ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25e11 |
|---|---|
| Clone Library Name | barley_pub |
>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (RNP21.4) Length = 201 Score = 62.8 bits (151), Expect = 8e-10 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 2/174 (1%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 EECF V G + + F V + + + V++ D+ G D ++S K+ F Sbjct: 30 EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82 Query: 461 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALY 288 G ++FCF+N+ + + + F + +G + H + L E I +L A+ Sbjct: 83 AAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMT 142 Query: 287 NIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFE 126 ++ EQ ++E + +N+N + R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 143 AVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (Sid 394) Length = 201 Score = 62.8 bits (151), Expect = 8e-10 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 2/174 (1%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 EECF V G + + F V + + + V++ D+ G D ++S K+ F Sbjct: 30 EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82 Query: 461 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALY 288 G ++FCF+N+ + + + F + +G + H + L E I +L A+ Sbjct: 83 AAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMT 142 Query: 287 NIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFE 126 ++ EQ ++E + +N+N + R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 143 AVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) Length = 201 Score = 62.8 bits (151), Expect = 8e-10 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 2/174 (1%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 EECF V G + + F V + + + V++ D+ G D ++S K+ F Sbjct: 30 EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82 Query: 461 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALY 288 G ++FCF+N+ + + + F + +G + H + L E I +L A+ Sbjct: 83 AAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMT 142 Query: 287 NIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFE 126 ++ EQ ++E + +N+N + R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 143 AVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor| (COPI-coated vesicle membrane protein p24) (Fragment) Length = 196 Score = 62.8 bits (151), Expect = 8e-10 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 2/174 (1%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 EECF V G + + F V + + + V++ D+ G D ++S K+ F Sbjct: 25 EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 77 Query: 461 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALY 288 G ++FCF+N+ + + + F + +G + H + L E I +L A+ Sbjct: 78 AAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMT 137 Query: 287 NIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFE 126 ++ EQ ++E + +N+N + R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 138 AVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 191
>TMED7_HUMAN (Q9Y3B3) Transmembrane emp24 domain-containing protein 7 precursor| Length = 224 Score = 59.3 bits (142), Expect = 9e-09 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 7/187 (3%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 ++CF ++ +G + F VI T HY VD ++D +G + K D F F Sbjct: 46 KQCFYEDIA-QGTKCTLEFQVI---TGGHYD---VDCRLEDPDGKVLYKEMKKQYDSFTF 98 Query: 461 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGH-YSYFDQHAKDEHFSPLFEQIAKLDEAL 291 K G ++FCF+N+ + H+T+ FD VG F + + + + EAL Sbjct: 99 TASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEAL 158 Query: 290 YN-IQFEQHW--LEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLF-ER 123 + I ++ H+ EAQ +A E+++ R + ++ E+ L+ S+ QV+LL+ F ++ Sbjct: 159 KSVIDYQTHFRLREAQGRSRA---EDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDK 215 Query: 122 KLGTSRV 102 + T+RV Sbjct: 216 RTTTTRV 222
>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor| Length = 203 Score = 58.9 bits (141), Expect = 1e-08 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 8/146 (5%) Frame = -3 Query: 539 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK----SPYHETIDFDVHVGH 372 +D+ + + ++ ++S KF F GV+ +CF NK +P ++ H Sbjct: 55 IDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPH 114 Query: 371 Y----SYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAI 204 + +Q A D + L E + +L AL +++ EQ ++E + +NEN + R + Sbjct: 115 QQAPGAAANQDAADN--AKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVV 172 Query: 203 HKALFESAALITASVIQVYLLRRLFE 126 A FE+ L+ +V Q++ L+R FE Sbjct: 173 MWAAFEAFVLVGMTVGQIFYLKRFFE 198
>TMED3_MOUSE (Q78IS1) Transmembrane emp24 domain-containing protein 3 precursor| Length = 221 Score = 57.4 bits (137), Expect = 4e-08 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 4/183 (2%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 ++CF VE +G + + VI T HY VD V+D G + K D F + Sbjct: 42 KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPRGNVIYRETKKQYDSFTY 94 Query: 461 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYF--DQHAKDEHFSPLFEQIAKLDEA 294 + +GV+RFCF+N+ + H+T+ FD VG D + + + + EA Sbjct: 95 KTEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEA 154 Query: 293 LYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFERKLG 114 L + Q + + E+++ R + ++ E+ AL S QV LL+ F K Sbjct: 155 LKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRP 214 Query: 113 TSR 105 +R Sbjct: 215 VNR 217
>TMED3_HUMAN (Q9Y3Q3) Transmembrane emp24 domain-containing protein 3 precursor| (Membrane protein p24B) Length = 217 Score = 56.6 bits (135), Expect = 6e-08 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 4/183 (2%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 ++CF VE +G + + VI T HY VD V+D G + K D F + Sbjct: 38 KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPQGNTIYRETKKQYDSFTY 90 Query: 461 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYF--DQHAKDEHFSPLFEQIAKLDEA 294 + +GV++FCF+N+ + H+T+ FD VG D + + + + EA Sbjct: 91 RAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEA 150 Query: 293 LYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFERKLG 114 L + Q + + E+++ R + ++ E+ AL S QV LL+ F K Sbjct: 151 LKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRP 210 Query: 113 TSR 105 SR Sbjct: 211 ISR 213
>TMED3_RAT (Q6AY25) Transmembrane emp24 domain-containing protein 3 precursor| Length = 221 Score = 55.5 bits (132), Expect = 1e-07 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 4/183 (2%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 ++CF VE +G + + VI T HY VD V+D G + K D F + Sbjct: 42 KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPMGNIIYRETKKQYDSFTY 94 Query: 461 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYF--DQHAKDEHFSPLFEQIAKLDEA 294 + +GV+RFCF+N+ + H+T+ FD VG D + + + + EA Sbjct: 95 KTEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEA 154 Query: 293 LYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFERKLG 114 L + Q + + E+++ R + ++ E+ AL S QV LL+ F K Sbjct: 155 LKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRP 214 Query: 113 TSR 105 +R Sbjct: 215 INR 217
>TMEDA_FUGRU (Q90515) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (S31III125) Length = 213 Score = 53.1 bits (126), Expect = 7e-07 Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 4/165 (2%) Frame = -3 Query: 602 TVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFT 423 TVH S V+ DG + DS+ + D T KF F + + CF Sbjct: 54 TVHTSSTVVG---------DGSIFKITDSSSHTLYSKEDATKGKFAFTTEDYDMFEVCFE 104 Query: 422 NKSPYH---ETIDFDVHVG-HYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEA 255 +K + ++ D+ G +++ AK E PL ++ +L++ +I + +++ Sbjct: 105 SKCTGRVPDQLVNLDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKK 164 Query: 254 QTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFERK 120 + + NE+ + R ++ ++F LI + QV+ LRR F+ K Sbjct: 165 REEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAK 209
>TMEDA_PONPY (Q5RE32) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 51.2 bits (121), Expect = 3e-06 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -3 Query: 533 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 366 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 365 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 186 +++ AK E PL ++ +L++ +I + ++E + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFS 193 Query: 185 SAALITASVIQVYLLRRLFERK 120 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_HUMAN (P49755) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (p24delta) (S31III125) (S31I125) (Tmp-21-I) Length = 219 Score = 49.7 bits (117), Expect = 7e-06 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -3 Query: 533 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 366 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 365 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 186 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 185 SAALITASVIQVYLLRRLFERK 120 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_BOVIN (Q5E971) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 49.7 bits (117), Expect = 7e-06 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -3 Query: 533 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 366 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 365 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 186 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 185 SAALITASVIQVYLLRRLFERK 120 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_MESAU (O35587) Transmembrane protein Tmp21 precursor (21 kDa| transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 49.3 bits (116), Expect = 1e-05 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -3 Query: 533 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 366 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 365 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 186 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 185 SAALITASVIQVYLLRRLFERK 120 LI + QV+ LRR F+ K Sbjct: 194 MLCLIGLATWQVFYLRRFFKAK 215
>TMEDA_RAT (Q63584) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -3 Query: 533 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 366 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 365 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 186 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 185 SAALITASVIQVYLLRRLFERK 120 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_MOUSE (Q9D1D4) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -3 Query: 533 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 366 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 365 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 186 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 185 SAALITASVIQVYLLRRLFERK 120 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_RABIT (Q28735) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -3 Query: 533 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 366 L + DS G + D + KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 365 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 186 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 185 SAALITASVIQVYLLRRLFERK 120 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>EMP24_YEAST (P32803) Endosomal P24B protein precursor (24 kDa endomembrane| protein) (Basic 24 kDa late endocytic intermediate component) Length = 203 Score = 45.1 bits (105), Expect = 2e-04 Identities = 36/170 (21%), Positives = 72/170 (42%) Frame = -3 Query: 635 CFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEFIV 456 CF ++ +GD + +SF + G ++ ++ RD + + Sbjct: 32 CFFEDLS-KGDELSISFQFGDRNPQSSSQLTGDFIIYGPERHEVLKTVRDTSHGEITLSA 90 Query: 455 QKRGVHRFCFTNKSPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQF 276 +G ++CF N++ ET D ++ Y D D + + L + KL + ++ Sbjct: 91 PYKGHFQYCFLNENTGIETKDVTFNIHGVVYVD--LDDPNTNTLDSAVRKLSKLTREVKD 148 Query: 275 EQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFE 126 EQ ++ + E+ + R ++F+ +I S+ Q+Y LRR FE Sbjct: 149 EQSYIVIRERTHRNTAESTNDRVKWWSIFQLGVVIANSLFQIYYLRRFFE 198
>YE98_SCHPO (O13770) Hypothetical protein C17A5.08 precursor| Length = 210 Score = 38.9 bits (89), Expect = 0.013 Identities = 33/179 (18%), Positives = 76/179 (42%), Gaps = 6/179 (3%) Frame = -3 Query: 641 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 462 ++C+ + + G+ H ++ V + VD ++K + V + + F Sbjct: 32 KQCYYLDSFHTGEKTHFTYAVQSGGS------FDVDYMIKAPSQKTVALGKKRRQADVFF 85 Query: 461 IVQKRGVHRFCFTNK-SPYHETI-----DFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLD 300 ++++G + FCF N S + + I + + + AKD + + ++ Sbjct: 86 TLEEKGEYEFCFDNHMSTFTDKIVTMEITMENELSLPALTRDEAKDYKKDSMQSTVLEIS 145 Query: 299 EALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRLFER 123 AL I Q++ + + R ++ R +L ES ++ S +QV++++ F+R Sbjct: 146 TALSEIDRVQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVVALSALQVFIVKTFFKR 204
>UVRA_HELPY (P56474) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 935 Score = 37.0 bits (84), Expect = 0.049 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -3 Query: 314 IAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR--RAIHKALFESAALITASVIQ 153 + +LDE ++ + ++H +EA DR + NEN SR AI KAL ES + ++Q Sbjct: 183 MVRLDEEIHLHKTKKHTIEAVVDRVVVNNENASRIASAIEKALKESYGELEVEILQ 238
>ERP5_YEAST (P38819) Protein ERP5 precursor| Length = 212 Score = 35.4 bits (80), Expect = 0.14 Identities = 27/135 (20%), Positives = 60/135 (44%), Gaps = 3/135 (2%) Frame = -3 Query: 515 NGAQVRDSRDKTSDKFEFIVQKRGVHRFCFT---NKSPYHETIDFDVHVGHYSYFDQHAK 345 N +V + ++ + F G HRFCFT +K + ++ +G+ D K Sbjct: 76 NDHRVLNQKNSHTGDVTFTALDTGEHRFCFTPFYSKKSATLRVFIELEIGNVEALDS-KK 134 Query: 344 DEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITA 165 E + L ++ +L + L +I+ EQ + + +E+ + + + ++F+ L+ Sbjct: 135 KEDMNSLKGRVGQLTQRLSSIRKEQDAIREKEAEFRNQSESANSKIMTWSVFQLLILLGT 194 Query: 164 SVIQVYLLRRLFERK 120 Q+ L+ F ++ Sbjct: 195 CAFQLRYLKNFFVKQ 209
>UVRA_HELPJ (Q9ZLD6) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 941 Score = 35.0 bits (79), Expect = 0.19 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -3 Query: 314 IAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR--RAIHKALFESAALITASVIQ 153 + +LDE ++ + ++H +EA DR I +EN SR A+ KAL ES + ++Q Sbjct: 189 MVRLDEEIHLHKTKKHTIEAVVDRVVINSENASRIASAVEKALKESYGELEVEILQ 244
>GLPB_HALSA (Q9HNS3) Probable anaerobic glycerol-3-phosphate dehydrogenase| subunit B (EC 1.1.99.5) (Anaerobic G-3-P dehydrogenase subunit B) (Anaerobic G3Pdhase B) Length = 427 Score = 31.6 bits (70), Expect = 2.1 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Frame = -3 Query: 620 VEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRG- 444 +E G + V+ ADT + GV+ V + NGA++ +S D E+++ G Sbjct: 272 LEAAGVRIETGNPVVDADT----TAGGVETVYVEKNGARIPNSAD------EYVLATGGL 321 Query: 443 VHRFCFTNKSPYHETIDFDVHVGH----YSYFDQHAKDEH 336 V + +++ +E I FD + H Y++FD A +H Sbjct: 322 VGKGIDSDRDAVYEPI-FDCRIAHSDDRYAWFDDDAFGDH 360
>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)| (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein) Length = 6885 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Frame = -3 Query: 419 KSPYHETIDFDVHVG------HYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLE 258 +S +E +F H+G H + + K +H L E I + + IQ +WLE Sbjct: 5131 ESKRYERTEFAEHLGEMNRQWHRVHGMLNRKIQHLEQLLESITESEN---KIQILNNWLE 5187 Query: 257 AQTDRQAILNENMSRRAIHKALFE 186 AQ +R L + S ++ K L + Sbjct: 5188 AQEERLKTLQKPESVISVQKLLLD 5211
>MDHC_PIG (P11708) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 302 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 472 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTV 226
>POXB_ECOLI (P07003) Pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) (Pyruvate| oxidase) (POX) (Pyruvate dehydrogenase [Ubiquinone]) [Contains: Alpha-peptide] Length = 572 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = -2 Query: 267 LARGPNRPASNIEREHEQEGHPQGTFRVGCAHYSQRHSSLSATPTLRAQA 118 LA + P+S I + QE HPQ FR C+HY + SS P + A A Sbjct: 96 LAIAAHIPSSEIGSGYFQETHPQELFR-ECSHYCELVSSPEQIPQVLAIA 144
>MDHC_HUMAN (P40925) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 302 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 472 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTV 226
>MDHC_BOVIN (Q3T145) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 302 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 472 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>MTMRD_XENLA (Q6NTN5) Myotubularin-related protein 13 (SET-binding factor 2)| Length = 1873 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Frame = +2 Query: 188 RKVPCGWPSCSCSRSILLAGRFGPLASAAQTECCKVLHLTLQFVQTKVKNVHLWHADQ-- 361 R + C CS S +A + PLA+A C K+ QF T V++ +W Q Sbjct: 613 RMMNCALQDCSGSEEYTIASQLLPLATAF---CRKLSAAVSQFAYTCVQDHGVWANQQFW 669 Query: 362 ---NTNNVQHARRSLW 400 N+VQ+ RSL+ Sbjct: 670 ETTFYNDVQNQVRSLY 685
>MDHC_RAT (O88989) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 302 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 472 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>MDHC_MOUSE (P14152) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 302 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 472 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>MDHC_FELCA (Q7YRU4) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 302 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 472 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVSHAKVKLHGKEVGVYDALKDDSWLKGEFITTV 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,320,238 Number of Sequences: 219361 Number of extensions: 1908143 Number of successful extensions: 5015 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 4851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5006 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
