ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25e18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ROBO2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor 32 0.79
2ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor 30 3.9
3VP30_MABVP (P41326) Minor nucleoprotein VP30 (VP5) 30 5.1
4SLU7_CRYNE (Q5KII3) Pre-mRNA-splicing factor SLU7 30 5.1
5REC8L_HUMAN (O95072) Meiotic recombination protein REC8-like 1 (... 29 6.7

>ROBO2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor|
          Length = 1378

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 166  YSDADQNKSSNIPRNGSKEKANNEQKPTHAKATAW 270
            YS  DQNK +N  + G K+K  N  KP     + W
Sbjct: 1035 YSLPDQNKGNNGGKGGKKKKNKNSSKPQKNNGSTW 1069



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>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor|
          Length = 1470

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 166  YSDADQNKSSNIPRNGSKEKANNEQKPTHAKATAW 270
            YS  DQNK +N  + G K+K  N  K      + W
Sbjct: 1039 YSLPDQNKGNNGGKGGKKKKTKNSSKAQKNNGSTW 1073



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>VP30_MABVP (P41326) Minor nucleoprotein VP30 (VP5)|
          Length = 281

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 161 SCTRTQIRTKAPTYHGMAAKKKPIMNRNQPMPRPQHGRRRILTGLPST 304
           S TR+   + +PT H   A+  P  N ++P P P+   R +  GLP T
Sbjct: 42  SSTRSSAES-SPTNHIPRARPPPTFNLSKPPPPPKDMCRNMKIGLPCT 88



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>SLU7_CRYNE (Q5KII3) Pre-mRNA-splicing factor SLU7|
          Length = 574

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 265 LWPWHGLVSVHYWLFLCCHSVVCWSFCS 182
           +W  +  +S   W F CCHSV+  S+C+
Sbjct: 410 IWGSYYDLSTSQWGFACCHSVLPGSYCT 437



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>REC8L_HUMAN (O95072) Meiotic recombination protein REC8-like 1 (Cohesin Rec8p)|
          Length = 547

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 514 PVRHLRGPVRLRRVPAAGGRVPPACSAAW 428
           P R +RGP  L R P   G +PP     W
Sbjct: 338 PERTIRGPAELFRTPTLSGWLPPELLGLW 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,448,762
Number of Sequences: 219361
Number of extensions: 849700
Number of successful extensions: 2753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2752
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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