ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25e14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
2dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
3gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 44 0.36
4ref|NM_210165.1| Eremothecium gossypii AEL050Cp (AEL050C), mRNA 44 0.36
5gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.4
6ref|NM_194800.1| Oryza sativa (japonica cultivar-group) putative... 40 5.7
7emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 5.7
8ref|XM_806065.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.7
9ref|XM_814651.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.7
10gb|AY271930.1|AY271928S3 Pauropsalta johanae elongation factor-1... 40 5.7
11gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, c... 40 5.7
12gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, c... 40 5.7
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
14dbj|AK100609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  186 bits (94), Expect = 4e-44
 Identities = 179/208 (86%)
 Strand = Plus / Minus

                                                                           
Query: 210     gagcgtctcgagcgcgatgagctcgttggccctgtccgtggggtggtactcatcccanaa 269
               |||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||| ||
Sbjct: 6748447 gagcgtctcgagcgcgatgagctcgttggcgcggtcggtggggtggtactcgtcccagaa 6748388

                                                                           
Query: 270     cacgtacttgctgcggtccttgcanagcgtggaaagcggggtgcaggtgagcgtcggcct 329
               |||||||| ||| ||||||||||| |||||||| ||||| ||||| || |||||||||| 
Sbjct: 6748387 cacgtactggctccggtccttgcacagcgtggacagcggcgtgcacgtcagcgtcggccg 6748328

                                                                           
Query: 330     caccttgccgagcgtgcagcatggcgcgtgggagttgttgaagccgtgcatgtagggccg 389
               ||||   || |||| |||||| |||||  | ||||||||||| ||||||     ||| ||
Sbjct: 6748327 cacccgccccagcgagcagcacggcgcccgcgagttgttgaacccgtgcgccgcggggcg 6748268

                                           
Query: 390     gtcgatgatgtcctggaagtagtcgtac 417
               ||||||||||||||||||||||||||||
Sbjct: 6748267 gtcgatgatgtcctggaagtagtcgtac 6748240



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>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0525F01
          Length = 151668

 Score =  186 bits (94), Expect = 4e-44
 Identities = 179/208 (86%)
 Strand = Plus / Minus

                                                                         
Query: 210   gagcgtctcgagcgcgatgagctcgttggccctgtccgtggggtggtactcatcccanaa 269
             |||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||| ||
Sbjct: 78126 gagcgtctcgagcgcgatgagctcgttggcgcggtcggtggggtggtactcgtcccagaa 78067

                                                                         
Query: 270   cacgtacttgctgcggtccttgcanagcgtggaaagcggggtgcaggtgagcgtcggcct 329
             |||||||| ||| ||||||||||| |||||||| ||||| ||||| || |||||||||| 
Sbjct: 78066 cacgtactggctccggtccttgcacagcgtggacagcggcgtgcacgtcagcgtcggccg 78007

                                                                         
Query: 330   caccttgccgagcgtgcagcatggcgcgtgggagttgttgaagccgtgcatgtagggccg 389
             ||||   || |||| |||||| |||||  | ||||||||||| ||||||     ||| ||
Sbjct: 78006 cacccgccccagcgagcagcacggcgcccgcgagttgttgaacccgtgcgccgcggggcg 77947

                                         
Query: 390   gtcgatgatgtcctggaagtagtcgtac 417
             ||||||||||||||||||||||||||||
Sbjct: 77946 gtcgatgatgtcctggaagtagtcgtac 77919



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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 356    cgtgggagttgttgaagccgtgcatg 381
              |||| |||||||||||||||||||||
Sbjct: 541770 cgtgagagttgttgaagccgtgcatg 541795



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>ref|NM_210165.1| Eremothecium gossypii AEL050Cp (AEL050C), mRNA
          Length = 2154

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 356  cgtgggagttgttgaagccgtgcatg 381
            |||| |||||||||||||||||||||
Sbjct: 1501 cgtgagagttgttgaagccgtgcatg 1476



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 298     gtggaaagcggggtgcaggtg 318
               |||||||||||||||||||||
Sbjct: 3404863 gtggaaagcggggtgcaggtg 3404843



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>ref|NM_194800.1| Oryza sativa (japonica cultivar-group) putative anter-specific
           proline-rich protein (OSJNBa0029P06.18), mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 226 atgagctcgttggccctgtccgtggggtggta 257
           ||||||| || |||||| ||||||||||||||
Sbjct: 932 atgagcttgtaggccctctccgtggggtggta 901



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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 386     gccggtcgatgatgtcctgg 405
               ||||||||||||||||||||
Sbjct: 2352200 gccggtcgatgatgtcctgg 2352181



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>ref|XM_806065.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506681.20) partial mRNA
          Length = 2625

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 gtggaaagcggggtgcaggt 317
           ||||||||||||||||||||
Sbjct: 892 gtggaaagcggggtgcaggt 911



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>ref|XM_814651.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506825.20) partial mRNA
          Length = 2637

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 gtggaaagcggggtgcaggt 317
           ||||||||||||||||||||
Sbjct: 904 gtggaaagcggggtgcaggt 923



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>gb|AY271930.1|AY271928S3 Pauropsalta johanae elongation factor-1 alpha gene, partial
           sequence
          Length = 489

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 gtgctgttggcaacgactgt 194
           ||||||||||||||||||||
Sbjct: 58  gtgctgttggcaacgactgt 77



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>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence
          Length = 122319

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 226   atgagctcgttggccctgtccgtggggtggta 257
             ||||||| || |||||| ||||||||||||||
Sbjct: 40814 atgagcttgtaggccctctccgtggggtggta 40783



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>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence
          Length = 151533

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 226    atgagctcgttggccctgtccgtggggtggta 257
              ||||||| || |||||| ||||||||||||||
Sbjct: 132347 atgagcttgtaggccctctccgtggggtggta 132316



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 226     atgagctcgttggccctgtccgtggggtggta 257
               ||||||| || |||||| ||||||||||||||
Sbjct: 2475615 atgagcttgtaggccctctccgtggggtggta 2475584



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>dbj|AK100609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107L07, full
            insert sequence
          Length = 1299

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 226  atgagctcgttggccctgtccgtggggtggta 257
            ||||||| || |||||| ||||||||||||||
Sbjct: 1041 atgagcttgtaggccctctccgtggggtggta 1010



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 226     atgagctcgttggccctgtccgtggggtggta 257
               ||||||| || |||||| ||||||||||||||
Sbjct: 2475566 atgagcttgtaggccctctccgtggggtggta 2475535


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,158,769
Number of Sequences: 3902068
Number of extensions: 2158769
Number of successful extensions: 37055
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36937
Number of HSP's gapped (non-prelim): 116
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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