Clone Name | rbasd25e14 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 186 bits (94), Expect = 4e-44 Identities = 179/208 (86%) Strand = Plus / Minus Query: 210 gagcgtctcgagcgcgatgagctcgttggccctgtccgtggggtggtactcatcccanaa 269 |||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||| || Sbjct: 6748447 gagcgtctcgagcgcgatgagctcgttggcgcggtcggtggggtggtactcgtcccagaa 6748388 Query: 270 cacgtacttgctgcggtccttgcanagcgtggaaagcggggtgcaggtgagcgtcggcct 329 |||||||| ||| ||||||||||| |||||||| ||||| ||||| || |||||||||| Sbjct: 6748387 cacgtactggctccggtccttgcacagcgtggacagcggcgtgcacgtcagcgtcggccg 6748328 Query: 330 caccttgccgagcgtgcagcatggcgcgtgggagttgttgaagccgtgcatgtagggccg 389 |||| || |||| |||||| ||||| | ||||||||||| |||||| ||| || Sbjct: 6748327 cacccgccccagcgagcagcacggcgcccgcgagttgttgaacccgtgcgccgcggggcg 6748268 Query: 390 gtcgatgatgtcctggaagtagtcgtac 417 |||||||||||||||||||||||||||| Sbjct: 6748267 gtcgatgatgtcctggaagtagtcgtac 6748240
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 186 bits (94), Expect = 4e-44 Identities = 179/208 (86%) Strand = Plus / Minus Query: 210 gagcgtctcgagcgcgatgagctcgttggccctgtccgtggggtggtactcatcccanaa 269 |||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||| || Sbjct: 78126 gagcgtctcgagcgcgatgagctcgttggcgcggtcggtggggtggtactcgtcccagaa 78067 Query: 270 cacgtacttgctgcggtccttgcanagcgtggaaagcggggtgcaggtgagcgtcggcct 329 |||||||| ||| ||||||||||| |||||||| ||||| ||||| || |||||||||| Sbjct: 78066 cacgtactggctccggtccttgcacagcgtggacagcggcgtgcacgtcagcgtcggccg 78007 Query: 330 caccttgccgagcgtgcagcatggcgcgtgggagttgttgaagccgtgcatgtagggccg 389 |||| || |||| |||||| ||||| | ||||||||||| |||||| ||| || Sbjct: 78006 cacccgccccagcgagcagcacggcgcccgcgagttgttgaacccgtgcgccgcggggcg 77947 Query: 390 gtcgatgatgtcctggaagtagtcgtac 417 |||||||||||||||||||||||||||| Sbjct: 77946 gtcgatgatgtcctggaagtagtcgtac 77919
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 356 cgtgggagttgttgaagccgtgcatg 381 |||| ||||||||||||||||||||| Sbjct: 541770 cgtgagagttgttgaagccgtgcatg 541795
>ref|NM_210165.1| Eremothecium gossypii AEL050Cp (AEL050C), mRNA Length = 2154 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 356 cgtgggagttgttgaagccgtgcatg 381 |||| ||||||||||||||||||||| Sbjct: 1501 cgtgagagttgttgaagccgtgcatg 1476
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gtggaaagcggggtgcaggtg 318 ||||||||||||||||||||| Sbjct: 3404863 gtggaaagcggggtgcaggtg 3404843
>ref|NM_194800.1| Oryza sativa (japonica cultivar-group) putative anter-specific proline-rich protein (OSJNBa0029P06.18), mRNA Length = 972 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 atgagctcgttggccctgtccgtggggtggta 257 ||||||| || |||||| |||||||||||||| Sbjct: 932 atgagcttgtaggccctctccgtggggtggta 901
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gccggtcgatgatgtcctgg 405 |||||||||||||||||||| Sbjct: 2352200 gccggtcgatgatgtcctgg 2352181
>ref|XM_806065.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506681.20) partial mRNA Length = 2625 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gtggaaagcggggtgcaggt 317 |||||||||||||||||||| Sbjct: 892 gtggaaagcggggtgcaggt 911
>ref|XM_814651.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506825.20) partial mRNA Length = 2637 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gtggaaagcggggtgcaggt 317 |||||||||||||||||||| Sbjct: 904 gtggaaagcggggtgcaggt 923
>gb|AY271930.1|AY271928S3 Pauropsalta johanae elongation factor-1 alpha gene, partial sequence Length = 489 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gtgctgttggcaacgactgt 194 |||||||||||||||||||| Sbjct: 58 gtgctgttggcaacgactgt 77
>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence Length = 122319 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 atgagctcgttggccctgtccgtggggtggta 257 ||||||| || |||||| |||||||||||||| Sbjct: 40814 atgagcttgtaggccctctccgtggggtggta 40783
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence Length = 151533 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 atgagctcgttggccctgtccgtggggtggta 257 ||||||| || |||||| |||||||||||||| Sbjct: 132347 atgagcttgtaggccctctccgtggggtggta 132316
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 atgagctcgttggccctgtccgtggggtggta 257 ||||||| || |||||| |||||||||||||| Sbjct: 2475615 atgagcttgtaggccctctccgtggggtggta 2475584
>dbj|AK100609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107L07, full insert sequence Length = 1299 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 atgagctcgttggccctgtccgtggggtggta 257 ||||||| || |||||| |||||||||||||| Sbjct: 1041 atgagcttgtaggccctctccgtggggtggta 1010
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 atgagctcgttggccctgtccgtggggtggta 257 ||||||| || |||||| |||||||||||||| Sbjct: 2475566 atgagcttgtaggccctctccgtggggtggta 2475535 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,158,769 Number of Sequences: 3902068 Number of extensions: 2158769 Number of successful extensions: 37055 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36937 Number of HSP's gapped (non-prelim): 116 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)