Clone Name | rbasd25e24 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 73.8 bits (37), Expect = 1e-10 Identities = 74/87 (85%) Strand = Plus / Plus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| ||||| || | |||||| | || ||||||||||| ||||| Sbjct: 17967313 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 17967372 Query: 69 aacaccacctgaaacaacctttaataa 95 |||||| |||||||||||||||||||| Sbjct: 17967373 aacacctcctgaaacaacctttaataa 17967399
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 1e-10 Identities = 74/87 (85%) Strand = Plus / Plus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| |||||||| | |||||| | || ||||||||||| ||||| Sbjct: 10813902 ctgtaggccattcttctcagcaatctgattcaaatgagttctgacatactggtttgatgc 10813961 Query: 69 aacaccacctgaaacaacctttaataa 95 ||| || |||||||||||||||||||| Sbjct: 10813962 aacgcctcctgaaacaacctttaataa 10813988
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 73.8 bits (37), Expect = 1e-10 Identities = 74/87 (85%) Strand = Plus / Plus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| |||||||| | |||||| | || ||||||||||| ||||| Sbjct: 136716 ctgtaggccattcttctcagcaatctgattcaaatgagttctgacatactggtttgatgc 136775 Query: 69 aacaccacctgaaacaacctttaataa 95 ||| || |||||||||||||||||||| Sbjct: 136776 aacgcctcctgaaacaacctttaataa 136802
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 73.8 bits (37), Expect = 1e-10 Identities = 74/87 (85%) Strand = Plus / Plus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| |||||||| | |||||| | || ||||||||||| ||||| Sbjct: 918 ctgtaggccattcttctcagcaatctgattcaaatgagttctgacatactggtttgatgc 977 Query: 69 aacaccacctgaaacaacctttaataa 95 ||| || |||||||||||||||||||| Sbjct: 978 aacgcctcctgaaacaacctttaataa 1004
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 73.8 bits (37), Expect = 1e-10 Identities = 74/87 (85%) Strand = Plus / Plus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| ||||| || | |||||| | || ||||||||||| ||||| Sbjct: 17893632 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 17893691 Query: 69 aacaccacctgaaacaacctttaataa 95 |||||| |||||||||||||||||||| Sbjct: 17893692 aacacctcctgaaacaacctttaataa 17893718
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124294 Score = 73.8 bits (37), Expect = 1e-10 Identities = 74/87 (85%) Strand = Plus / Minus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| ||||| || | |||||| | || ||||||||||| ||||| Sbjct: 118379 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 118320 Query: 69 aacaccacctgaaacaacctttaataa 95 |||||| |||||||||||||||||||| Sbjct: 118319 aacacctcctgaaacaacctttaataa 118293
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147543 Score = 73.8 bits (37), Expect = 1e-10 Identities = 74/87 (85%) Strand = Plus / Minus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| ||||| || | |||||| | || ||||||||||| ||||| Sbjct: 31243 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 31184 Query: 69 aacaccacctgaaacaacctttaataa 95 |||||| |||||||||||||||||||| Sbjct: 31183 aacacctcctgaaacaacctttaataa 31157
>dbj|AK099965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126M09, full insert sequence Length = 1718 Score = 56.0 bits (28), Expect = 3e-05 Identities = 65/78 (83%) Strand = Plus / Minus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| ||||| || | |||||| | || ||||||||||| ||||| Sbjct: 1154 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 1095 Query: 69 aacaccacctgaaacaac 86 |||||| ||||||||||| Sbjct: 1094 aacacctcctgaaacaac 1077
>dbj|AK070912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064I01, full insert sequence Length = 1672 Score = 56.0 bits (28), Expect = 3e-05 Identities = 65/78 (83%) Strand = Plus / Minus Query: 9 ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68 ||||||||||||||| ||||| || | |||||| | || ||||||||||| ||||| Sbjct: 1158 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 1099 Query: 69 aacaccacctgaaacaac 86 |||||| ||||||||||| Sbjct: 1098 aacacctcctgaaacaac 1081
>ref|XM_662822.1| Cryptosporidium hominis TU502 myosin B (Chro.70483) partial mRNA Length = 3831 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 80 aaacaacctttaataattgaat 101 |||||||||||||||||||||| Sbjct: 1847 aaacaacctttaataattgaat 1826
>ref|XM_628587.1| Cryptosporidium parvum Iowa II myosin'unconventional myosin fused to an RCC1 domain (unique)' (cgd7_4350), partial mRNA Length = 4983 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 80 aaacaacctttaataattgaat 101 |||||||||||||||||||||| Sbjct: 1847 aaacaacctttaataattgaat 1826
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 42.1 bits (21), Expect = 0.45 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 gccattcttntcagcaatatcatt 38 ||||||||| |||||||||||||| Sbjct: 602423 gccattcttatcagcaatatcatt 602400
>gb|AC104607.15| Drosophila melanogaster X BAC RP98-19G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 137639 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ttaataattgaatcggttaa 108 |||||||||||||||||||| Sbjct: 51161 ttaataattgaatcggttaa 51142
>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184175 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ttaataattgaatcggttaa 108 |||||||||||||||||||| Sbjct: 164915 ttaataattgaatcggttaa 164896
>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete sequence Length = 318665 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ttaataattgaatcggttaa 108 |||||||||||||||||||| Sbjct: 191804 ttaataattgaatcggttaa 191785
>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10, complete sequence Length = 121560 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 104 gttaacacactgaatgaaa 122 ||||||||||||||||||| Sbjct: 111883 gttaacacactgaatgaaa 111865
>emb|AL157402.19| Human DNA sequence from clone RP11-553K8 on chromosome 1q31.2-31.3 Contains the ATP6V1G3 gene for H+ transporting ATPase lysosomal 13kDa V1 subunit G isoform 3, two novel genes, a prostatic binding protein (PBP) pseudogene and the 5' end of the PTPRC gene for receptor type protein tyrosine phosphatase C, complete sequence Length = 210331 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 aacctttaataattgaatc 102 ||||||||||||||||||| Sbjct: 207857 aacctttaataattgaatc 207839
>gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161127 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 caacaccacctgaaacaac 86 ||||||||||||||||||| Sbjct: 80476 caacaccacctgaaacaac 80458
>emb|AL132641.3|CNS01DT6 Human chromosome 14 DNA sequence BAC C-3175A2 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 136603 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 95 attgaatcggttaacacactgaa 117 |||||||| |||||||||||||| Sbjct: 67806 attgaatctgttaacacactgaa 67828 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 863,631 Number of Sequences: 3902068 Number of extensions: 863631 Number of successful extensions: 52842 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52735 Number of HSP's gapped (non-prelim): 107 length of query: 146 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 125 effective length of database: 17,151,101,840 effective search space: 2143887730000 effective search space used: 2143887730000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)