Clone Name	rbasd24p18
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AY105643.1| Zea mays PCO067509 mRNA sequence	299	4e-78
2	dbj|AK058214.1| Oryza sativa (japonica cultivar-group) cDNA clon...	289	4e-75
3	gb|BT017720.1| Zea mays clone EL01N0447C01.c mRNA sequence	266	6e-68
4	gb|AY107395.1| Zea mays PCO067507 mRNA sequence	262	9e-67
5	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	165	2e-37
6	dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic D...	165	2e-37
7	dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic D...	165	2e-37
8	gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome	44	0.40
9	gb|AC078816.16| Homo sapiens 3 BAC RP11-600P18 (Roswell Park Can...	44	0.40
10	gb|AF411849.1|AF411849S1 Homo sapiens USH3 region, partial sequence	44	0.40
11	emb|CR388163.10| Zebrafish DNA sequence from clone CH211-247L8 i...	42	1.6
12	emb|BX663525.6| Zebrafish DNA sequence from clone DKEY-97A13 in ...	42	1.6
13	ref|NM_137840.2| Drosophila melanogaster CG4294-RA (CG4294), mRNA	42	1.6
14	ref|XM_694098.1| PREDICTED: Danio rerio similar to MGC81165 prot...	42	1.6
15	gb|AC008349.2|AC008349 Drosophila melanogaster, chromosome 2R, r...	42	1.6
16	gb|AE003458.3| Drosophila melanogaster chromosome 2R, section 66...	42	1.6
17	gb|AC004377.1|AC004377 Drosophila melanogaster DNA sequence (P1 ...	42	1.6
18	gb|AC119874.12| Mus musculus chromosome 8, clone RP24-289B21, co...	40	6.2
19	ref|NG_001336.2| Homo sapiens T cell receptor gamma locus (TRG@)...	40	6.2
20	gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, compl...	40	6.2
21	ref|XM_857630.1| PREDICTED: Canis familiaris similar to 26S prot...	40	6.2
22	ref|XM_857610.1| PREDICTED: Canis familiaris similar to 26S prot...	40	6.2
23	ref|XM_857581.1| PREDICTED: Canis familiaris similar to 26S prot...	40	6.2
24	ref|XM_857557.1| PREDICTED: Canis familiaris similar to 26S prot...	40	6.2
25	ref|XM_538135.2| PREDICTED: Canis familiaris similar to 26S prot...	40	6.2
26	gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complet...	40	6.2
27	gb|AC131671.3| Mus musculus BAC clone RP23-312H8 from chromosome...	40	6.2
28	gb|AC124199.3| Mus musculus BAC clone RP23-312B17 from 8, comple...	40	6.2
29	gb|AC121772.2| Mus musculus BAC clone RP23-349L11 from 3, comple...	40	6.2
30	gb|AC117573.9| Mus musculus chromosome 3, clone RP23-30D1, compl...	40	6.2
31	emb|AL354868.10| Human DNA sequence from clone RP11-339A7 on chr...	40	6.2
32	emb|AL137781.18| Human DNA sequence from clone RP11-263K14 on ch...	40	6.2
33	gb|DQ230360.1| HIV-1 isolate 842 clone 30 from Uganda pol protei...	40	6.2
34	gb|DQ409765.1| HIV-1 isolate 8290047 from Australia reverse tran...	40	6.2
35	gb|U18916.2|SCE9781 Saccharomyces cerevisiae chromosome V cosmid...	40	6.2
36	gb|DQ011167.1| HIV-1 isolate 04ZASK142B1 from South Africa, comp...	40	6.2
37	gb|AF159056.1|AF159056 Homo sapiens T-cell gamma receptor locus,...	40	6.2
38	ref|NM_182124.2| Caenorhabditis elegans R166.5b (R166.5) mRNA, c...	40	6.2
39	ref|NM_063871.2| Caenorhabditis elegans R166.5a (R166.5) mRNA, c...	40	6.2
40	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
41	dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
42	gb|AY002139.1| HIV-1 isolate 070G02 from USA pol protein (pol) g...	40	6.2
43	gb|DQ331382.1| Synthetic construct Saccharomyces cerevisiae clon...	40	6.2
44	dbj|AK115616.1| Ciona intestinalis cDNA, clone:cilv008c24, full ...	40	6.2
45	emb|Z50795.1|CER166 Caenorhabditis elegans Cosmid R166, complete...	40	6.2

---

>gb|AY105643.1| Zea mays PCO067509 mRNA sequence
          Length = 1373

 Score =  299 bits (151), Expect = 4e-78
 Identities = 229/256 (89%)
 Strand = Plus / Minus

                                                                       
Query: 208 tggttgtcgcctcctttttggnnggatgcggtcctcctcaaantccattattcctccaga 267
           |||||| | ||||||||||||  ||| ||||||||| ||||| |||||||||||||||||
Sbjct: 942 tggttgcctcctcctttttggtcggacgcggtcctcttcaaaatccattattcctccaga 883

                                                                       
Query: 268 ttcagagagaaagtcgtcatgcccccgtaagtcactgtctgcctgcttacattgttcaac 327
           |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct: 882 ttcagagagaaactcgtcatgcccccgtaagtcaatgtctgcctgcttaaattgtttaac 823

                                                                       
Query: 328 ttcttgactgacttcttggcttcttccactctgtcctcaaattctttctggtgcttcttg 387
           ||||||| ||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 822 ttcttgattgattttttggcctcttccactctgtcttcaaattctttctggtgcttcttg 763

                                                                       
Query: 388 ttcaattcactagttgtatcagcccacttgattttctcctgaatttggtgtaataaacta 447
           ||||  |||||  |||| ||||||||||||||||||||||||||||| || || |  |||
Sbjct: 762 ttcacctcactcattgtgtcagcccacttgattttctcctgaatttgatgcaacagtcta 703

                           
Query: 448 tctgatgttcccaacc 463
           |||||||| |||||||
Sbjct: 702 tctgatgtccccaacc 687

---

>dbj|AK058214.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D11, full
           insert sequence
          Length = 710

 Score =  289 bits (146), Expect = 4e-75
 Identities = 235/265 (88%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                       
Query: 196 aaactatggcattggttgtcgcctcctttttggnnggatgcggtcctcctcaaantccat 255
           |||||||| ||||||||||||||||||||||||  ||||||||||||| ||||| |||||
Sbjct: 425 aaactatgccattggttgtcgcctcctttttggtcggatgcggtcctcttcaaaatccat 366

                                                                       
Query: 256 tattcctccagattcagagagaaagtcgtcatgcccccgtaagtcactgtctgcctgctt 315
           ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 365 tattcctccaggttcagagagaaagtcgtcatgcccccgtaagtcgatgtctgcctgctt 306

                                                                       
Query: 316 acattgttcaacttcttgactgacttcttggcttcttccactctgtcctcaaattctttc 375
           | |||||||||   ||||| ||| || ||||||||||| ||  |||| || || ||||||
Sbjct: 305 aaattgttcaa---cttgattgattttttggcttcttctaccttgtcttcgaactctttc 249

                                                                       
Query: 376 tggtgcttcttgttcaattcactagttgtatcagcccacttgattttctcctgaatttgg 435
           |||||||||||||||| ||||||  |||||||||||||||| |||||||||||||| || 
Sbjct: 248 tggtgcttcttgttcacttcactcattgtatcagcccacttaattttctcctgaatctga 189

                                    
Query: 436 tgtaataaactatctgatgttccca 460
           || |||||| |||| ||||||||||
Sbjct: 188 tgcaataaattatccgatgttccca 164

---

>gb|BT017720.1| Zea mays clone EL01N0447C01.c mRNA sequence
          Length = 1191

 Score =  266 bits (134), Expect = 6e-68
 Identities = 224/255 (87%)
 Strand = Plus / Minus

                                                                       
Query: 209 ggttgtcgcctcctttttggnnggatgcggtcctcctcaaantccattattcctccagat 268
           |||||||||||||| |||||  |||  |||||||| ||||| |||||||||||| |||||
Sbjct: 737 ggttgtcgcctcctctttggtcggacacggtcctcttcaaaatccattattcctacagat 678

                                                                       
Query: 269 tcagagagaaagtcgtcatgcccccgtaagtcactgtctgcctgcttacattgttcaact 328
           ||||||||  ||||||||||||| |||| |||  |||||||||||||| |||||||||||
Sbjct: 677 tcagagaggtagtcgtcatgccctcgtatgtcgatgtctgcctgcttaaattgttcaact 618

                                                                       
Query: 329 tcttgactgacttcttggcttcttccactctgtcctcaaattctttctggtgcttcttgt 388
           |||| | ||| || ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 617 tcttaattgattttttggcctcttccactctgtcttcaaattctttctggtgcttcttgt 558

                                                                       
Query: 389 tcaattcactagttgtatcagcccacttgattttctcctgaatttggtgtaataaactat 448
           |||  |||||  |||| ||||||||||||||||||||||||||||| || || |  ||||
Sbjct: 557 tcacatcactcattgtgtcagcccacttgattttctcctgaatttgatgcaacaggctat 498

                          
Query: 449 ctgatgttcccaacc 463
           |||||||||||||||
Sbjct: 497 ctgatgttcccaacc 483

---

>gb|AY107395.1| Zea mays PCO067507 mRNA sequence
          Length = 728

 Score =  262 bits (132), Expect = 9e-67
 Identities = 240/277 (86%)
 Strand = Plus / Minus

                                                                       
Query: 187 gctttatttaaactatggcattggttgtcgcctcctttttggnnggatgcggtcctcctc 246
           |||| ||| |||||| | || ||||||||||||||| |||||  |||  |||||||| ||
Sbjct: 330 gcttaattgaaactacgccagtggttgtcgcctcctctttggtcggacacggtcctcttc 271

                                                                       
Query: 247 aaantccattattcctccagattcagagagaaagtcgtcatgcccccgtaagtcactgtc 306
           ||| |||||||||||| |||||||||||||  ||||||||||||| |||| |||  ||||
Sbjct: 270 aaaatccattattcctacagattcagagaggtagtcgtcatgccctcgtatgtcgatgtc 211

                                                                       
Query: 307 tgcctgcttacattgttcaacttcttgactgacttcttggcttcttccactctgtcctca 366
           |||||||||| ||||||||||||||| | ||| || ||||| |||||||||||||| |||
Sbjct: 210 tgcctgcttaaattgttcaacttcttaattgattttttggcctcttccactctgtcttca 151

                                                                       
Query: 367 aattctttctggtgcttcttgttcaattcactagttgtatcagcccacttgattttctcc 426
           |||||||||||||||||||||||||  |||||  |||| |||||||| ||||||||||||
Sbjct: 150 aattctttctggtgcttcttgttcacatcactcattgtgtcagcccatttgattttctcc 91

                                                
Query: 427 tgaatttggtgtaataaactatctgatgttcccaacc 463
           |||||||| || || |  |||||||||||||||||||
Sbjct: 90  tgaatttgatgcaacaggctatctgatgttcccaacc 54

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  165 bits (83), Expect = 2e-37
 Identities = 104/112 (92%)
 Strand = Plus / Plus

                                                                            
Query: 220      cctttttggnnggatgcggtcctcctcaaantccattattcctccagattcagagagaaa 279
                |||||||||  ||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct: 18200802 cctttttggtcggatgcggtcctcttcaaaatccattattcctccaggttcagagagaaa 18200861

                                                                    
Query: 280      gtcgtcatgcccccgtaagtcactgtctgcctgcttacattgttcaacttct 331
                |||||||||||||||||||||  |||||||||||||| ||||||||||||||
Sbjct: 18200862 gtcgtcatgcccccgtaagtcgatgtctgcctgcttaaattgttcaacttct 18200913



 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                            
Query: 330      cttgactgacttcttggcttcttccactctgtcctcaaattctttctggtgcttcttgtt 389
                ||||| ||| || ||||||||||| ||  |||| || || ||||||||||||||||||||
Sbjct: 18201203 cttgattgattttttggcttcttctaccttgtcttcgaactctttctggtgcttcttgtt 18201262

                                                                            
Query: 390      caattcactagttgtatcagcccacttgattttctcctgaatttggtgtaataaactatc 449
                || ||||||  |||||||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 18201263 cacttcactcattgtatcagcccacttaattttctcctgaatctgatgcaataaattatc 18201322

                           
Query: 450      tgatgttccca 460
                 ||||||||||
Sbjct: 18201323 cgatgttccca 18201333



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 196      aaactatggcattggttgtcgcctcct 222
                |||||||| ||||||||||||||||||
Sbjct: 18200406 aaactatgccattggttgtcgcctcct 18200432

---

>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0477A12
          Length = 138141

 Score =  165 bits (83), Expect = 2e-37
 Identities = 104/112 (92%)
 Strand = Plus / Plus

                                                                          
Query: 220    cctttttggnnggatgcggtcctcctcaaantccattattcctccagattcagagagaaa 279
              |||||||||  ||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct: 136108 cctttttggtcggatgcggtcctcttcaaaatccattattcctccaggttcagagagaaa 136167

                                                                  
Query: 280    gtcgtcatgcccccgtaagtcactgtctgcctgcttacattgttcaacttct 331
              |||||||||||||||||||||  |||||||||||||| ||||||||||||||
Sbjct: 136168 gtcgtcatgcccccgtaagtcgatgtctgcctgcttaaattgttcaacttct 136219



 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                          
Query: 330    cttgactgacttcttggcttcttccactctgtcctcaaattctttctggtgcttcttgtt 389
              ||||| ||| || ||||||||||| ||  |||| || || ||||||||||||||||||||
Sbjct: 136509 cttgattgattttttggcttcttctaccttgtcttcgaactctttctggtgcttcttgtt 136568

                                                                          
Query: 390    caattcactagttgtatcagcccacttgattttctcctgaatttggtgtaataaactatc 449
              || ||||||  |||||||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 136569 cacttcactcattgtatcagcccacttaattttctcctgaatctgatgcaataaattatc 136628

                         
Query: 450    tgatgttccca 460
               ||||||||||
Sbjct: 136629 cgatgttccca 136639



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 196    aaactatggcattggttgtcgcctcct 222
              |||||||| ||||||||||||||||||
Sbjct: 135712 aaactatgccattggttgtcgcctcct 135738

---

>dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1218_C12
          Length = 105861

 Score =  165 bits (83), Expect = 2e-37
 Identities = 104/112 (92%)
 Strand = Plus / Plus

                                                                        
Query: 220  cctttttggnnggatgcggtcctcctcaaantccattattcctccagattcagagagaaa 279
            |||||||||  ||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct: 4045 cctttttggtcggatgcggtcctcttcaaaatccattattcctccaggttcagagagaaa 4104

                                                                
Query: 280  gtcgtcatgcccccgtaagtcactgtctgcctgcttacattgttcaacttct 331
            |||||||||||||||||||||  |||||||||||||| ||||||||||||||
Sbjct: 4105 gtcgtcatgcccccgtaagtcgatgtctgcctgcttaaattgttcaacttct 4156



 Score =  117 bits (59), Expect = 3e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                        
Query: 330  cttgactgacttcttggcttcttccactctgtcctcaaattctttctggtgcttcttgtt 389
            ||||| ||| || ||||||||||| ||  |||| || || ||||||||||||||||||||
Sbjct: 4446 cttgattgattttttggcttcttctaccttgtcttcgaactctttctggtgcttcttgtt 4505

                                                                        
Query: 390  caattcactagttgtatcagcccacttgattttctcctgaatttggtgtaataaactatc 449
            || ||||||  |||||||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 4506 cacttcactcattgtatcagcccacttaattttctcctgaatctgatgcaataaattatc 4565

                       
Query: 450  tgatgttccca 460
             ||||||||||
Sbjct: 4566 cgatgttccca 4576



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 196  aaactatggcattggttgtcgcctcct 222
            |||||||| ||||||||||||||||||
Sbjct: 3649 aaactatgccattggttgtcgcctcct 3675

---

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 326     acttcttgactgacttcttggc 347
               ||||||||||||||||||||||
Sbjct: 2802288 acttcttgactgacttcttggc 2802309

---

>gb|AC078816.16| Homo sapiens 3 BAC RP11-600P18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 183861

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 311   tgcttacattgttcaacttctt 332
             ||||||||||||||||||||||
Sbjct: 66716 tgcttacattgttcaacttctt 66737

---

>gb|AF411849.1|AF411849S1 Homo sapiens USH3 region, partial sequence
          Length = 198334

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 311    tgcttacattgttcaacttctt 332
              ||||||||||||||||||||||
Sbjct: 165773 tgcttacattgttcaacttctt 165794

---

>emb|CR388163.10| Zebrafish DNA sequence from clone CH211-247L8 in linkage group 15,
             complete sequence
          Length = 182247

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 370   tctttctggtgcttcttgttc 390
             |||||||||||||||||||||
Sbjct: 46557 tctttctggtgcttcttgttc 46577

---

>emb|BX663525.6| Zebrafish DNA sequence from clone DKEY-97A13 in linkage group 2,
             complete sequence
          Length = 261927

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 258   ttcctccagattcagagagaaagtc 282
             |||||||||||| ||||||||||||
Sbjct: 54969 ttcctccagatttagagagaaagtc 54993

---

>ref|NM_137840.2| Drosophila melanogaster CG4294-RA (CG4294), mRNA
          Length = 4185

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 336  tgacttcttggcttcttccac 356
            |||||||||||||||||||||
Sbjct: 3177 tgacttcttggcttcttccac 3157

---

>ref|XM_694098.1| PREDICTED: Danio rerio similar to MGC81165 protein (LOC570598), mRNA
          Length = 2814

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 258  ttcctccagattcagagagaaagtc 282
            |||||||||||| ||||||||||||
Sbjct: 2312 ttcctccagatttagagagaaagtc 2336

---

>gb|AC008349.2|AC008349 Drosophila melanogaster, chromosome 2R, region 58E-58E, BAC clone
              BACR01E01, complete sequence
          Length = 173373

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    tgacttcttggcttcttccac 356
              |||||||||||||||||||||
Sbjct: 157733 tgacttcttggcttcttccac 157753

---

>gb|AE003458.3| Drosophila melanogaster chromosome 2R, section 66 of 73 of the
            complete sequence
          Length = 302225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 336  tgacttcttggcttcttccac 356
            |||||||||||||||||||||
Sbjct: 8413 tgacttcttggcttcttccac 8433

---

>gb|AC004377.1|AC004377 Drosophila melanogaster DNA sequence (P1 DS00837 (D87)), complete
             sequence
          Length = 81677

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 336   tgacttcttggcttcttccac 356
             |||||||||||||||||||||
Sbjct: 56136 tgacttcttggcttcttccac 56116

---

>gb|AC119874.12| Mus musculus chromosome 8, clone RP24-289B21, complete sequence
          Length = 170702

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 365   caaattctttctggtgcttcttgt 388
             |||||||||||| |||||||||||
Sbjct: 69440 caaattctttcttgtgcttcttgt 69417

---

>ref|NG_001336.2| Homo sapiens T cell receptor gamma locus (TRG@) on chromosome 7
          Length = 140728

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    ctttatttaaactatggcat 207
              ||||||||||||||||||||
Sbjct: 116597 ctttatttaaactatggcat 116578

---

>gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, complete sequence
          Length = 225321

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   cttgattttctcctgaattt 433
             ||||||||||||||||||||
Sbjct: 94600 cttgattttctcctgaattt 94619

---

>ref|XM_857630.1| PREDICTED: Canis familiaris similar to 26S proteasome non-ATPase
           regulatory subunit 10 (26S proteasome regulatory subunit
           p28) (Gankyrin), transcript variant 5 (LOC481014), mRNA
          Length = 1397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 343 ttggcttcttccactctgtcctca 366
           ||||||||||||||||| ||||||
Sbjct: 528 ttggcttcttccactctctcctca 505

---

>ref|XM_857610.1| PREDICTED: Canis familiaris similar to 26S proteasome non-ATPase
           regulatory subunit 10 (26S proteasome regulatory subunit
           p28) (Gankyrin), transcript variant 4 (LOC481014), mRNA
          Length = 1336

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 343 ttggcttcttccactctgtcctca 366
           ||||||||||||||||| ||||||
Sbjct: 467 ttggcttcttccactctctcctca 444

---

>ref|XM_857581.1| PREDICTED: Canis familiaris similar to 26S proteasome non-ATPase
           regulatory subunit 10 (26S proteasome regulatory subunit
           p28) (Gankyrin), transcript variant 3 (LOC481014), mRNA
          Length = 1324

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 343 ttggcttcttccactctgtcctca 366
           ||||||||||||||||| ||||||
Sbjct: 455 ttggcttcttccactctctcctca 432

---

>ref|XM_857557.1| PREDICTED: Canis familiaris similar to 26S proteasome non-ATPase
           regulatory subunit 10 (26S proteasome regulatory subunit
           p28) (Gankyrin), transcript variant 2 (LOC481014), mRNA
          Length = 1313

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 343 ttggcttcttccactctgtcctca 366
           ||||||||||||||||| ||||||
Sbjct: 444 ttggcttcttccactctctcctca 421

---

>ref|XM_538135.2| PREDICTED: Canis familiaris similar to 26S proteasome non-ATPase
           regulatory subunit 10 (26S proteasome regulatory subunit
           p28) (Gankyrin), transcript variant 1 (LOC481014), mRNA
          Length = 1477

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 343 ttggcttcttccactctgtcctca 366
           ||||||||||||||||| ||||||
Sbjct: 608 ttggcttcttccactctctcctca 585

---

>gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complete sequence
          Length = 171816

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ctttatttaaactatggcat 207
             ||||||||||||||||||||
Sbjct: 78250 ctttatttaaactatggcat 78269

---

>gb|AC131671.3| Mus musculus BAC clone RP23-312H8 from chromosome 3, complete sequence
          Length = 195851

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   attctttctggtgcttcttg 387
             ||||||||||||||||||||
Sbjct: 93114 attctttctggtgcttcttg 93133

---

>gb|AC124199.3| Mus musculus BAC clone RP23-312B17 from 8, complete sequence
          Length = 157393

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 365  caaattctttctggtgcttcttgt 388
            |||||||||||| |||||||||||
Sbjct: 3171 caaattctttcttgtgcttcttgt 3194

---

>gb|AC121772.2| Mus musculus BAC clone RP23-349L11 from 3, complete sequence
          Length = 201923

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 418    attttctcctgaatttggtgtaat 441
              ||||||| ||||||||||||||||
Sbjct: 199483 attttcttctgaatttggtgtaat 199460

---

>gb|AC117573.9| Mus musculus chromosome 3, clone RP23-30D1, complete sequence
          Length = 239439

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 418   attttctcctgaatttggtgtaat 441
             ||||||| ||||||||||||||||
Sbjct: 91397 attttcttctgaatttggtgtaat 91374

---

>emb|AL354868.10| Human DNA sequence from clone RP11-339A7 on chromosome 6 Contains a
             ribosomal protein L21 (RPL21) pseudogene, complete
             sequence
          Length = 164018

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 339   cttcttggcttcttccactctgtc 362
             ||||||| ||||||||||||||||
Sbjct: 42777 cttcttgccttcttccactctgtc 42754

---

>emb|AL137781.18| Human DNA sequence from clone RP11-263K14 on chromosome 13q22.3-31.3,
             complete sequence
          Length = 147978

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   tgaatgctttatttaaacta 201
             ||||||||||||||||||||
Sbjct: 85981 tgaatgctttatttaaacta 86000

---

>gb|DQ230360.1| HIV-1 isolate 842 clone 30 from Uganda pol protein (pol) gene,
           partial cds
          Length = 1302

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 ttctttctggtgcttcttgt 388
           ||||||||||||||||||||
Sbjct: 969 ttctttctggtgcttcttgt 950

---

>gb|DQ409765.1| HIV-1 isolate 8290047 from Australia reverse transcriptase (pol)
           gene, partial cds
          Length = 527

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 ttctttctggtgcttcttgt 388
           ||||||||||||||||||||
Sbjct: 507 ttctttctggtgcttcttgt 488

---

>gb|U18916.2|SCE9781 Saccharomyces cerevisiae chromosome V cosmids 9781, 8198,  9115, 9981,
             and lambda clones 3955 and 6052
          Length = 68301

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     taaataaatgccgcagtaaa 28
             ||||||||||||||||||||
Sbjct: 14256 taaataaatgccgcagtaaa 14275

---

>gb|DQ011167.1| HIV-1 isolate 04ZASK142B1 from South Africa, complete genome
          Length = 9057

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  ttctttctggtgcttcttgt 388
            ||||||||||||||||||||
Sbjct: 2629 ttctttctggtgcttcttgt 2610

---

>gb|AF159056.1|AF159056 Homo sapiens T-cell gamma receptor locus, complete sequence
          Length = 140691

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    ctttatttaaactatggcat 207
              ||||||||||||||||||||
Sbjct: 116564 ctttatttaaactatggcat 116545

---

>ref|NM_182124.2| Caenorhabditis elegans R166.5b (R166.5) mRNA, complete cds
          Length = 2456

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 318 attgttcaacttcttgactg 337
           ||||||||||||||||||||
Sbjct: 948 attgttcaacttcttgactg 967

---

>ref|NM_063871.2| Caenorhabditis elegans R166.5a (R166.5) mRNA, complete cds
          Length = 4412

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  attgttcaacttcttgactg 337
            ||||||||||||||||||||
Sbjct: 992  attgttcaacttcttgactg 1011

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 369      ttctttctggtgcttcttgttcaa 392
                |||||||||| |||||||||||||
Sbjct: 42339027 ttctttctggggcttcttgttcaa 42339004

---

>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 369    ttctttctggtgcttcttgttcaa 392
              |||||||||| |||||||||||||
Sbjct: 110984 ttctttctggggcttcttgttcaa 110961

---

>gb|AY002139.1| HIV-1 isolate 070G02 from USA pol protein (pol) gene, partial cds
          Length = 984

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 ttctttctggtgcttcttgt 388
           ||||||||||||||||||||
Sbjct: 969 ttctttctggtgcttcttgt 950

---

>gb|DQ331382.1| Synthetic construct Saccharomyces cerevisiae clone FLH149181.01X
            YER113C gene, complete sequence
          Length = 2121

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    taaataaatgccgcagtaaa 28
            ||||||||||||||||||||
Sbjct: 1683 taaataaatgccgcagtaaa 1664

---

>dbj|AK115616.1| Ciona intestinalis cDNA, clone:cilv008c24, full insert sequence
          Length = 1524

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 ctttctggtgcttcttgttc 390
           ||||||||||||||||||||
Sbjct: 726 ctttctggtgcttcttgttc 707

---

>emb|Z50795.1|CER166 Caenorhabditis elegans Cosmid R166, complete sequence
          Length = 32012

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   attgttcaacttcttgactg 337
             ||||||||||||||||||||
Sbjct: 18844 attgttcaacttcttgactg 18825


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,434,231
Number of Sequences: 3902068
Number of extensions: 4434231
Number of successful extensions: 82109
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81993
Number of HSP's gapped (non-prelim): 115
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---