ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470454.1| Oryza sativa (japonica cultivar-group), mRNA 64 6e-07
2gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome... 64 6e-07
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 64 6e-07
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
5dbj|AK072499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
6dbj|AK060748.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
7dbj|AB089269.1| Triticum aestivum D31 mRNA for fructan exohydrol... 48 0.035
8gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, c... 42 2.1
9gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cance... 42 2.1
10gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, comp... 42 2.1
11gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosom... 42 2.1
12emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on ch... 42 2.1
13gb|AC150858.4| Bos taurus BAC CH240-431L22 (Children's Hospital... 40 8.4
14gb|AC144385.2| Pan troglodytes BAC clone CH251-23H14 from X, com... 40 8.4
15gb|AY702011.1| Leishmania donovani strain MHOM/IN/1983/AG83 anti... 40 8.4
16gb|AC147070.5| Homo sapiens chromosome 4 clone RP13-1008F15, com... 40 8.4
17gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10 from 4, compl... 40 8.4
18gb|AC123037.4| Mus musculus BAC clone RP24-527F14 from chromosom... 40 8.4
19gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 40 8.4
20emb|CR854849.7| Human DNA sequence from clone RP13-79M23 on chro... 40 8.4
21emb|AL611962.6| Human DNA sequence from clone RP11-45J16 on chro... 40 8.4
22emb|AL603890.14| Human DNA sequence from clone RP11-584P2 on chr... 40 8.4
23emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chr... 40 8.4
24emb|AL365443.16| Human DNA sequence from clone RP11-219C24 on ch... 40 8.4
25emb|AL157712.14| Human DNA sequence from clone RP11-339B9 on chr... 40 8.4
26emb|AL035086.12|HS44A20 Human DNA sequence from clone RP1-44A20 ... 40 8.4
27emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacterioph... 40 8.4
28emb|AL935252.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 8.4
29emb|BX927375.6| Zebrafish DNA sequence from clone CH211-258B24 i... 40 8.4
30gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, comp... 40 8.4
31gb|DP000052.1| Sus scrofa target 126 genomic scaffold 40 8.4
32dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
34gb|AC126281.3| Homo sapiens cosmid clone XXcos-2173C8 from 4, co... 40 8.4
35gb|AC145688.4| Pan troglodytes BAC clone CH251-346A10 from chrom... 40 8.4
36gb|AF328509.1|AF328509 Homo sapiens clone 4qtel_2173c8t3 sequence 40 8.4
37gb|AF277315.6| Homo sapiens chromosome X clone RP5-865E18, RP5-1... 40 8.4
38gb|AC016696.8| Homo sapiens BAC clone RP11-130P22 from 2, comple... 40 8.4
39gb|AF261714.1|AF261714 Leptospira biflexa temperate bacteriophag... 40 8.4
40gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from 4, comple... 40 8.4
41dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
42dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
43dbj|AP006332.2| Homo sapiens genomic DNA, chromosome Un clone:CM... 40 8.4
44dbj|AP006225.1| Homo sapiens genomic DNA, chromosome Un, clone:C... 40 8.4
45gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosom... 40 8.4
46gb|AC125159.4| Mus musculus BAC clone RP24-394C23 from 6, comple... 40 8.4
47emb|AL672042.8| Mouse DNA sequence from clone RP23-91P22 on chro... 40 8.4
48gb|M19359.1|RATCRYG Rat gamma-crystallin gene cluster, encoding ... 40 8.4 
>ref|XM_470454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2474

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 573  ctcactactgtagaaaccagcagcttgtcaccgacaatctgtct 616
            |||||||||||||||||||  ||||||||||| |||||||||||
Sbjct: 2099 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtct 2056
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>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
             map S15179S, complete sequence
          Length = 166005

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 573   ctcactactgtagaaaccagcagcttgtcaccgacaatctgtct 616
             |||||||||||||||||||  ||||||||||| |||||||||||
Sbjct: 96494 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtct 96537
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 573      ctcactactgtagaaaccagcagcttgtcaccgacaatctgtct 616
                |||||||||||||||||||  ||||||||||| |||||||||||
Sbjct: 35698716 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtct 35698759
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 573      ctcactactgtagaaaccagcagcttgtcaccgacaatctgtct 616
                |||||||||||||||||||  ||||||||||| |||||||||||
Sbjct: 35788789 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtct 35788832
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>dbj|AK072499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125E22, full
            insert sequence
          Length = 3913

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 573  ctcactactgtagaaaccagcagcttgtcaccgacaatctgtct 616
            |||||||||||||||||||  ||||||||||| |||||||||||
Sbjct: 3557 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtct 3514
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>dbj|AK060748.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F11, full
            insert sequence
          Length = 2479

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 573  ctcactactgtagaaaccagcagcttgtcaccgacaatctgtct 616
            |||||||||||||||||||  ||||||||||| |||||||||||
Sbjct: 2123 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtct 2080
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>dbj|AB089269.1| Triticum aestivum D31 mRNA for fructan exohydrolase, complete cds
          Length = 2319

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 578  tactgtagaaaccagcagcttgtc 601
            ||||||||||||||||||||||||
Sbjct: 2247 tactgtagaaaccagcagcttgtc 2270
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>gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, complete sequence
          Length = 196776

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  gaaccaaacaaagctacacca 348
            |||||||||||||||||||||
Sbjct: 8458 gaaccaaacaaagctacacca 8438
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>gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186773

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 423   gtccttgtgctctccgtctcc 443
             |||||||||||||||||||||
Sbjct: 61158 gtccttgtgctctccgtctcc 61178
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>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence
          Length = 191144

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 423    gtccttgtgctctccgtctcc 443
              |||||||||||||||||||||
Sbjct: 142645 gtccttgtgctctccgtctcc 142665
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>gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosome 10, complete
             sequence
          Length = 178780

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 328   gaaccaaacaaagctacacca 348
             |||||||||||||||||||||
Sbjct: 53370 gaaccaaacaaagctacacca 53390
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>emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on chromosome 22, complete
             sequence
          Length = 186861

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 423   gtccttgtgctctccgtctcc 443
             |||||||||||||||||||||
Sbjct: 61370 gtccttgtgctctccgtctcc 61390
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>gb|AC150858.4| Bos taurus  BAC CH240-431L22 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 166138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   cagcaaaatagagaaaatgt 169
             ||||||||||||||||||||
Sbjct: 37177 cagcaaaatagagaaaatgt 37196
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>gb|AC144385.2| Pan troglodytes BAC clone CH251-23H14 from X, complete sequence
          Length = 126566

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 13366 tcaaaattaaaagaacaaat 13347
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>gb|AY702011.1| Leishmania donovani strain MHOM/IN/1983/AG83 antigen 2 mRNA,
           partial cds
          Length = 681

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 gcaaaatagagaaaatgtaa 171
           ||||||||||||||||||||
Sbjct: 645 gcaaaatagagaaaatgtaa 626
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>gb|AC147070.5| Homo sapiens chromosome 4 clone RP13-1008F15, complete sequence
          Length = 153296

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    tcaaaattaaaagaacaaat 215
              ||||||||||||||||||||
Sbjct: 107190 tcaaaattaaaagaacaaat 107171
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>gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10 from 4, complete sequence
          Length = 184963

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 60051 tcaaaattaaaagaacaaat 60070
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>gb|AC123037.4| Mus musculus BAC clone RP24-527F14 from chromosome 6, complete sequence
          Length = 137122

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    aaattaaaagaacaaatcta 218
              ||||||||||||||||||||
Sbjct: 127623 aaattaaaagaacaaatcta 127604
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>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    ctgtagaaaccagcagcttg 599
              ||||||||||||||||||||
Sbjct: 133779 ctgtagaaaccagcagcttg 133760
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>emb|CR854849.7| Human DNA sequence from clone RP13-79M23 on chromosome 1, complete
             sequence
          Length = 153012

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 65735 tcaaaattaaaagaacaaat 65716
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>emb|AL611962.6| Human DNA sequence from clone RP11-45J16 on chromosome 1 Contains a
             pseudogene similar to flavin-containing monooxygenase
             proteins and the gene for a novel protein similar to
             flavin-containing monoxygenase proteins, complete sequence
          Length = 83051

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 40541 tcaaaattaaaagaacaaat 40522
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>emb|AL603890.14| Human DNA sequence from clone RP11-584P2 on chromosome 1 Contains the
             3' end of a novel gene  similar to preferentially
             expressed antigen in melanoma (PRAME), two novel proteins
             similar to preferentially expressed antigen in melanoma
             (PRAME), a novel gene and a CpG island, complete sequence
          Length = 88806

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 64547 tcaaaattaaaagaacaaat 64566
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>emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chromosome 1 Contains a
             mitochondrial intermediate peptidase (MIPEP) pseudogene
             and a CpG island, complete sequence
          Length = 198794

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 93324 tcaaaattaaaagaacaaat 93305
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>emb|AL365443.16| Human DNA sequence from clone RP11-219C24 on chromosome 1 Contains six
             novel genes similar to preferentially expressed antigen in
             melanoma (PRAME), two novel genes, two preferentially
             expressed antigen in melanoma (PRAME) pseudogenes and a
             CpG island, complete sequence
          Length = 184591

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 90617 tcaaaattaaaagaacaaat 90598
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>emb|AL157712.14| Human DNA sequence from clone RP11-339B9 on chromosome 10 Contains two
             CpG islands, complete sequence
          Length = 131112

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 14843 tcaaaattaaaagaacaaat 14862
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>emb|AL035086.12|HS44A20 Human DNA sequence from clone RP1-44A20 on chromosome 6q23.1-24.3
             Contains part of the gene for a novel protein similar to
             C1-tetrahydrofolate synthases (contains DKFZP586G1517
             protein and FLJ21145, contains a tetrahydrofolate
             dehydrogenase/cyclohydrolase domain), part of a novel gene
             (contains FLJ31738 and KIAA1209) and a novel pseudogene
             similar to phosducin-like proteins. Contains a CpG island,
             complete sequence
          Length = 165090

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 63232 tcaaaattaaaagaacaaat 63213
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>emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacteriophage LE1
          Length = 73623

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  aaaatagagaaaatgtaaag 173
            ||||||||||||||||||||
Sbjct: 1273 aaaatagagaaaatgtaaag 1292
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>emb|AL935252.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 1/11
          Length = 343050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     catcaatcatagtacaaccg 61
              ||||||||||||||||||||
Sbjct: 261287 catcaatcatagtacaaccg 261306
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>emb|BX927375.6| Zebrafish DNA sequence from clone CH211-258B24 in linkage group 1,
             complete sequence
          Length = 53738

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tcagctcaaaattaaaagaa 210
             ||||||||||||||||||||
Sbjct: 14828 tcagctcaaaattaaaagaa 14847
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>gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, complete sequence
          Length = 142712

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 38118 tcaaaattaaaagaacaaat 38137
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>gb|DP000052.1| Sus scrofa target 126 genomic scaffold
          Length = 432382

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    aaaatagagaaaatgtaaag 173
              ||||||||||||||||||||
Sbjct: 179736 aaaatagagaaaatgtaaag 179755
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 526     gtagcagttcagcacctgcc 545
               ||||||||||||||||||||
Sbjct: 9660543 gtagcagttcagcacctgcc 9660524
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 526      gtagcagttcagcacctgcc 545
                ||||||||||||||||||||
Sbjct: 21886697 gtagcagttcagcacctgcc 21886678
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>gb|AC126281.3| Homo sapiens cosmid clone XXcos-2173C8 from 4, complete sequence
          Length = 39686

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 39306 tcaaaattaaaagaacaaat 39287
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>gb|AC145688.4| Pan troglodytes BAC clone CH251-346A10 from chromosome x, complete
              sequence
          Length = 174819

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    tcaaaattaaaagaacaaat 215
              ||||||||||||||||||||
Sbjct: 135148 tcaaaattaaaagaacaaat 135129
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>gb|AF328509.1|AF328509 Homo sapiens clone 4qtel_2173c8t3 sequence
          Length = 835

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 tcaaaattaaaagaacaaat 215
           ||||||||||||||||||||
Sbjct: 354 tcaaaattaaaagaacaaat 373
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>gb|AF277315.6| Homo sapiens chromosome X clone RP5-865E18, RP5-1087L19 map q28,
             complete sequence
          Length = 147234

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 90487 tcaaaattaaaagaacaaat 90468
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>gb|AC016696.8| Homo sapiens BAC clone RP11-130P22 from 2, complete sequence
          Length = 109431

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ctcaaaattaaaagaacaaa 214
             ||||||||||||||||||||
Sbjct: 40647 ctcaaaattaaaagaacaaa 40666
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>gb|AF261714.1|AF261714 Leptospira biflexa temperate bacteriophage LE1 Orf1, Orf2, Orf3,
            Orf4, and Orf5 genes, complete cds
          Length = 5259

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  aaaatagagaaaatgtaaag 173
            ||||||||||||||||||||
Sbjct: 3598 aaaatagagaaaatgtaaag 3617
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>gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from 4, complete sequence
          Length = 96776

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 68053 tcaaaattaaaagaacaaat 68072
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>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0706E03
          Length = 188028

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 526    gtagcagttcagcacctgcc 545
              ||||||||||||||||||||
Sbjct: 100640 gtagcagttcagcacctgcc 100621
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>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0041B22
          Length = 142446

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 526    gtagcagttcagcacctgcc 545
              ||||||||||||||||||||
Sbjct: 100373 gtagcagttcagcacctgcc 100354
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>dbj|AP006332.2| Homo sapiens genomic DNA, chromosome Un clone:CMF9-56D23, telomere
             region, complete sequence
          Length = 32289

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 15459 tcaaaattaaaagaacaaat 15478
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>dbj|AP006225.1| Homo sapiens genomic DNA, chromosome Un, clone:CMF-39K16, telomere
             region, complete sequence
          Length = 28943

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaaaattaaaagaacaaat 215
             ||||||||||||||||||||
Sbjct: 19457 tcaaaattaaaagaacaaat 19438
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>gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosome 7, complete sequence
          Length = 228892

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   agagtgtttccagttactaa 298
             ||||||||||||||||||||
Sbjct: 96745 agagtgtttccagttactaa 96764
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>gb|AC125159.4| Mus musculus BAC clone RP24-394C23 from 6, complete sequence
          Length = 190966

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   aaattaaaagaacaaatcta 218
             ||||||||||||||||||||
Sbjct: 36280 aaattaaaagaacaaatcta 36261
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>emb|AL672042.8| Mouse DNA sequence from clone RP23-91P22 on chromosome X, complete
             sequence
          Length = 198740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   accaggtacatcacggtaca 237
             ||||||||||||||||||||
Sbjct: 43277 accaggtacatcacggtaca 43258
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>gb|M19359.1|RATCRYG Rat gamma-crystallin gene cluster, encoding gamma-A (gamma 1-1),
            gamma-B (gamma 1-2), gamma-C (gamma 2-1), gamma-D (gamma
            2-2), and gamma-E (gamma 3-1) crystallins, complete cds
          Length = 54670

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 153  caaaatagagaaaatgtaaa 172
            ||||||||||||||||||||
Sbjct: 1948 caaaatagagaaaatgtaaa 1967


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,348,837
Number of Sequences: 3902068
Number of extensions: 5348837
Number of successful extensions: 106946
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106799
Number of HSP's gapped (non-prelim): 147
length of query: 618
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 595
effective length of database: 17,143,297,704
effective search space: 10200262133880
effective search space used: 10200262133880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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