>CSN7_ARATH (Q94JU3) COP9 signalosome complex subunit 7 (CSN complex subunit 7)|
           (FUSCA protein 5) (FUSCA5)
          Length = 260

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 28/49 (57%), Positives = 37/49 (75%)
 Frame = -3

Query: 461 LGTSDSLLHQIQEKIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNV 315
           L TS++LL  IQ+KIKWAD  SE++KKH+KE E+ VEE KKS+    +V
Sbjct: 178 LNTSENLLISIQDKIKWADNMSEMDKKHRKEAEEGVEEVKKSLSMKGDV 226



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
 Frame = -2

Query: 345 QEVSQEVEQCKQA-----DSDLRGHDDFLSESGGIMXFEEDRIXPKRRRQPM 205
           +E  + VE+ K++     D D+RG+ +   E  G+M +EED I PKRRR P+
Sbjct: 207 KEAEEGVEEVKKSLSMKGDVDIRGNKEMFGEPSGVMDYEEDGIRPKRRRHPV 258

>RAD18_HUMAN (Q9NS91) Postreplication repair protein RAD18 (hRAD18) (hHR18)|
           (RING finger protein 73)
          Length = 495

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = -3

Query: 398 SELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTVT 297
           S+  KKH+ EF+  V++A+K  KK+  +S++TVT
Sbjct: 340 SKYRKKHKSEFQLLVDQARKGYKKIAGMSQKTVT 373

>M5_STRP5 (P02977) M protein, serotype 5 precursor|
          Length = 492

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 422 KIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTV 300
           KIK  D T ELNK  Q E  ++ +E+K++ K LN +  +TV
Sbjct: 140 KIKNGDLTKELNKTRQ-ELANKQQESKENEKALNELLEKTV 179

>RAD18_MOUSE (Q9QXK2) Postreplication repair protein RAD18 (mRAD18Sc)|
          Length = 509

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 437 HQIQEKIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNVSR 309
           +Q +++I+  +  SE  KKHQ  F+  V++AKK  KK   VS+
Sbjct: 329 NQTEKEIE--EVHSEYRKKHQNAFQLLVDQAKKGYKKTGRVSQ 369

>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
           (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
           homolog)
          Length = 1288

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -3

Query: 434 QIQEKIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTVT 297
           Q++EK+K A + ++  +K  ++ +++VEE K    K NN+  +T T
Sbjct: 399 QVREKLKHATSKAKKLEKQLQKDKEKVEEFKSIPAKSNNIINETTT 444

>DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150)|
            (DAP-150) (p150-glued)
          Length = 1224

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
 Frame = -3

Query: 452  SDSLLHQIQEKIKWADTTSELNKKHQKEFE----------DRVEEAKKSVK-KLNNVSRQ 306
            +D  + +IQ K+   D T  L KK +KEFE          D++E  K  +K +LNN S++
Sbjct: 980  ADDRVEKIQTKL---DETQTLLKKKEKEFEETMDALQADIDQLESEKVELKQRLNNQSKR 1036

Query: 305  TV 300
            T+
Sbjct: 1037 TI 1038

>APSB_EMENI (O60039) Anucleate primary sterigmata protein B|
          Length = 1051

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
 Frame = -2

Query: 342 EVSQEVEQCKQADSDLRGHDDFL--------SESGGIMXFEED 238
           E+ Q++E+C++   DLR  DD L        S S GI+  EED
Sbjct: 412 ELDQKIEECQRLTEDLRTQDDNLRALQAEMRSASEGIIRLEED 454

>RS25_PYRAE (Q8ZVP1) 30S ribosomal protein S25e|
          Length = 110

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 404 TTSELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTV 300
           T S+L KK +KE   + ++AKK VKK    +++T+
Sbjct: 8   TLSQLAKKAEKEKAQQAQKAKKEVKKEETPAKRTI 42

>MTSS1_HUMAN (O43312) Metastasis suppressor protein 1 (Missing in metastasis|
           protein) (Metastasis suppressor YGL-1)
          Length = 755

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 449 DSLLHQIQEKIK-WADTTSELNKKHQKEFEDRVEEAKK 339
           D L++ +QE+++ W    ++L+K H KE++   +E KK
Sbjct: 102 DCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKK 139

>COG8_CAEEL (O44502) Putative conserved oligomeric Golgi complex component 8|
          Length = 743

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 434 QIQEKIKWADTTSELNKKHQKEFE--DRVEEAKKSVKKLNNVSRQT 303
           +  E +K  +TTSEL KKH  +FE  +  E   + VK+    S  T
Sbjct: 560 EASESVKEQETTSELEKKHGTDFETAETQEMVSEPVKEHETTSELT 605

>INO80_DEBHA (Q6BGY8) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1364

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -3

Query: 395 ELNKKHQKEFEDRVE------EAKKSVKKLNNVSRQTVTY 294
           EL KKH+KE  D+ +      E+K+  +KLN +  QT  Y
Sbjct: 411 ELRKKHEKEILDKAKKEEEERESKRQSRKLNFLITQTELY 450

>INO80_CANAL (Q59KI4) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1387

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -3

Query: 395 ELNKKHQKEFEDRVE------EAKKSVKKLNNVSRQTVTY 294
           +L KKH+KE  D+ +      EAK+  +KLN +  QT  Y
Sbjct: 514 DLKKKHEKELLDKAKKEEEEREAKRQSRKLNFLITQTELY 553

>ALM1_SCHPO (Q9UTK5) Abnormal long morphology protein 1 (Sp8)|
          Length = 1727

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = -3

Query: 461  LGTSDSLLHQIQEKIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTVTYGGMT 282
            L  ++ ++ +++EKI+   T     + ++++ E +++  K +VKKL N + +   +    
Sbjct: 1246 LERNEEVITELREKIETLKTDLANFRLNKEQLESQLQTEKAAVKKLENSNEEYKRHNQEI 1305

Query: 281  TFSLN 267
              SLN
Sbjct: 1306 LLSLN 1310

>TBC14_MOUSE (Q8CGA2) TBC1 domain family member 14|
          Length = 679

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 422 KIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTVTYGGMTTFSLNLEE 258
           K+   +T  + +KK QKE+ED+     +      NV R+ + +  ++T +L LE+
Sbjct: 251 KVPLRETAQKDSKKTQKEYEDKAGRPSRPPSPKQNV-RKNLDFEPLSTTALILED 304

>PALY_BROFI (Q42609) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 703

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -3

Query: 449 DSLLHQIQEKIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNVSRQ-----TVTYGG 288
           + L  Q ++ + W    +EL   H  E +  VEE ++ V KL  V  +      V +GG
Sbjct: 7   NGLCLQGRDPLNWGAAAAELQGSHLDEVKKMVEEFRRPVVKLEGVKLKISQVAAVAFGG 65

>INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1910

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = -3

Query: 395 ELNKKHQKEF------EDRVEEAKKSVKKLNNVSRQTVTYGGMTTFSLNLEE*WXLRRTA 234
           EL KK ++E       E+ + EAK+  +KLN +  QT  Y       L   E      TA
Sbjct: 802 ELRKKAEREALEKAKKEEEMREAKRQARKLNFLISQTELYSHFVGSKLKTAEAEESEETA 861

Query: 233 SXQK 222
              K
Sbjct: 862 GSSK 865

>SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like 1 protein|
           (Chromosome-associated polypeptide C) (XCAP-C homolog)
          Length = 1286

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -3

Query: 434 QIQEKIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTVT 297
           Q++EK+K A + ++  +K  ++ +++VEE K    K   V  +T T
Sbjct: 397 QVREKLKHATSKAKKLEKQLQKDKEKVEELKSVPAKSKTVINETTT 442

>GRPE_KLULA (Q6CRQ1) GrpE protein homolog, mitochondrial precursor|
          Length = 243

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 449 DSLLHQIQEKIKWADTTSELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTV 300
           D+ L + Q+KIK  +T  +   K   EF+DR+  +    + L  V+++ +
Sbjct: 72  DANLTEEQKKIKDLETKLDAKTKEASEFKDRLLRSVADFRNLQEVTKKDI 121

>MTSS1_MOUSE (Q8R1S4) Metastasis suppressor protein 1 (Missing in metastasis|
           protein)
          Length = 759

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 449 DSLLHQIQEKIK-WADTTSELNKKHQKEFEDRVEEAK 342
           D L++ +QE+++ W    ++L+K H KE++   +E K
Sbjct: 102 DCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIK 138

>TAGH_LISMF (Q720Z5) Teichoic acids export ATP-binding protein tagH (EC|
           3.6.3.40)
          Length = 335

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 461 LGTSDSLLHQIQEKIKWADTT-SELNKKHQKEFEDRVEEAKKSVKKLNNVSRQTVT 297
           +GT+  +  +  E +KW +   ++  KK+QKE ++  +  +K +    N ++  +T
Sbjct: 227 MGTAQEVAQKYDEFVKWFNKQPNDYKKKYQKEHKENQKAPQKKIYPNPNANKYRLT 282

>BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 643

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = -3

Query: 419 IKWADTTSELNKKH------QKEFEDRVEEAKKSVKKLNNVSRQTVTYGGMTTFSLNLEE 258
           +K  D TS+L+K +      Q+E    +EE  K   KLN++  +T       T+  N  +
Sbjct: 503 LKIMDLTSQLSKANKSSTLVQQECNKLIEEKAKMESKLNDLEIETKNLATKLTYQENKSK 562

Query: 257 *WXLRRTASXQKGGDN 210
              L +T     GGDN
Sbjct: 563 --KLHKTL-VSNGGDN 575


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,494,983
Number of Sequences: 219361
Number of extensions: 1035413
Number of successful extensions: 3039
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3037
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)