213-2D11, complete... 40 3.1
36gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis tha... 40 3.1
37emb|BX818032.1|CNS0ACIG Arabidopsis thaliana Full-length cDNA Co... 40 3.1
38gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14... 40 3.1
39gb|BT004947.1| Arabidopsis thaliana clone U20533 unknown protein... 40 3.1
40gb|BT003824.1| Arabidopsis thaliana clone RAFL15-22-O14 (R20533)... 40 3.1
41gb|AY085470.1| Arabidopsis thaliana clone 1530 mRNA, complete se... 40 3.1
42gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24... 40 3.1
43gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 3.1
44emb|AL833795.7| Mouse DNA sequence from clone RP23-81B16 on chro... 40 3.1 
>gb|DQ019624.1| Triticum aestivum pre-mRNA processing factor (Luc7) mRNA, complete
           cds
          Length = 1662

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                           
Query: 195 atcagcttctttcattttctccttgatttcctttgagagctgcgcaac 242
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 558 atcagcttctttcattttctccttgatttcctttgacagctgcgcaac 511



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 49/53 (92%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 131  acctcaccatatatctttagaaagcaccatcactatcatgcaggaagacgaga 183
            ||||||||||| ||||| | | |||||||||||||||||||||||||||||||
Sbjct: 1445 acctcaccatacatcttaa-acagcaccatcactatcatgcaggaagacgaga 1394



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 54/61 (88%), Gaps = 4/61 (6%)
 Strand = Plus / Minus

                                                                        
Query: 63   aaacgcacagggttttaactaacaatccagcagcgaagacaa----caagactatcttcc 118
            |||| ||||||||||| |||||||||||||||| ||||||||    ||||||||||||||
Sbjct: 1525 aaacacacagggttttcactaacaatccagcagtgaagacaaacatcaagactatcttcc 1466

             
Query: 119  t 119
            |
Sbjct: 1465 t 1465
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>ref|XM_470378.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1221

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 195 atcagcttctttcattttctccttgatttcctttga 230
           |||| ||||||||||||| |||||||| ||||||||
Sbjct: 426 atcaacttctttcattttttccttgatctcctttga 391
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>ref|XM_470379.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2501

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 195 atcagcttctttcattttctccttgatttcctttga 230
           |||| ||||||||||||| |||||||| ||||||||
Sbjct: 574 atcaacttctttcattttttccttgatctcctttga 539
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 195      atcagcttctttcattttctccttgatttcctttga 230
                |||| ||||||||||||| |||||||| ||||||||
Sbjct: 35147581 atcaacttctttcattttttccttgatctcctttga 35147616
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
             sequence
          Length = 156606

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 195   atcagcttctttcattttctccttgatttcctttga 230
             |||| ||||||||||||| |||||||| ||||||||
Sbjct: 26342 atcaacttctttcattttttccttgatctcctttga 26377
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>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map
             8p21-p11, complete sequence
          Length = 301232

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 210   tttctccttgatttcctttgagag 233
             ||||||||||||||||||||||||
Sbjct: 96105 tttctccttgatttcctttgagag 96128
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>gb|AY224454.1| Oryza sativa (japonica cultivar-group) isolate 23401 sarcoplasmic
           reticulum protein-like protein mRNA, complete cds
          Length = 1221

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 195 atcagcttctttcattttctccttgatttcctttga 230
           |||| ||||||||||||| |||||||| ||||||||
Sbjct: 426 atcaacttctttcattttttccttgatctcctttga 391
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 195      atcagcttctttcattttctccttgatttcctttga 230
                |||| ||||||||||||| |||||||| ||||||||
Sbjct: 35237653 atcaacttctttcattttttccttgatctcctttga 35237688
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>dbj|AK101661.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057K08, full
           insert sequence
          Length = 2502

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 195 atcagcttctttcattttctccttgatttcctttga 230
           |||| ||||||||||||| |||||||| ||||||||
Sbjct: 575 atcaacttctttcattttttccttgatctcctttga 540
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>dbj|AK067985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124N18, full
           insert sequence
          Length = 1252

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 195 atcagcttctttcattttctccttgatttcctttga 230
           |||| ||||||||||||| |||||||| ||||||||
Sbjct: 534 atcaacttctttcattttttccttgatctcctttga 499
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>gb|U70852.1| Caenorhabditis elegans cosmid F45E4, complete sequence
          Length = 47785

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 197   cagcttctttcattttctccttg 219
             |||||||||||||||||||||||
Sbjct: 39229 cagcttctttcattttctccttg 39251
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>ref|NM_068844.2| Caenorhabditis elegans HMG family member (hmg-5) (hmg-5) mRNA,
           complete cds
          Length = 626

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 197 cagcttctttcattttctccttg 219
           |||||||||||||||||||||||
Sbjct: 485 cagcttctttcattttctccttg 463
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 203     ctttcattttctccttgatttcc 225
               |||||||||||||||||||||||
Sbjct: 9831192 ctttcattttctccttgatttcc 9831214
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>dbj|AP005701.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0095I04
          Length = 138924

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 203   ctttcattttctccttgatttcc 225
             |||||||||||||||||||||||
Sbjct: 13879 ctttcattttctccttgatttcc 13901
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>gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, complete sequence
          Length = 187090

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   agaaagcaccatcactatcat 169
             |||||||||||||||||||||
Sbjct: 36500 agaaagcaccatcactatcat 36520
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>ref|XM_978321.1| PREDICTED: Mus musculus ryanodine receptor 3 (Ryr3), mRNA
          Length = 14220

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 210 tttctccttgatttcctttga 230
           |||||||||||||||||||||
Sbjct: 759 tttctccttgatttcctttga 739
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>ref|XM_619795.3| PREDICTED: Mus musculus ryanodine receptor 3 (Ryr3), mRNA
          Length = 15410

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 210  tttctccttgatttcctttga 230
            |||||||||||||||||||||
Sbjct: 1047 tttctccttgatttcctttga 1027
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>ref|XM_917218.2| PREDICTED: Mus musculus ryanodine receptor 3 (Ryr3), mRNA
          Length = 15410

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 210  tttctccttgatttcctttga 230
            |||||||||||||||||||||
Sbjct: 1047 tttctccttgatttcctttga 1027
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 206     tcattttctccttgatttcct 226
               |||||||||||||||||||||
Sbjct: 3049137 tcattttctccttgatttcct 3049117
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>gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromosome unknown, complete
             sequence
          Length = 174983

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 95    gcgaagacaacaagactatcttcct 119
             |||||||||||||||||| ||||||
Sbjct: 12974 gcgaagacaacaagactaacttcct 12950
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>gb|AC156807.2| Pan troglodytes BAC clone CH251-353P10 from chromosome unknown,
            complete sequence
          Length = 172466

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 95   gcgaagacaacaagactatcttcct 119
            |||||||||||||||||| ||||||
Sbjct: 8995 gcgaagacaacaagactaacttcct 9019
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>ref|XM_575204.1| PREDICTED: Rattus norvegicus similar to ryanodine receptor, brain -
            rabbit (LOC499863), mRNA
          Length = 2448

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 210  tttctccttgatttcctttga 230
            |||||||||||||||||||||
Sbjct: 1074 tttctccttgatttcctttga 1054
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>emb|AL162151.5|CNS01RHO Human chromosome 14 DNA sequence BAC C-3104H21 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 231893

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 95     gcgaagacaacaagactatcttcct 119
              |||||||||||||||||| ||||||
Sbjct: 218127 gcgaagacaacaagactaacttcct 218151
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>emb|AL662951.3|OSJN00154 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011E07,
              complete sequence
          Length = 165094

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 206    tcattttctccttgatttcct 226
              |||||||||||||||||||||
Sbjct: 110212 tcattttctccttgatttcct 110192
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>emb|AL359681.5|CNS05TEZ Human chromosome 14 DNA sequence BAC C-2348N10 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 104782

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 95    gcgaagacaacaagactatcttcct 119
             |||||||||||||||||| ||||||
Sbjct: 20350 gcgaagacaacaagactaacttcct 20374
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>ref|NM_104359.2| Arabidopsis thaliana unknown protein AT1G54860 mRNA, complete cds
          Length = 835

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 tcattttctccttgatttcc 225
           ||||||||||||||||||||
Sbjct: 181 tcattttctccttgatttcc 200
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>gb|AC161217.7| Mus musculus chromosome 8, clone RP23-80D9, complete sequence
          Length = 234127

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    cacagggttttaactaacaa 87
             ||||||||||||||||||||
Sbjct: 76291 cacagggttttaactaacaa 76310
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>gb|AC004989.1| Homo sapiens PAC clone RP5-1179J19 from 7, complete sequence
          Length = 85058

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   tttctccttgatttcctttgagag 233
             ||||||||||||||||| ||||||
Sbjct: 56115 tttctccttgatttcctatgagag 56092
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>gb|AC124170.3| Mus musculus BAC clone RP23-155H5 from 8, complete sequence
          Length = 235023

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    cacagggttttaactaacaa 87
             ||||||||||||||||||||
Sbjct: 91565 cacagggttttaactaacaa 91546
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>gb|AC122839.4| Mus musculus BAC clone RP23-193K9 from 8, complete sequence
          Length = 177322

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   agcttctttcattttctcct 217
             ||||||||||||||||||||
Sbjct: 66360 agcttctttcattttctcct 66379
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>gb|AC146543.2| Gasterosteus aculeatus clone CH213-67L12, complete sequence
          Length = 197879

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    tctttcattttctccttgat 221
              ||||||||||||||||||||
Sbjct: 189391 tctttcattttctccttgat 189410
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 197     cagcttctttcattttctcc 216
               ||||||||||||||||||||
Sbjct: 1722040 cagcttctttcattttctcc 1722021
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>emb|AL606845.4| Human DNA sequence from clone RP11-126M14 on chromosome 6 Contains an ATP
              synthase, H+ transporting, mitochondrial F0 complex,
              subunit g (ATP5L) pseudogene, complete sequence
          Length = 120700

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 211    ttctccttgatttcctttgagagc 234
              |||||||| |||||||||||||||
Sbjct: 117308 ttctccttcatttcctttgagagc 117285
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>emb|AL161421.11| Human DNA sequence from clone RP11-156K23 on chromosome 13 Contains the
             5' end of a novel gene (containd FLJ31509 and KIAA0970), a
             RAD17 homolog (S. pombe) pseudogene and a CpG island,
             complete sequence
          Length = 151445

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 201   ttctttcattttctccttgatttccttt 228
             ||||||||||||||| ||| ||||||||
Sbjct: 31208 ttctttcattttctcattgttttccttt 31235
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>gb|AC144489.2| Gasterosteus aculeatus clone CH213-2D11, complete sequence
          Length = 228976

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   tctttcattttctccttgat 221
             ||||||||||||||||||||
Sbjct: 37323 tctttcattttctccttgat 37342
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>gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 87768

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcattttctccttgatttcc 225
             ||||||||||||||||||||
Sbjct: 86897 tcattttctccttgatttcc 86878
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>emb|BX818032.1|CNS0ACIG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL57ZH07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 734

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 tcattttctccttgatttcc 225
           ||||||||||||||||||||
Sbjct: 108 tcattttctccttgatttcc 127
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>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete
             sequence
          Length = 102135

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcattttctccttgatttcc 225
             ||||||||||||||||||||
Sbjct: 86744 tcattttctccttgatttcc 86763
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>gb|BT004947.1| Arabidopsis thaliana clone U20533 unknown protein (At1g54860) mRNA,
           complete cds
          Length = 634

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 tcattttctccttgatttcc 225
           ||||||||||||||||||||
Sbjct: 50  tcattttctccttgatttcc 69
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>gb|BT003824.1| Arabidopsis thaliana clone RAFL15-22-O14 (R20533) unknown protein
           (At1g54860) mRNA, complete cds
          Length = 812

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 tcattttctccttgatttcc 225
           ||||||||||||||||||||
Sbjct: 137 tcattttctccttgatttcc 156
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>gb|AY085470.1| Arabidopsis thaliana clone 1530 mRNA, complete sequence
          Length = 803

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 tcattttctccttgatttcc 225
           ||||||||||||||||||||
Sbjct: 181 tcattttctccttgatttcc 200
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>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence,
            complete sequence
          Length = 77923

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  tcattttctccttgatttcc 225
            ||||||||||||||||||||
Sbjct: 7655 tcattttctccttgatttcc 7636
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 197     cagcttctttcattttctcc 216
               ||||||||||||||||||||
Sbjct: 1831980 cagcttctttcattttctcc 1831961
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>emb|AL833795.7| Mouse DNA sequence from clone RP23-81B16 on chromosome X, complete
             sequence
          Length = 72909

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   caccatcactatcatgcagg 174
             ||||||||||||||||||||
Sbjct: 41397 caccatcactatcatgcagg 41378


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,140,633
Number of Sequences: 3902068
Number of extensions: 2140633
Number of successful extensions: 44418
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44299
Number of HSP's gapped (non-prelim): 118
length of query: 243
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 221
effective length of database: 17,147,199,772
effective search space: 3789531149612
effective search space used: 3789531149612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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