ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24p12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC164562.4| Mus musculus BAC clone RP23-148G12 from chromosom... 44 0.49
2ref|XR_002527.1| PREDICTED: Mus musculus similar to TD and POZ d... 44 0.49
3ref|XR_002175.1| PREDICTED: Mus musculus similar to TD and POZ d... 44 0.49
4gb|AF545858.1| Mus musculus TDPOZ1 (Tdpoz1) and TDPOZ2 (Tdpoz2) ... 44 0.49
5gb|AC132362.3| Mus musculus BAC clone RP23-455B5 from chromosome... 44 0.49
6gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome... 44 0.49
7gb|AC124186.3| Mus musculus BAC clone RP23-232B20 from chromosom... 44 0.49
8emb|AL833782.13| Mouse DNA sequence from clone RP23-83L24 on chr... 44 0.49
9ref|NM_001007222.1| Mus musculus TD and POZ domain containing 2 ... 44 0.49
10ref|XM_479385.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
11gb|AC073437.50| Mus musculus strain 129/Sv chromosome 2 clone ct... 42 1.9
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
13dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
14gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28... 42 1.9
15dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
16dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
17dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
18dbj|AK108036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
19dbj|AK073258.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
20emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chro... 42 1.9
21gb|AC164095.4| Mus musculus BAC clone RP23-355A22 from chromosom... 40 7.6
22gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 7.6
23gb|BT016732.1| Zea mays clone Contig565 mRNA sequence 40 7.6
24gb|AC131330.25| Mus musculus chromosome 14, clone RP23-477H13, c... 40 7.6
25gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 7.6
26gb|BC076185.1| Danio rerio zgc:92705, mRNA (cDNA clone MGC:92705... 40 7.6
27gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosom... 40 7.6
28ref|XM_380887.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 7.6
29gb|AC175689.5| Otolemur garnetti, clone XX-8157A7, complete sequ... 40 7.6
30gb|AC102264.26| Mus musculus chromosome 7, clone RP24-230F10, co... 40 7.6
31ref|NM_001002399.1| Danio rerio zgc:92705 (zgc:92705), mRNA 40 7.6
32gb|AC009652.14| Homo sapiens chromosome 11, clone RP11-428C19, c... 40 7.6
33gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complet... 40 7.6
34dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
35ref|XM_345239.2| PREDICTED: Rattus norvegicus TD and POZ domain ... 40 7.6
36ref|XM_227358.2| PREDICTED: Rattus norvegicus similar to TDPOZ2 ... 40 7.6
37gb|AC154186.1| Mus musculus BAC clone RP24-435B3 from chromosome... 40 7.6
38dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.6
39dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
40gb|AC102279.18| Mus musculus chromosome 7, clone RP24-302P2, com... 40 7.6
41gb|AY109419.1| Zea mays CL26634_1 mRNA sequence 40 7.6
42emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on ch... 40 7.6
43gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, compl... 40 7.6 
>gb|AC164562.4| Mus musculus BAC clone RP23-148G12 from chromosome 3, complete sequence
          Length = 202591

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 396   tcaagtccatacttgtcagcagctgc 421
             ||||| ||||||||||||||||||||
Sbjct: 43831 tcaaggccatacttgtcagcagctgc 43856
to top
>ref|XR_002527.1| PREDICTED: Mus musculus similar to TD and POZ domain containing 2
           (LOC669471), mRNA
          Length = 1102

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 396 tcaagtccatacttgtcagcagctgc 421
           ||||| ||||||||||||||||||||
Sbjct: 821 tcaaggccatacttgtcagcagctgc 796
to top
>ref|XR_002175.1| PREDICTED: Mus musculus similar to TD and POZ domain containing 2
           (LOC668385), mRNA
          Length = 1007

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 396 tcaagtccatacttgtcagcagctgc 421
           ||||| ||||||||||||||||||||
Sbjct: 728 tcaaggccatacttgtcagcagctgc 703
to top
>gb|AF545858.1| Mus musculus TDPOZ1 (Tdpoz1) and TDPOZ2 (Tdpoz2) genes, complete cds
          Length = 124933

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 396   tcaagtccatacttgtcagcagctgc 421
             ||||| ||||||||||||||||||||
Sbjct: 55792 tcaaggccatacttgtcagcagctgc 55767
to top
>gb|AC132362.3| Mus musculus BAC clone RP23-455B5 from chromosome 3, complete sequence
          Length = 164762

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 396   tcaagtccatacttgtcagcagctgc 421
             ||||| ||||||||||||||||||||
Sbjct: 89110 tcaaggccatacttgtcagcagctgc 89135
to top
>gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome 3, complete sequence
          Length = 175133

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 396    tcaagtccatacttgtcagcagctgc 421
              ||||| ||||||||||||||||||||
Sbjct: 145869 tcaaggccatacttgtcagcagctgc 145844
to top
>gb|AC124186.3| Mus musculus BAC clone RP23-232B20 from chromosome 3, complete sequence
          Length = 195957

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 396    tcaagtccatacttgtcagcagctgc 421
              ||||| ||||||||||||||||||||
Sbjct: 161678 tcaaggccatacttgtcagcagctgc 161703
to top
>emb|AL833782.13| Mouse DNA sequence from clone RP23-83L24 on chromosome X, complete
              sequence
          Length = 198249

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 193    ccataggacagcttgcctccag 214
              ||||||||||||||||||||||
Sbjct: 182781 ccataggacagcttgcctccag 182760
to top
>ref|NM_001007222.1| Mus musculus TD and POZ domain containing 2 (Tdpoz2), mRNA
          Length = 1095

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 396 tcaagtccatacttgtcagcagctgc 421
           ||||| ||||||||||||||||||||
Sbjct: 818 tcaaggccatacttgtcagcagctgc 793
to top
>ref|XM_479385.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 414  gcagctgcaagtaaatgctgggcca 438
            |||||||||||||||||||| ||||
Sbjct: 1230 gcagctgcaagtaaatgctgagcca 1206
to top
>gb|AC073437.50| Mus musculus strain 129/Sv chromosome 2 clone ct7-531j6, complete
             sequence
          Length = 176056

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    agatgcatggcaacataaaca 95
             |||||||||||||||||||||
Sbjct: 89756 agatgcatggcaacataaaca 89776
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 414      gcagctgcaagtaaatgctgggcca 438
                |||||||||||||||||||| ||||
Sbjct: 27495084 gcagctgcaagtaaatgctgagcca 27495060
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 198      ggacagcttgcctccagatgcttatatccgtccgttgccaacacagcatcaag 250
                |||||||| ||||||||||| ||  | || || || |||||||||||||||||
Sbjct: 27300784 ggacagctcgcctccagatgtttgaacccatcagtggccaacacagcatcaag 27300836
to top
>gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete
              sequence
          Length = 154716

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 495    aaataaagtaacggcttaaat 515
              |||||||||||||||||||||
Sbjct: 104169 aaataaagtaacggcttaaat 104189
to top
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0018C07
          Length = 141707

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 414   gcagctgcaagtaaatgctgggcca 438
             |||||||||||||||||||| ||||
Sbjct: 59055 gcagctgcaagtaaatgctgagcca 59031
to top
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0637D03
          Length = 180159

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                   
Query: 198    ggacagcttgcctccagatgcttatatccgtccgttgccaacacagcatcaag 250
              |||||||| ||||||||||| ||  | || || || |||||||||||||||||
Sbjct: 157800 ggacagctcgcctccagatgtttgaacccatcagtggccaacacagcatcaag 157852
to top
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 198   ggacagcttgcctccagatgcttatatccgtccgttgccaacacagcatcaag 250
             |||||||| ||||||||||| ||  | || || || |||||||||||||||||
Sbjct: 43611 ggacagctcgcctccagatgtttgaacccatcagtggccaacacagcatcaag 43663
to top
>dbj|AK108036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C07, full
            insert sequence
          Length = 1482

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 198  ggacagcttgcctccagatgcttatatccgtccgttgccaacacagcatcaag 250
            |||||||| ||||||||||| ||  | || || || |||||||||||||||||
Sbjct: 1120 ggacagctcgcctccagatgtttgaacccatcagtggccaacacagcatcaag 1068
to top
>dbj|AK073258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L05, full
            insert sequence
          Length = 1768

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 414  gcagctgcaagtaaatgctgggcca 438
            |||||||||||||||||||| ||||
Sbjct: 1230 gcagctgcaagtaaatgctgagcca 1206
to top
>emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chromosome 2, complete
              sequence
          Length = 196421

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     agatgcatggcaacataaaca 95
              |||||||||||||||||||||
Sbjct: 162424 agatgcatggcaacataaaca 162444
to top
>gb|AC164095.4| Mus musculus BAC clone RP23-355A22 from chromosome 7, complete sequence
          Length = 184356

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   aggacagcttgcctccagat 216
             ||||||||||||||||||||
Sbjct: 77799 aggacagcttgcctccagat 77818
to top
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    gtgtcgacactgatgccatc 361
              ||||||||||||||||||||
Sbjct: 660383 gtgtcgacactgatgccatc 660402
to top
>gb|BT016732.1| Zea mays clone Contig565 mRNA sequence
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 gatctccttgagcctatcaa 399
           ||||||||||||||||||||
Sbjct: 365 gatctccttgagcctatcaa 384
to top
>gb|AC131330.25| Mus musculus chromosome 14, clone RP23-477H13, complete sequence
          Length = 166214

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ccatacttgtcagcagctgc 421
             ||||||||||||||||||||
Sbjct: 28219 ccatacttgtcagcagctgc 28238
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 528     atgtccttgatctcgacgcg 547
               ||||||||||||||||||||
Sbjct: 2327277 atgtccttgatctcgacgcg 2327258
to top
>gb|BC076185.1| Danio rerio zgc:92705, mRNA (cDNA clone MGC:92705 IMAGE:7075156),
            complete cds
          Length = 1727

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  gcatcaatgtccttgatctc 541
            ||||||||||||||||||||
Sbjct: 1088 gcatcaatgtccttgatctc 1069
to top
>gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosome 7, complete sequence
          Length = 192433

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   aggacagcttgcctccagat 216
             ||||||||||||||||||||
Sbjct: 57086 aggacagcttgcctccagat 57105
to top
>ref|XM_380887.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00711.1)
           partial mRNA
          Length = 5931

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 acagcatcaagaattgcagg 259
           ||||||||||||||||||||
Sbjct: 455 acagcatcaagaattgcagg 436
to top
>gb|AC175689.5| Otolemur garnetti, clone XX-8157A7, complete sequence
          Length = 40468

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 461   catttcaaattccatcacagagtc 484
             |||||||||| |||||||||||||
Sbjct: 28391 catttcaaatcccatcacagagtc 28414
to top
>gb|AC102264.26| Mus musculus chromosome 7, clone RP24-230F10, complete sequence
          Length = 175968

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    aggacagcttgcctccagat 216
              ||||||||||||||||||||
Sbjct: 165575 aggacagcttgcctccagat 165556
to top
>ref|NM_001002399.1| Danio rerio zgc:92705 (zgc:92705), mRNA
          Length = 1727

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  gcatcaatgtccttgatctc 541
            ||||||||||||||||||||
Sbjct: 1088 gcatcaatgtccttgatctc 1069
to top
>gb|AC009652.14| Homo sapiens chromosome 11, clone RP11-428C19, complete sequence
          Length = 200823

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 452   ctcatgctgcatttcaaatt 471
             ||||||||||||||||||||
Sbjct: 64311 ctcatgctgcatttcaaatt 64330
to top
>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence
          Length = 222605

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   acatcgtgacctcctcatgc 458
             ||||||||||||||||||||
Sbjct: 77187 acatcgtgacctcctcatgc 77168
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 70       accacagatgcatggcaaca 89
                ||||||||||||||||||||
Sbjct: 26090529 accacagatgcatggcaaca 26090510
to top
>ref|XM_345239.2| PREDICTED: Rattus norvegicus TD and POZ domain containing 1
            (predicted) (Tdpoz1_predicted), mRNA
          Length = 1368

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  ccatacttgtcagcagctgc 421
            ||||||||||||||||||||
Sbjct: 1085 ccatacttgtcagcagctgc 1066
to top
>ref|XM_227358.2| PREDICTED: Rattus norvegicus similar to TDPOZ2 (LOC295201), mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  ccatacttgtcagcagctgc 421
            ||||||||||||||||||||
Sbjct: 1193 ccatacttgtcagcagctgc 1174
to top
>gb|AC154186.1| Mus musculus BAC clone RP24-435B3 from chromosome 14, complete sequence
          Length = 167900

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ccatacttgtcagcagctgc 421
             ||||||||||||||||||||
Sbjct: 54867 ccatacttgtcagcagctgc 54848
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 528     atgtccttgatctcgacgcg 547
               ||||||||||||||||||||
Sbjct: 2425411 atgtccttgatctcgacgcg 2425392
to top
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    accacagatgcatggcaaca 89
             ||||||||||||||||||||
Sbjct: 34460 accacagatgcatggcaaca 34441
to top
>gb|AC102279.18| Mus musculus chromosome 7, clone RP24-302P2, complete sequence
          Length = 170100

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    aggacagcttgcctccagat 216
              ||||||||||||||||||||
Sbjct: 135394 aggacagcttgcctccagat 135413
to top
>gb|AY109419.1| Zea mays CL26634_1 mRNA sequence
          Length = 1373

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 380  gatctccttgagcctatcaa 399
            ||||||||||||||||||||
Sbjct: 1044 gatctccttgagcctatcaa 1025
to top
>emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on chromosome 4, complete
             sequence
          Length = 180239

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   gacactgatgccatcagata 366
             ||||||||||||||||||||
Sbjct: 83408 gacactgatgccatcagata 83427
to top
>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence
          Length = 187685

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   acacatttcactttgagctg 298
             ||||||||||||||||||||
Sbjct: 75309 acacatttcactttgagctg 75328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,597,697
Number of Sequences: 3902068
Number of extensions: 4597697
Number of successful extensions: 86780
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 86582
Number of HSP's gapped (non-prelim): 205
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top