ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25e17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475314.1| Oryza sativa (japonica cultivar-group), predic... 86 1e-13
2ref|NM_190752.1| Oryza sativa (japonica cultivar-group), predic... 86 1e-13
3dbj|AK119536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
4gb|AF218845.1|AF218845 Porteresia coarctata fructose-1,6-bisphos... 86 1e-13
5dbj|AK070516.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
6dbj|AB007193.1| Oryza sativa mRNA for fructose-1,6-bisphosphatas... 86 1e-13
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
8dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
9gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
11emb|X89006.1|SHRNAF16B Saccharum hybrid cultivar H65-7052 mRNA f... 62 2e-06
12emb|AJ243392.1|PSA243392 Pisum sativum mRNA for cytosolic fructo... 50 0.007
13emb|X76946.1|STCYF1 S.tuberosum cy-F1 mRNA for cytosolic fructos... 48 0.026
14ref|NM_103492.3| Arabidopsis thaliana fructose-bisphosphatase/ p... 44 0.41
15gb|BT000470.1| Arabidopsis thaliana fructose 1,6-bisphosphatase,... 44 0.41
16gb|BT008732.1| Arabidopsis thaliana At1g43670 gene, complete cds 44 0.41
17gb|M80597.1|BEUF16BPP Beta vulgaris cytosolic fructose-1,6-bisph... 44 0.41
18gb|AF378183.1|AF378183 Oryza sativa cultivar Milyang23 cytosolic... 44 0.41
19gb|AF317553.1|AF317553 Beta vulgaris cytosolic fructose-1,6-bisp... 44 0.41
20gb|AC009526.4|AC009526 Arabidopsis thaliana chromosome I BAC F2J... 44 0.41
21emb|X61690.1|SOFBPY S.olearacea Scytfbpy gene for fructose-1,6-b... 42 1.6
22gb|AY093594.1| Pisum sativum cytoplasmic fructose-1,6-bisphospha... 42 1.6
23gb|BT012957.1| Lycopersicon esculentum clone 114145F, mRNA sequence 40 6.4
24gb|BT013377.1| Lycopersicon esculentum clone 135407F, mRNA sequence 40 6.4
25gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, comp... 40 6.4
26gb|AF130251.1|AF130251 Musa acuminata cytosolic fructose-1,6-bis... 40 6.4 
>ref|XM_475314.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1032

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 393 acaatttcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcagg 452
           |||| |||||||||||| |||||||| ||||||| ||| ||||| ||||||||||||| |
Sbjct: 932 acaagttcaagggcccgttgtttgcctgtgaaagcttgtcctccagcttgctccatcaag 873

                                  
Query: 453 aatgacatggggaaaacctcgta 475
           |||||||| ||||| || |||||
Sbjct: 872 aatgacattgggaacacttcgta 850
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>ref|NM_190752.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1110

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                       
Query: 399 tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
           ||||| ||||| | |||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 980 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 921

                      
Query: 459 atggggaaaac 469
           |||||||||||
Sbjct: 920 atggggaaaac 910
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>dbj|AK119536.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B07, full
            insert sequence
          Length = 1315

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 399  tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
            ||||| ||||| | |||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 1023 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 964

                       
Query: 459  atggggaaaac 469
            |||||||||||
Sbjct: 963  atggggaaaac 953
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>gb|AF218845.1|AF218845 Porteresia coarctata fructose-1,6-bisphosphatase mRNA, complete cds
          Length = 1035

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                       
Query: 399 tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
           ||||| ||||| | |||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 920 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 861

                      
Query: 459 atggggaaaac 469
           |||||||||||
Sbjct: 860 atggggaaaac 850
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>dbj|AK070516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057C24, full
            insert sequence
          Length = 1376

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 399  tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
            ||||| ||||| | |||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 1031 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 972

                       
Query: 459  atggggaaaac 469
            |||||||||||
Sbjct: 971  atggggaaaac 961
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>dbj|AB007193.1| Oryza sativa mRNA for fructose-1,6-bisphosphatase (cytosolic
            isoform), complete cds
          Length = 1544

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 399  tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
            ||||| ||||| | |||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 1000 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 941

                       
Query: 459  atggggaaaac 469
            |||||||||||
Sbjct: 940  atggggaaaac 930
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                         
Query: 413      tttgccggtgaaagattggcctccggcttgctccatcaggaatgacatggggaaaac 469
                |||||| |||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct: 37515196 tttgcctgtgaaagactggcctccagcctgctccatcaggaatgacatggggaaaac 37515140
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>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0505D12
          Length = 146951

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                       
Query: 413    tttgccggtgaaagattggcctccggcttgctccatcaggaatgacatggggaaaac 469
              |||||| |||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct: 109733 tttgcctgtgaaagactggcctccagcctgctccatcaggaatgacatggggaaaac 109677
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>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0042J17, complete sequence
          Length = 124139

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                         
Query: 406   cccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgacatgggga 465
             |||| |||||||| ||||||| ||| ||||| ||||||||||||| ||||||||| ||||
Sbjct: 67584 cccgttgtttgcctgtgaaagcttgtcctccagcttgctccatcaagaatgacattggga 67643

                       
Query: 466   aaacctcgta 475
             | || |||||
Sbjct: 67644 acacttcgta 67653
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                            
Query: 406      cccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgacatgggga 465
                |||| |||||||| ||||||| ||| ||||| ||||||||||||| ||||||||| ||||
Sbjct: 21350262 cccgttgtttgcctgtgaaagcttgtcctccagcttgctccatcaagaatgacattggga 21350321

                          
Query: 466      aaacctcgta 475
                | || |||||
Sbjct: 21350322 acacttcgta 21350331
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>emb|X89006.1|SHRNAF16B Saccharum hybrid cultivar H65-7052 mRNA for cytosolic
           fructose-1,6-bisphosphatase
          Length = 1318

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 399 tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
           ||||| ||||| | |||||| ||||| || || ||||| || |||||||| |||||||||
Sbjct: 990 tcaagagcccgttctttgcctgtgaaggactgacctccagcctgctccattaggaatgac 931

                      
Query: 459 atggggaaaac 469
           |||||||||||
Sbjct: 930 atggggaaaac 920



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 333  tcctccacatnatcgtagctcccgaggaatatcgg 367
            ||||||||||  |||||||| ||||||||||||||
Sbjct: 1056 tcctccacatcgtcgtagctgccgaggaatatcgg 1022
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>emb|AJ243392.1|PSA243392 Pisum sativum mRNA for cytosolic fructose-1,6-bisphosphatase
          Length = 990

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 414 ttgccggtgaaagattggcctccggcttgctccatcaggaatgacatggggaa 466
           |||||||||||||| || |||||||| || ||||||| ||| ||||| |||||
Sbjct: 869 ttgccggtgaaagactgtcctccggcctgttccatcaagaaggacattgggaa 817
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>emb|X76946.1|STCYF1 S.tuberosum cy-F1 mRNA for cytosolic fructose-1,6-biphosphatase
          Length = 1487

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 428  ttggcctccggcttgctccatcaggaatgacatggg 463
            ||||||||| ||||| |||||||| |||||||||||
Sbjct: 1089 ttggcctcctgcttgttccatcagaaatgacatggg 1054
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>ref|NM_103492.3| Arabidopsis thaliana fructose-bisphosphatase/ phosphoric ester
           hydrolase AT1G43670 mRNA, complete cds
          Length = 1253

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 432 cctccggcttgctccatcaggaatgacatggggaaaac 469
           |||||||||||||||||||  || ||||| ||||||||
Sbjct: 964 cctccggcttgctccatcaaaaacgacatcgggaaaac 927
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>gb|BT000470.1| Arabidopsis thaliana fructose 1,6-bisphosphatase, putative
           (At1g43670) mRNA, complete cds
          Length = 1200

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 432 cctccggcttgctccatcaggaatgacatggggaaaac 469
           |||||||||||||||||||  || ||||| ||||||||
Sbjct: 934 cctccggcttgctccatcaaaaacgacatcgggaaaac 897
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>gb|BT008732.1| Arabidopsis thaliana At1g43670 gene, complete cds
          Length = 1026

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 432 cctccggcttgctccatcaggaatgacatggggaaaac 469
           |||||||||||||||||||  || ||||| ||||||||
Sbjct: 887 cctccggcttgctccatcaaaaacgacatcgggaaaac 850
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>gb|M80597.1|BEUF16BPP Beta vulgaris cytosolic fructose-1,6-bisphosphatase mRNA, complete
           cds
          Length = 1278

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 399 tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
           ||||| ||||| |||| ||| || |||| ||| || || ||||||||||| | |||||||
Sbjct: 961 tcaagtgcccgttgttcgccagtaaaagcttgtccacctgcttgctccattaagaatgac 902

                         
Query: 459 atggggaaaacctc 472
           ||||| || |||||
Sbjct: 901 atgggaaagacctc 888
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>gb|AF378183.1|AF378183 Oryza sativa cultivar Milyang23 cytosolic fructose-1 mRNA, partial
           cds
          Length = 504

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 444 tccatcaggaatgacatggggaaaac 469
           ||||| ||||||||||||||||||||
Sbjct: 500 tccattaggaatgacatggggaaaac 475
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>gb|AF317553.1|AF317553 Beta vulgaris cytosolic fructose-1,6-bisphosphatase mRNA, complete
           cds
          Length = 1279

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 399 tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
           ||||| ||||| |||| ||| || |||| ||| || || ||||||||||| | |||||||
Sbjct: 962 tcaagtgcccgttgttcgccagtaaaagcttgtccacctgcttgctccattaagaatgac 903

                         
Query: 459 atggggaaaacctc 472
           ||||| || |||||
Sbjct: 902 atgggaaagacctc 889
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>gb|AC009526.4|AC009526 Arabidopsis thaliana chromosome I BAC F2J6 genomic sequence, complete
             sequence
          Length = 108061

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 432   cctccggcttgctccatcaggaatgacatggggaaaac 469
             |||||||||||||||||||  || ||||| ||||||||
Sbjct: 28534 cctccggcttgctccatcaaaaacgacatcgggaaaac 28497
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>emb|X61690.1|SOFBPY S.olearacea Scytfbpy gene for fructose-1,6-bisphosphatase
          Length = 1585

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 399  tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
            ||||| ||||| ||||||||||| |||| ||| || || ||||| ||||| | ||| |||
Sbjct: 1189 tcaagtgcccgttgtttgccggtaaaagcttgtccgccagcttgttccattaagaaggac 1130

                             
Query: 459  atggggaaaacctcgta 475
            || || || ||||||||
Sbjct: 1129 attggaaagacctcgta 1113
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>gb|AY093594.1| Pisum sativum cytoplasmic fructose-1,6-bisphosphatase mRNA,
           complete cds
          Length = 1062

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                       
Query: 399 tcaagggcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgac 458
           ||||| ||||| ||||||||||| |||| ||| || || ||||| ||||| | ||| |||
Sbjct: 920 tcaagtgcccgttgtttgccggtaaaagcttgtccgccagcttgttccattaagaaggac 861

                            
Query: 459 atggggaaaacctcgta 475
           || || || ||||||||
Sbjct: 860 attggaaagacctcgta 844
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>gb|BT012957.1| Lycopersicon esculentum clone 114145F, mRNA sequence
          Length = 1463

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 432 cctccggcttgctccatcaggaatgacatggg 463
           ||||| ||||| |||||||| |||||||||||
Sbjct: 905 cctcctgcttgttccatcagaaatgacatggg 874
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>gb|BT013377.1| Lycopersicon esculentum clone 135407F, mRNA sequence
          Length = 641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 330 atctcctccacatnatcgtagctcccgaggaatat 364
           ||||||||||||| |||||| || || ||||||||
Sbjct: 399 atctcctccacatcatcgtaactaccaaggaatat 365



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 432 cctccggcttgctccatcaggaatgacatggg 463
           ||||| ||||| |||||||| |||||||||||
Sbjct: 297 cctcctgcttgttccatcagaaatgacatggg 266
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>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence
          Length = 170999

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tgaacataacttttcctttt 255
             ||||||||||||||||||||
Sbjct: 36201 tgaacataacttttcctttt 36182
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>gb|AF130251.1|AF130251 Musa acuminata cytosolic fructose-1,6-bisphosphatase (FBPban1)
           mRNA, complete cds
          Length = 1237

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 405 gcccgctgtttgccggtgaaagattggcctccggcttgctccatcaggaatgacat 460
           ||||| || ||||| || |||| ||| || || ||||| |||||||||||||||||
Sbjct: 973 gcccgttgcttgccagtaaaagcttgaccccctgcttgttccatcaggaatgacat 918


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,020,628
Number of Sequences: 3902068
Number of extensions: 2020628
Number of successful extensions: 30720
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30661
Number of HSP's gapped (non-prelim): 59
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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