ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 74 1e-10
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 1e-10
3dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic D... 74 1e-10
4dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic D... 74 1e-10
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 74 1e-10
6emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb... 74 1e-10
7emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa... 74 1e-10
8dbj|AK099965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-05
9dbj|AK070912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-05
10ref|XM_662822.1| Cryptosporidium hominis TU502 myosin B (Chro.70... 44 0.11
11ref|XM_628587.1| Cryptosporidium parvum Iowa II myosin'unconvent... 44 0.11
12gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 42 0.45
13gb|AC104607.15| Drosophila melanogaster X BAC RP98-19G9 (Roswell... 40 1.8
14gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell... 40 1.8
15gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 ... 40 1.8
16emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 ... 38 7.0
17emb|AL157402.19| Human DNA sequence from clone RP11-553K8 on chr... 38 7.0
18gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Can... 38 7.0
19emb|AL132641.3|CNS01DT6 Human chromosome 14 DNA sequence BAC C-3... 38 7.0

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                            
Query: 9        ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
                ||||||||||||||| ||||| || | ||||||  |    || ||||||||||| |||||
Sbjct: 17967313 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 17967372

                                           
Query: 69       aacaccacctgaaacaacctttaataa 95
                |||||| ||||||||||||||||||||
Sbjct: 17967373 aacacctcctgaaacaacctttaataa 17967399



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                            
Query: 9        ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
                ||||||||||||||| |||||||| | ||||||  |    || ||||||||||| |||||
Sbjct: 10813902 ctgtaggccattcttctcagcaatctgattcaaatgagttctgacatactggtttgatgc 10813961

                                           
Query: 69       aacaccacctgaaacaacctttaataa 95
                ||| || ||||||||||||||||||||
Sbjct: 10813962 aacgcctcctgaaacaacctttaataa 10813988



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>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0702D12
          Length = 137332

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                          
Query: 9      ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
              ||||||||||||||| |||||||| | ||||||  |    || ||||||||||| |||||
Sbjct: 136716 ctgtaggccattcttctcagcaatctgattcaaatgagttctgacatactggtttgatgc 136775

                                         
Query: 69     aacaccacctgaaacaacctttaataa 95
              ||| || ||||||||||||||||||||
Sbjct: 136776 aacgcctcctgaaacaacctttaataa 136802



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>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0025P13
          Length = 133242

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                        
Query: 9    ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
            ||||||||||||||| |||||||| | ||||||  |    || ||||||||||| |||||
Sbjct: 918  ctgtaggccattcttctcagcaatctgattcaaatgagttctgacatactggtttgatgc 977

                                       
Query: 69   aacaccacctgaaacaacctttaataa 95
            ||| || ||||||||||||||||||||
Sbjct: 978  aacgcctcctgaaacaacctttaataa 1004



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                            
Query: 9        ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
                ||||||||||||||| ||||| || | ||||||  |    || ||||||||||| |||||
Sbjct: 17893632 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 17893691

                                           
Query: 69       aacaccacctgaaacaacctttaataa 95
                |||||| ||||||||||||||||||||
Sbjct: 17893692 aacacctcctgaaacaacctttaataa 17893718



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>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 124294

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                          
Query: 9      ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
              ||||||||||||||| ||||| || | ||||||  |    || ||||||||||| |||||
Sbjct: 118379 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 118320

                                         
Query: 69     aacaccacctgaaacaacctttaataa 95
              |||||| ||||||||||||||||||||
Sbjct: 118319 aacacctcctgaaacaacctttaataa 118293



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>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147543

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                         
Query: 9     ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
             ||||||||||||||| ||||| || | ||||||  |    || ||||||||||| |||||
Sbjct: 31243 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 31184

                                        
Query: 69    aacaccacctgaaacaacctttaataa 95
             |||||| ||||||||||||||||||||
Sbjct: 31183 aacacctcctgaaacaacctttaataa 31157



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>dbj|AK099965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126M09, full
            insert sequence
          Length = 1718

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                        
Query: 9    ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
            ||||||||||||||| ||||| || | ||||||  |    || ||||||||||| |||||
Sbjct: 1154 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 1095

                              
Query: 69   aacaccacctgaaacaac 86
            |||||| |||||||||||
Sbjct: 1094 aacacctcctgaaacaac 1077



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>dbj|AK070912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064I01, full
            insert sequence
          Length = 1672

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                        
Query: 9    ctgtaggccattcttntcagcaatatcattcaagcggnccctaacatactggttcgatgc 68
            ||||||||||||||| ||||| || | ||||||  |    || ||||||||||| |||||
Sbjct: 1158 ctgtaggccattcttctcagcgatctgattcaaatgagttctgacatactggtttgatgc 1099

                              
Query: 69   aacaccacctgaaacaac 86
            |||||| |||||||||||
Sbjct: 1098 aacacctcctgaaacaac 1081



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>ref|XM_662822.1| Cryptosporidium hominis TU502 myosin B (Chro.70483) partial mRNA
          Length = 3831

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 80   aaacaacctttaataattgaat 101
            ||||||||||||||||||||||
Sbjct: 1847 aaacaacctttaataattgaat 1826



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>ref|XM_628587.1| Cryptosporidium parvum Iowa II myosin'unconventional myosin fused to
            an RCC1 domain (unique)' (cgd7_4350), partial mRNA
          Length = 4983

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 80   aaacaacctttaataattgaat 101
            ||||||||||||||||||||||
Sbjct: 1847 aaacaacctttaataattgaat 1826



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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 15     gccattcttntcagcaatatcatt 38
              ||||||||| ||||||||||||||
Sbjct: 602423 gccattcttatcagcaatatcatt 602400



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>gb|AC104607.15| Drosophila melanogaster X BAC RP98-19G9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 137639

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    ttaataattgaatcggttaa 108
             ||||||||||||||||||||
Sbjct: 51161 ttaataattgaatcggttaa 51142



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>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 184175

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     ttaataattgaatcggttaa 108
              ||||||||||||||||||||
Sbjct: 164915 ttaataattgaatcggttaa 164896



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>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete
              sequence
          Length = 318665

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     ttaataattgaatcggttaa 108
              ||||||||||||||||||||
Sbjct: 191804 ttaataattgaatcggttaa 191785



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>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10,
              complete sequence
          Length = 121560

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    gttaacacactgaatgaaa 122
              |||||||||||||||||||
Sbjct: 111883 gttaacacactgaatgaaa 111865



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>emb|AL157402.19| Human DNA sequence from clone RP11-553K8 on chromosome 1q31.2-31.3
              Contains the ATP6V1G3 gene for H+ transporting ATPase
              lysosomal 13kDa V1 subunit G isoform 3, two novel genes, a
              prostatic binding protein (PBP) pseudogene and the 5' end
              of the PTPRC gene for receptor type protein tyrosine
              phosphatase C, complete sequence
          Length = 210331

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     aacctttaataattgaatc 102
              |||||||||||||||||||
Sbjct: 207857 aacctttaataattgaatc 207839



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>gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161127

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    caacaccacctgaaacaac 86
             |||||||||||||||||||
Sbjct: 80476 caacaccacctgaaacaac 80458



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>emb|AL132641.3|CNS01DT6 Human chromosome 14 DNA sequence BAC C-3175A2 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 136603

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 95    attgaatcggttaacacactgaa 117
             |||||||| ||||||||||||||
Sbjct: 67806 attgaatctgttaacacactgaa 67828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 863,631
Number of Sequences: 3902068
Number of extensions: 863631
Number of successful extensions: 52842
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52735
Number of HSP's gapped (non-prelim): 107
length of query: 146
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 125
effective length of database: 17,151,101,840
effective search space: 2143887730000
effective search space used: 2143887730000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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