ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24p14 |
|---|---|
| Clone Library Name | barley_pub |
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTA 396 ++ ++ +P A ++IG G I IR SGA+I I E + G + + I G+ Q+Q A Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447 Query: 395 QQLIKN 378 Q L++N Sbjct: 448 QYLLQN 453
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTA 396 ++ ++ +P A ++IG G I IR SGA+I I E + G + + I G+ Q+Q A Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447 Query: 395 QQLIKN 378 Q L++N Sbjct: 448 QYLLQN 453
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTA 396 ++ ++ +P A ++IG G I IR SGA+I I E + G + + I G+ Q+Q A Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447 Query: 395 QQLIKN 378 Q L++N Sbjct: 448 QYLLQN 453
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTA 396 ++ ++ +P A ++IG G I IR SGA+I I E + G + + I G+ Q+Q A Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447 Query: 395 QQLIKN 378 Q L++N Sbjct: 448 QYLLQN 453
>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = -2 Query: 572 QLSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPGE--MTVEIAGSASQVQT 399 Q + ++ +P + +IG GANI+ IR+ SGA I I V G V I GSA+ + Sbjct: 279 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISL 338 Query: 398 AQQLI 384 AQ LI Sbjct: 339 AQYLI 343 Score = 32.7 bits (73), Expect = 0.75 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = -2 Query: 530 AVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQQLIKNFMAE 366 ++IG G ++ IR+ SGA I+I EG E + + G + + A +I + + E Sbjct: 27 SIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81
>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = -2 Query: 572 QLSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPGE--MTVEIAGSASQVQT 399 Q + ++ +P + +IG GANI+ IR+ SGA I I V G V I GSA+ + Sbjct: 279 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISL 338 Query: 398 AQQLI 384 AQ LI Sbjct: 339 AQYLI 343 Score = 32.7 bits (73), Expect = 0.75 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = -2 Query: 530 AVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQQLIKNFMAE 366 ++IG G ++ IR+ SGA I+I EG E + + G + + A +I + + E Sbjct: 27 SIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81
>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic| acid-binding protein SUB2.3) Length = 356 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = -2 Query: 572 QLSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPGE--MTVEIAGSASQVQT 399 Q + ++ +P + +IG GANI+ IR+ SGA I I V G V I GSA+ + Sbjct: 279 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISL 338 Query: 398 AQQLI 384 AQ LI Sbjct: 339 AQYLI 343 Score = 32.7 bits (73), Expect = 0.75 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = -2 Query: 530 AVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQQLIKNFMAE 366 ++IG G ++ IR+ SGA I+I EG E + + G + + A +I + + E Sbjct: 27 SIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81
>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)| Length = 365 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTAQ 393 S ++ +P +IG GA I+ IR+ SGA I I V G + V I GSA+ + AQ Sbjct: 289 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 348 Query: 392 QLI 384 LI Sbjct: 349 YLI 351 Score = 33.1 bits (74), Expect = 0.58 Identities = 17/55 (30%), Positives = 31/55 (56%) Frame = -2 Query: 530 AVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQQLIKNFMAE 366 ++IG G ++ +R+ SGA I+I EG E + +AG + + A +I + + E Sbjct: 27 SIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81
>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative| heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) Length = 362 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTAQ 393 S ++ +P +IG GA I+ IR+ SGA I I V G + V I GSA+ + AQ Sbjct: 286 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 345 Query: 392 QLI 384 LI Sbjct: 346 YLI 348 Score = 33.1 bits (74), Expect = 0.58 Identities = 17/55 (30%), Positives = 31/55 (56%) Frame = -2 Query: 530 AVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQQLIKNFMAE 366 ++IG G ++ +R+ SGA I+I EG E + +AG + + A +I + + E Sbjct: 27 SIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81
>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein| Length = 606 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -2 Query: 560 KMQVPLSYADAVIGSAGANISYIRKHSGATISIQ-EGVPGEMTVEIAGSASQVQTAQQLI 384 +M+VP +IG GANI +RK +GA I + E V E + I+G QV A+ I Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115 Query: 383 KNFMAE 366 + E Sbjct: 116 HQILTE 121 Score = 33.5 bits (75), Expect = 0.44 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPGEM----TVEIAGSASQVQ 402 +S+++ VP +IG G I I K SGA I+ + G + ++I+G+ +V Sbjct: 125 VSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVA 184 Query: 401 TAQQLIKNFMAE 366 A+ LI ++E Sbjct: 185 AAKHLILEKVSE 196
>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein| Length = 560 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -2 Query: 560 KMQVPLSYADAVIGSAGANISYIRKHSGATISIQ-EGVPGEMTVEIAGSASQVQTAQQLI 384 +M+VP +IG GANI +RK +GA I + E V E + I+G QV A+ I Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115 Query: 383 KNFMAE 366 + E Sbjct: 116 HQILTE 121 Score = 31.6 bits (70), Expect = 1.7 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Frame = -2 Query: 563 QKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPGEM----TVEIAGSASQVQTA 396 +++ VP +IG G I I K SGA I+ + G + ++I+G+ +V A Sbjct: 127 EQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAA 186 Query: 395 QQLIKNFMAE 366 + LI ++E Sbjct: 187 KHLILEKVSE 196
>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 39.3 bits (90), Expect = 0.008 Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPLSYADAVIGSAGANISYIRKHSGATISI--QEGVPGEMTVEIAGSASQVQTAQ 393 SQ+ VP VIG G+ IS IR+ SGA I I Q GE V I GS + AQ Sbjct: 243 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 302 Query: 392 QLI 384 LI Sbjct: 303 YLI 305
>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 39.3 bits (90), Expect = 0.008 Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPLSYADAVIGSAGANISYIRKHSGATISI--QEGVPGEMTVEIAGSASQVQTAQ 393 SQ+ VP VIG G+ IS IR+ SGA I I Q GE V I GS + AQ Sbjct: 243 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 302 Query: 392 QLI 384 LI Sbjct: 303 YLI 305
>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 35.8 bits (81), Expect = 0.089 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTAQ 393 + ++ +P +IG G I+ IR+ SGA I I G E + I G+ + + AQ Sbjct: 263 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 322 Query: 392 QLI 384 LI Sbjct: 323 YLI 325 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -2 Query: 530 AVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQQLI 384 ++IG G + +R+ SGA I+I EG E V I G + A +I Sbjct: 27 SIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 35.8 bits (81), Expect = 0.089 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTAQ 393 + ++ +P +IG G I+ IR+ SGA I I G E + I G+ + + AQ Sbjct: 263 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 322 Query: 392 QLI 384 LI Sbjct: 323 YLI 325 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -2 Query: 530 AVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQQLI 384 ++IG G + +R+ SGA I+I EG E V I G + A +I Sbjct: 27 SIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Fragment) Length = 474 Score = 34.7 bits (78), Expect = 0.20 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = -2 Query: 560 KMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG----EMTVEIAGSASQVQTAQ 393 K+ VP S A +IG GA + I + SGA + + + G E V ++G Q + A Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 209 Query: 392 QLI 384 +LI Sbjct: 210 ELI 212
>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Ventral neuron-specific protein 1) (Fragment) Length = 493 Score = 34.7 bits (78), Expect = 0.20 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = -2 Query: 560 KMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG----EMTVEIAGSASQVQTAQ 393 K+ VP S A +IG GA + I + SGA + + + G E V ++G Q + A Sbjct: 161 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 220 Query: 392 QLI 384 +LI Sbjct: 221 ELI 223
>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Onconeural ventral antigen 1) (Paraneoplastic Ri antigen) (Ventral neuron-specific protein 1) Length = 510 Score = 34.3 bits (77), Expect = 0.26 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = -2 Query: 560 KMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG----EMTVEIAGSASQVQTAQ 393 K+ VP S A +IG GA + + + SGA + + + G E V ++G Q + A Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 237 Query: 392 QLI 384 +LI Sbjct: 238 ELI 240
>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral| antigen 2) (Astrocytic NOVA1-like RNA-binding protein) Length = 492 Score = 34.3 bits (77), Expect = 0.26 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Frame = -2 Query: 560 KMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG----EMTVEIAGSASQVQTAQ 393 K+ VP S A +IG GA + + + SGA + + + G E V ++G QV A Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAV 193 Query: 392 QLI 384 I Sbjct: 194 SAI 196 Score = 29.6 bits (65), Expect = 6.4 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = -2 Query: 560 KMQVPLSYADAVIGSAGANISYIRKHSGATISIQEG---VPGEMTVEIAGSASQVQTAQQ 390 K+ +P A ++IG G I ++K +GATI + + PG T E A Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG--TTERVCLVQGTAEALN 93 Query: 389 LIKNFMAE 366 + +F+AE Sbjct: 94 AVHSFIAE 101
>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding| protein 3) Length = 572 Score = 34.3 bits (77), Expect = 0.26 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Frame = -2 Query: 551 VPLSYADAVIGSAGANISYIRKHSGATISIQEGVPGE-----MTVEIAGSASQVQTAQQL 387 VP VIG G NI I + SGA + +Q P I G Q++ A+QL Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQL 420 Query: 386 I 384 I Sbjct: 421 I 421 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISI---QEGVPGEMTVEIAGSASQVQT 399 ++++ +VP +IG G IS I+ SG I I G+P E + G+ ++ Sbjct: 78 ITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP-ERPCVLTGTPESIEQ 136 Query: 398 AQQLI 384 A++L+ Sbjct: 137 AKRLL 141
>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375| Length = 606 Score = 33.9 bits (76), Expect = 0.34 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Frame = -2 Query: 560 KMQVPLS--YADAVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTA 396 KMQ+ +S VIG +G+ I+ IRK + A I I +G ++ VE++G S V+ A Sbjct: 396 KMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKKDDL-VEVSGEVSSVRDA 451 Score = 33.5 bits (75), Expect = 0.44 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = -2 Query: 551 VPLSYADAVIGSAGANISYIRKHSGATISIQEGVP--GEMTVEIAGSASQVQTAQQLIKN 378 +P V+G G N+ IR+ SGA I I G+ ++G+ Q++ A+ L++ Sbjct: 542 IPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQA 601 Query: 377 FM 372 F+ Sbjct: 602 FV 603
>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (MAP2 RNA trans-acting protein 1) (MARTA1) Length = 721 Score = 33.1 bits (74), Expect = 0.58 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQE---GVPGEMTVEIAGSASQVQT 399 ++++ +VP +IG G I+ I++ SG + I G+P E +V + G+ VQ Sbjct: 146 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-ERSVSLTGAPESVQK 204 Query: 398 AQQLIKNFMA 369 A+ ++ + ++ Sbjct: 205 AKMMLDDIVS 214
>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 33.1 bits (74), Expect = 0.58 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQE---GVPGEMTVEIAGSASQVQT 399 ++++ +VP +IG G I+ I++ SG + I G+P E +V + G+ VQ Sbjct: 145 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-ERSVSLTGAPESVQK 203 Query: 398 AQQLIKNFMA 369 A+ ++ + ++ Sbjct: 204 AKMMLDDIVS 213
>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2| Length = 769 Score = 32.7 bits (73), Expect = 0.75 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQE---GVPGEMTVEIAGSASQVQT 399 ++++ +VP +IG G I+ I++ SG + I G+P E +V + GS VQ Sbjct: 209 VTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-ERSVSLTGSPEAVQK 267 Query: 398 AQQLIKNFMA 369 A+ ++ + ++ Sbjct: 268 AKLMLDDIVS 277
>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) Length = 651 Score = 32.7 bits (73), Expect = 0.75 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISI---QEGVPGEMTVEIAGSASQVQT 399 ++++ +VP +IG G IS I++ SG I I G+P E + + G+ VQ+ Sbjct: 97 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP-ERSCMLTGTPESVQS 155 Query: 398 AQQLI 384 A++L+ Sbjct: 156 AKRLL 160 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = -2 Query: 551 VPLSYADAVIGSAGANISYIRKHSGATISIQEGV-----PGEMTVEIAGSASQVQTAQQL 387 VP +IG G I I + SGA I +Q P I G+ Q+ A+QL Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438 Query: 386 IK 381 I+ Sbjct: 439 IE 440
>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) (DNA helicase V) (HDH V) Length = 643 Score = 32.7 bits (73), Expect = 0.75 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISI---QEGVPGEMTVEIAGSASQVQT 399 ++++ +VP +IG G IS I++ SG I I G+P E + + G+ VQ+ Sbjct: 100 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP-ERSCMLTGTPESVQS 158 Query: 398 AQQLI 384 A++L+ Sbjct: 159 AKRLL 163 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = -2 Query: 551 VPLSYADAVIGSAGANISYIRKHSGATISIQEGV-----PGEMTVEIAGSASQVQTAQQL 387 VP +IG G I I + SGA I +Q P I G+ Q+ A+QL Sbjct: 382 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 441 Query: 386 IK 381 I+ Sbjct: 442 IE 443
>YBD2_YEAST (P38199) Hypothetical 41.7 kDa protein in RIB1-AAC2 intergenic| region Length = 381 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -2 Query: 569 LSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTA 396 ++ ++ + L A +IG+ G+ IS IR + I I E VPG + + AG+ V A Sbjct: 44 INHRLLLSLKEAAKIIGTKGSTISRIRAANAVKIGISEKVPGCSDRILSCAGNVINVANA 103
>ISPF_BIFLO (Q8G5L2) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC| 4.6.1.12) (MECPS) (MECDP-synthase) Length = 174 Score = 31.6 bits (70), Expect = 1.7 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = +2 Query: 44 QHIREHLCSTDYTTDSSEMLVIVSRAPQIGRPNNKTKFVTNPSVSCPASTRSSVGNVPHS 223 Q + HL S YT S+ + +I +R P+IG + + + +V CP S ++ + Sbjct: 98 QEVVAHLASNGYTPASASVAIIGNR-PKIGTRRAEAEAALSAAVGCPVSVTATTTDHMGF 156 Query: 224 LLHCEG 241 H EG Sbjct: 157 TGHGEG 162
>VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding protein)| (HDL-binding protein) Length = 1268 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPL--SYADAVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQ 393 S + VP+ + +IG GANI IR+ S I + T+ I G + + A+ Sbjct: 581 SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIVITGKRANCEAAR 640 Query: 392 QLI 384 I Sbjct: 641 SRI 643
>MAMC1_MOUSE (P60755) MAM domain-containing protein 1 precursor (MAM| domain-containing glycosylphosphatidylinositol anchor protein 2) Length = 949 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -1 Query: 279 TLVCNSTRGRRSYPSQWRRLWGTLPTELRVLAGHETLGLVTN 154 TLVC +T G + W R +GTLP ++ + G T+ +T+ Sbjct: 261 TLVCVTTGGEPTPSLTWVRSFGTLPEKIVLNGGTLTIPAITS 302
>RNGB_DICDI (Q7M3S9) Ring finger protein B (Protein rngB)| Length = 943 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/63 (23%), Positives = 35/63 (55%) Frame = -2 Query: 557 MQVPLSYADAVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQQLIKN 378 + +P++ +++++GS +IS +SGA+ S G+ G ++ + S+S + L + Sbjct: 332 ISIPITNSNSIVGSPNTSISCGVSNSGASSSSGGGISGHPSILSSSSSSSYLSTSPLSTS 391 Query: 377 FMA 369 +A Sbjct: 392 SLA 394
>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)| (HDL-binding protein) Length = 1268 Score = 29.6 bits (65), Expect = 6.4 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPL--SYADAVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQ 393 S + VP+ + +IG GANI IR+ S I + T+ I G + + A+ Sbjct: 581 SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAAR 640 Query: 392 QLI 384 I Sbjct: 641 SRI 643
>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)| (HDL-binding protein) Length = 1268 Score = 29.6 bits (65), Expect = 6.4 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = -2 Query: 566 SQKMQVPL--SYADAVIGSAGANISYIRKHSGATISIQEGVPGEMTVEIAGSASQVQTAQ 393 S + VP+ + +IG GANI IR+ S I + T+ I G + + A+ Sbjct: 581 SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAAR 640 Query: 392 QLI 384 I Sbjct: 641 SRI 643
>YG3S_YEAST (P53289) Hypothetical 29.3 kDa protein in NSR1-TIF4631 intergenic| region Length = 263 Score = 29.3 bits (64), Expect = 8.3 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -3 Query: 286 MEDPRMQLHQGAQ---VLPLTMEEAMGHITHRTTGTS 185 ++ P+++L GA VLPLT +++M HI+H +S Sbjct: 132 LDTPKLKLTDGASRHTVLPLTPKDSMTHISHSARRSS 168
>MAMC1_RAT (P60756) MAM domain-containing protein 1 precursor (MAM| domain-containing glycosylphosphatidylinositol anchor protein 2) Length = 949 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -1 Query: 279 TLVCNSTRGRRSYPSQWRRLWGTLPTELRVLAGHETLGLVTN 154 TLVC +T G W R +GTLP ++ + G T+ +T+ Sbjct: 261 TLVCVTTGGEPMPSLTWVRSFGTLPEKIVLNGGTLTIPAITS 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,210,901 Number of Sequences: 219361 Number of extensions: 1367572 Number of successful extensions: 4279 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4279 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
