ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25e21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAP3_ORYSA (Q7XBW5) Probable plastid-lipid associated protein 3,... 37 0.026
2IF2_STRAW (Q82K53) Translation initiation factor IF-2 33 0.37
3IF2_CORGL (Q8NP40) Translation initiation factor IF-2 32 0.64
4BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP... 30 1.9
5IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2 30 1.9
6HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated... 30 1.9
7TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni... 30 2.4
8SNI2_YEAST (P38163) Protein SNI2 (Suppressor of RHO3 protein 77) 30 3.2
9PARG_RAT (Q9QYM2) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143) 30 3.2
10GCP60_HUMAN (Q9H3P7) Golgi resident protein GCP60 (Acyl-CoA-bind... 30 3.2
11GRASP_RAT (Q8R4T5) General receptor for phosphoinositides 1-asso... 30 3.2
12IF2_CORJK (Q4JV51) Translation initiation factor IF-2 30 3.2
13LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa... 29 4.1
14FA44A_HUMAN (Q8NFC6) Protein FAM44A 29 5.4
15CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding p... 29 5.4
16CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding... 29 5.4
17GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outg... 29 5.4
18PRGR_RABIT (P06186) Progesterone receptor (PR) 29 5.4
19ADRB1_HUMAN (P08588) Beta-1 adrenergic receptor (Beta-1 adrenoce... 29 5.4
20MRP6_RAT (O88269) Multidrug resistance-associated protein 6 (ATP... 29 5.4
21CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding... 29 5.4
22MTDH1_STYHU (Q43137) Probable mannitol dehydrogenase 1 (EC 1.1.1... 28 7.1
23EPN1_RAT (O88339) Epsin-1 (EPS-15-interacting protein 1) 28 7.1
24IF2_PROMM (Q7V5M4) Translation initiation factor IF-2 28 7.1
25ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulen... 28 7.1
26ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulen... 28 7.1
27YCE7_YEAST (P25576) Hypothetical 29.7 kDa protein in APA1/DTP-PD... 28 7.1
28ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulen... 28 7.1
29HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated c... 28 7.1
30RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence fac... 28 7.1
31IF2_COREF (Q8FPA7) Translation initiation factor IF-2 28 7.1
32DOP1_EMENI (Q9Y7B3) Protein dopey 28 7.1
33HMX_STRPU (Q26656) Homeobox protein Hmx (SpHmx) (H6-like) (Fragm... 28 9.2
34KLH17_RAT (Q8K430) Kelch-like protein 17 (Actinfilin) 28 9.2
35KLH17_MOUSE (Q6TDP3) Kelch-like protein 17 (Actinfilin) 28 9.2
36ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (V... 28 9.2
37EPN1_MOUSE (Q80VP1) Epsin-1 (EPS-15-interacting protein 1) (Inte... 28 9.2

>PAP3_ORYSA (Q7XBW5) Probable plastid-lipid associated protein 3, chloroplast|
           precursor
          Length = 374

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -2

Query: 390 DLWGSIAAPQPKSSGKALKPAAANNDDLWGAIAAPPP 280
           D WG    P+P+S+  A  P    NDD WG   APPP
Sbjct: 98  DEWGEPGVPEPQSTSAADPPT---NDDEWGGDPAPPP 131



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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 372 AAPQPKSSGK-ALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLG 208
           AAP P+   K A +PA A          APP A  A   A+SG   GA P  PK G
Sbjct: 106 AAPGPRPGPKPAPRPAPAAPAPAAPEFTAPPSAPAAPAAAASGPRPGARPGAPKPG 161



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>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -2

Query: 372 AAPQP----KSSGKALKPAAANNDDLWGAI--AAPPPATKARPLASSGRGRGAXPAQP 217
           AAP+P    K +  A KPA A       A   AAP P  +A+P A++  G  A PA P
Sbjct: 79  AAPKPGAPAKPAAPAAKPAPAAPSAASAAKPGAAPKPGVQAKPAAAAKPGAPAKPAAP 136



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 372 AAPQPKSSGKALKPAAANNDDLWGAIAAPPP---ATKARPLASSG 247
           AAP    SG A KPAAA       A + P P   A KA P A  G
Sbjct: 137 AAPSAAKSGSAPKPAAAAKP----AFSGPTPGDAAKKAEPAAKPG 177



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>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent|
            isoleucine adenylase (IleA) (Isoleucine activase);
            ATP-dependent cysteine adenylase (CysA) (Cysteine
            activase); ATP-dependent leucine adenylase (LeuA)
            (Leucine activase); ATP-depe
          Length = 5255

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 26   LYNGQSSSNVHVVINDWASLQRGSPRHVKDKRKGEKVASLYNNCIMALYMPVEEVLPI 199
            LY G+S    H+   D+A  +    R  + KR+ E     Y   I  L +P++   P+
Sbjct: 2848 LYEGKSLKPFHIQYKDYAEWENSHARSEELKRQEEYWLKTYKGDIPVLDLPIDHKRPL 2905



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>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2|
          Length = 913

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 24/63 (38%), Positives = 32/63 (50%)
 Frame = -2

Query: 375 IAAPQPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLGAQXI 196
           +AA QP +  +A +PA+        A AAP P T ARP +++   R A PA P   A   
Sbjct: 187 VAASQPAAEVRA-EPASERP----AAAAAPAPRTDARPQSAAAAPRSA-PATPDAAAPRG 240

Query: 195 GRT 187
            RT
Sbjct: 241 RRT 243



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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 345 KALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLGAQXIGRTSS 181
           +A +P +A+   L   + AP PA  ARP +SS          P+LG     RT++
Sbjct: 787 RASRPLSASQPSLPHGVPAPSPAASARPASSS---------TPRLGPAPTARTAA 832



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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 20/56 (35%), Positives = 23/56 (41%)
 Frame = -2

Query: 369 APQPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLGAQ 202
           A  P ++     PAAA N    GA  AP PA       S   G GA  A P  G +
Sbjct: 288 AGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVK 343



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>SNI2_YEAST (P38163) Protein SNI2 (Suppressor of RHO3 protein 77)|
          Length = 1010

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -2

Query: 393  DDLWGSIAAPQPKSSGKALKPAAANNDDLWGAIAAPPPATK----ARPLASSGRGRG 235
            D+L G I  P+ K    A+     ++     A    PP TK    ARP+ SSGR  G
Sbjct: 904  DELLGGIERPESKYEESAIARGCISSSSS-NAARKLPPGTKDHRYARPVRSSGRSNG 959



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>PARG_RAT (Q9QYM2) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143)|
          Length = 972

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
 Frame = +3

Query: 282 AGVLQWHPIGRHYSLLLASKPXQMILAEVQLLN-------PRDHHHHCSDTE 416
           AGV +WH  G     L AS+P  +  A  QL N       P D H   SDT+
Sbjct: 150 AGVCKWHSAGERAEQLSASEPSAVTQAPKQLSNANIDQSPPTDGH---SDTD 198



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>GCP60_HUMAN (Q9H3P7) Golgi resident protein GCP60 (Acyl-CoA-binding|
           domain-containing protein 3) (Golgi phosphoprotein 1)
           (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1)
           (PBR- and PKA-associated protein 7) (Peripherial
           benzodiazepine receptor-asso
          Length = 527

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/52 (36%), Positives = 20/52 (38%)
 Frame = -2

Query: 348 GKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLGAQXIG 193
           G  L P         GA   PPP     P   SGRG GA   QP+ G    G
Sbjct: 15  GLTLSPDPEERPGAEGAPLLPPPLPPPSP-PGSGRGPGASGEQPEPGEAAAG 65



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>GRASP_RAT (Q8R4T5) General receptor for phosphoinositides 1-associated|
           scaffold protein (GRP1-associated scaffold protein)
           (Tamalin) (95 kDa postsynaptic density protein
           discs-large ZO-1 domain-containing protein) (PSD-95 PDZ
           domain-containing protein)
          Length = 394

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -2

Query: 372 AAPQPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSG 247
           AAP P     A  P  A  D+L+ A+    PA   R LA SG
Sbjct: 33  AAPTPSGPPAAAAPPGAPGDELYAALEDYHPAELYRALAVSG 74



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>IF2_CORJK (Q4JV51) Translation initiation factor IF-2|
          Length = 922

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = -2

Query: 372 AAPQPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGR------GRGAXPAQPKL 211
           A P PK + KA   AAA      G    P P     P+A +G         G  PA PK 
Sbjct: 69  AKPGPKPAAKAAPKAAAKPGPKPGPKPGPQPVKNTNPVAGAGTRPTSTVKPGEKPA-PKP 127

Query: 210 GAQXIGRTSS 181
           GA+   +T++
Sbjct: 128 GAKPAPKTAA 137



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>LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa autoantigen|
           D1) (64 kDa autoantigen 1D) (64 kDa autoantigen 1D3)
           (Thyroid-associated ophthalmopathy autoantigen) (Smooth
           muscle leiomodin) (SM-Lmod)
          Length = 572

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -2

Query: 381 GSIAAPQPKSSGK-ALKPAAANNDDLWGAIAAPPPATK--ARPLASSGRGRGAXPA-QPK 214
           G++A   PK S + + KP+  N+    GA AAPPP     A PL          PA Q K
Sbjct: 474 GAVAKGSPKPSPQPSPKPSPKNSPKKGGAPAAPPPPPPPLAPPLIMENLKNSLSPATQRK 533

Query: 213 LG 208
           +G
Sbjct: 534 MG 535



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>FA44A_HUMAN (Q8NFC6) Protein FAM44A|
          Length = 502

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 288 PPPATKARPLASSGRGRGAXPAQPKLGAQXIGRTSSTGM 172
           PPP   A P A    G GA    P+L A  +    S G+
Sbjct: 28  PPPGPGAGPGAGGAGGAGAGAGDPQLVAMIVNHLKSQGL 66



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>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
 Frame = -2

Query: 369 APQPKSSGKALKPAAANNDDLWGAIAAPP--------------PATKARPLASSGRGRGA 232
           +P P S  + + PA      LW A   PP              P++  RPL SS    G 
Sbjct: 94  SPAPASPARPVSPAPGRRLSLWAAPPGPPLSGGLSPDSKPGGAPSSSRRPLLSSPSWGGP 153

Query: 231 XP 226
            P
Sbjct: 154 EP 155



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>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
 Frame = -2

Query: 369 APQPKSSGKALKPAAANNDDLWGAIAAPP--------------PATKARPLASSGRGRGA 232
           +P P S  + + PA      LW A   PP              P++  RPL SS    G 
Sbjct: 94  SPAPASPARPVSPAPGRRLSLWAAPPGPPLSGGLSPDSKPGGAPSSSRRPLLSSPSWGGP 153

Query: 231 XP 226
            P
Sbjct: 154 EP 155



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>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 1008

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -2

Query: 360 PKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLGAQXIGRTSS 181
           P+SSGK    ++   D      A PP A KA P      G+G   +  K G    G+ + 
Sbjct: 481 PESSGKTNPVSSGPGDPRSLGTAGPPSAVKAEPATG---GKGDPLSSEKAGLVASGKAAP 537

Query: 180 T 178
           T
Sbjct: 538 T 538



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>PRGR_RABIT (P06186) Progesterone receptor (PR)|
          Length = 930

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 297 IAAPPPATKARPLASSGRGRGAXPAQPKLGAQXIGRTSSTGM*SAMIQLLYK 142
           +AAPPP +    + SS  G  A  A P  G+  +  +SS+G  S +  +LYK
Sbjct: 418 LAAPPPPSLPPRVPSSRPGEAAVAASP--GSASVSSSSSSG--STLECILYK 465



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>ADRB1_HUMAN (P08588) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 477

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 381 GSIAAPQPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGA 232
           G +A P P  S     P AA++DD    + A PPA    P A    G  A
Sbjct: 413 GCLARPGPPPS-----PGAASDDDDDDVVGATPPARLLEPWAGCNGGAAA 457



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>MRP6_RAT (O88269) Multidrug resistance-associated protein 6 (ATP-binding|
            cassette sub-family C member 6) (MRP-like protein 1)
            (MLP-1)
          Length = 1502

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
 Frame = -2

Query: 369  APQPKSSGKALKPAAANNDDLWGAIAAPPPATK-ARPLASSGRGRGAXPAQPKLGAQXIG 193
            A QP   G+    AAA +DDL G      P  +  RP  S         ++ ++    + 
Sbjct: 852  ARQPAGEGEGEAHAAATSDDLGGFSGGGTPTRRPERPRPSDAAPVKGSTSEAQM-EPSLD 910

Query: 192  RTSSTGM*SAMIQLLYKDATFSPFLLSLTCLGDPLC 85
                TG+ +    + Y     + +L  L  +G PLC
Sbjct: 911  DVEVTGLTAGEDSVQYGRVKSATYLSYLRAVGTPLC 946



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>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
           (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
 Frame = -2

Query: 369 APQPKSSGKALKPAAANNDDLWGAIAAPP--------------PATKARPLASSGRGRGA 232
           +P P S  + + PA      LW A   PP              P++  RPL SS    G 
Sbjct: 94  SPAPASPARPVSPAPGRRLSLWAAPPGPPLSGGLSPDSKPGGAPSSSRRPLLSSPSWGGP 153

Query: 231 XP 226
            P
Sbjct: 154 EP 155



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>MTDH1_STYHU (Q43137) Probable mannitol dehydrogenase 1 (EC 1.1.1.255)|
           (NAD-dependent mannitol dehydrogenase 1)
          Length = 354

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 8   DYTIVILYNGQSSSNVHVVINDW 76
           D T+ ILY G   S++H V NDW
Sbjct: 32  DVTLKILYCGVCHSDLHTVKNDW 54



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>EPN1_RAT (O88339) Epsin-1 (EPS-15-interacting protein 1)|
          Length = 575

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = -2

Query: 390 DLWGSIAAPQPKSSGKALKPAAANNDDLWGAIAAPPPATK---ARPLASSG-RGRGAXPA 223
           D WG      P S   A+ P AA   D WGA A PP A     A P  +SG   R A P 
Sbjct: 274 DPWGG-----PASVPTAV-PVAAAASDPWGAPAVPPAADPWGGAAPTPASGDPWRPAAPT 327

Query: 222 QPKL 211
            P +
Sbjct: 328 GPSV 331



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>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
 Frame = -2

Query: 369 APQPKSSGKA---LKPAAANNDDLWGAIAA-----------PPPATKARPLASSGRGRGA 232
           AP P+S+ K    + P+A   D   G  +            P P   +RP + +  GR A
Sbjct: 167 APTPRSANKPSSPVPPSAGGKDPRAGQTSTTSKATTVSGGGPRPKIVSRPQSPTAPGRSA 226

Query: 231 XPAQPKLGAQ 202
            PA+P + ++
Sbjct: 227 PPAKPSIPSE 236



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>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 252

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
 Frame = -2

Query: 321 NNDDLWGAIAAPPPATKARPLAS----------SGRGRGAXPAQP 217
           ++DD W     P PA +ARP A+          +G G GA P+ P
Sbjct: 78  DDDDDWPDSPPPEPAPEARPTAAAPRPRSPPPGAGPGGGADPSHP 122



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>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 245

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
 Frame = -2

Query: 321 NNDDLWGAIAAPPPATKARPLAS----------SGRGRGAXPAQP 217
           ++DD W     P PA +ARP A+          +G G GA P+ P
Sbjct: 71  DDDDDWPDSPPPEPAPEARPTAAAPRPRSPPPGAGPGGGANPSHP 115



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>YCE7_YEAST (P25576) Hypothetical 29.7 kDa protein in APA1/DTP-PDI1 intergenic|
           region
          Length = 258

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 47  SNVHVVINDWASLQRGSPRHVKDKRKGEKVASLYNNCIMALY 172
           + +HV+ ND+ +L+  S   +++K K  +V SL +   + +Y
Sbjct: 206 ARIHVMQNDYPALRNVSSSEIRNKLKNGQVESLKDELPLCIY 247



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>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 263

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
 Frame = -2

Query: 321 NNDDLWGAIAAPPPATKARPLAS----------SGRGRGAXPAQP 217
           ++DD W     P PA +ARP A+          +G G GA P+ P
Sbjct: 77  DDDDDWPDSPPPEPAPEARPTAAAPRPRSPPPGAGPGGGANPSHP 121



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>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 345 KALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXP 226
           +A +P +A+   L     AP PA  ARP +SS    G  P
Sbjct: 787 RASRPLSASQPSLPHGAPAPSPAASARPASSSTPRLGPAP 826



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>RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)|
          Length = 248

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
 Frame = -2

Query: 321 NNDDLWGAIAAPPPATKARPLASS----------GRGRGAXPAQP 217
           ++DD W     P PA +ARP A++          G G GA P+ P
Sbjct: 77  DDDDDWPDSPPPEPAPEARPTAAAPRPRPPPPGVGPGGGADPSHP 121



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>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = -2

Query: 369 APQPKSSGKALKPAAANNDDLWGAIAAPPPA------TKARPLASSGRGRGAXPAQP 217
           AP PK  G A KP A       GA+AAP P       T A+P A         PA+P
Sbjct: 76  APAPKP-GTAQKPTAPTP----GAVAAPKPGTAAAKPTPAKPAAPKPTAAKPAPAKP 127



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>DOP1_EMENI (Q9Y7B3) Protein dopey|
          Length = 1858

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
 Frame = -2

Query: 393 DDLWGSIAAPQPKSSGKALKPAAANNDDLWGAIAAPPP-----ATKARPLASSGRGRGAX 229
           DDL   I A    ++G   +   + N  LW  +  P P     + +ARP  SS   + A 
Sbjct: 331 DDLQRLIVA----AAGVVSRRDMSLNRRLWAWLLGPDPVGDRASFEARPSISSTASKTAA 386

Query: 228 PAQPKLGAQXIGRTSSTGM*SAMIQLLYKDATF-----SPFLLSLTCL 100
            ++    +Q   R     + S ++QLL +D         PF ++L+ +
Sbjct: 387 ESEELSQSQYFSRFGLQPLASGLLQLLKRDTELPSEKAKPFRITLSLM 434



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>HMX_STRPU (Q26656) Homeobox protein Hmx (SpHmx) (H6-like) (Fragment)|
          Length = 405

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 405 YNDDDDLWGSIAAP--QPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRG 235
           Y DDDD + +   P  QP++ G +++   +  D    +  +PP +  +  ++S+G   G
Sbjct: 52  YQDDDDSYRTHTPPPSQPRTKGFSIESILSPTDKHRKSPRSPPMSPSSPSMSSNGYSEG 110



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>KLH17_RAT (Q8K430) Kelch-like protein 17 (Actinfilin)|
          Length = 640

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = -2

Query: 363 QPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLGAQXI 196
           QP+    A +  +  +        APPP     P A   R R A PA P  GA  +
Sbjct: 2   QPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPAPEAERARPRQARPAAPMEGAMQL 57



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>KLH17_MOUSE (Q6TDP3) Kelch-like protein 17 (Actinfilin)|
          Length = 640

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = -2

Query: 363 QPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLGAQXI 196
           QP+    A +  +  +        APPP     P A   R R A PA P  GA  +
Sbjct: 2   QPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPAPEAERARPRQARPAAPMEGAMQL 57



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>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 360 PKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKLGAQXIGRTSS 181
           P+SSG+A +P AA    +   + +PP A  A  +++S    G  P    + A    R+  
Sbjct: 402 PQSSGRAARPRAA----VAPRVRSPPRAAAAPVVSASADAAGPAPPAVPVDAHRAPRSRM 457

Query: 180 T 178
           T
Sbjct: 458 T 458



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>EPN1_MOUSE (Q80VP1) Epsin-1 (EPS-15-interacting protein 1)|
           (Intersectin-EH-binding protein 1) (Ibp1)
          Length = 566

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = -2

Query: 390 DLWGSIAAPQPKSSGKALKPAAANNDDLWGAIAAPPPATKARPLASSGRGRGAXPAQPKL 211
           D WG   AP   ++G+   P    + D    ++ PP +    P  +     G  PA+P  
Sbjct: 323 DPWGGTPAP---AAGEGPTPDPWGSSDGGAPVSGPPSSDPWAPAPAFSDPWGGSPAKPSS 379

Query: 210 GAQXIG 193
               +G
Sbjct: 380 NGTAVG 385


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,336,213
Number of Sequences: 219361
Number of extensions: 1313379
Number of successful extensions: 3777
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 3564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3764
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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