Clone Name | rbasd25e04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY206371.1| Triticum aestivum photosystem II polypeptide mRNA, partial cds; nuclear gene for chloroplast product Length = 481 Score = 309 bits (156), Expect = 4e-81 Identities = 174/180 (96%) Strand = Plus / Minus Query: 135 gtgttacaggtagatgctttcttagccggcgagagcgctggtattgtagacgaggagggc 194 |||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||| | Sbjct: 323 gtgttacacgtagatgctctcttagccggcgagagcgctggtgttgtagacgaggaggac 264 Query: 195 gccgccgccgaggaggccggcgagggtgacggcccagataagaagcccggtcgttccacc 254 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 263 gccgccgccgaggaggccggcgagggtgacggcccagataagaagcccggtcgttccgcc 204 Query: 255 ggcgtagcggtcaccagattcggaccattcctctggcgtgtagattgggctgtagccgtc 314 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 203 ggcgtagcggtcaccagattcagaccattcctctggcgtgtagattgggctgtagccgtc 144 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 320 agtccgaggggcttgtcgaccttgatcttcttgccaccgc 359 ||||| |||||||||||||||||||||||||||||||||| Sbjct: 49 agtccaaggggcttgtcgaccttgatcttcttgccaccgc 10 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/74 (86%), Gaps = 2/74 (2%) Strand = Plus / Minus Query: 49 ccatctgttcggatgaattactttgcaccgttgatgacatacatgcacatta--tagcta 106 |||||||||||||| |||||||||||| ||||||| ||||||| |||| | |||||| Sbjct: 425 ccatctgttcggatcaattactttgcatcgttgattgcatacattcacaggaggtagcta 366 Query: 107 cgtagattacagag 120 ||||||||||||| Sbjct: 365 tgtagattacagag 352
>ref|XM_480562.1| Oryza sativa (japonica cultivar-group), mRNA Length = 616 Score = 172 bits (87), Expect = 6e-40 Identities = 141/159 (88%) Strand = Plus / Minus Query: 156 ttagccggcgagagcgctggtattgtagacgaggagggcgccgccgccgaggaggccggc 215 |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 477 ttagccggcgagggcgctggtgttgtagacgaggagggcgccgccgccgaggagcccggc 418 Query: 216 gagggtgacggcccagataagaagcccggtcgttccaccggcgtagcggtcaccagattc 275 |||||| ||||||||||| ||||||||||| |||||||| ||||| |||||| | Sbjct: 417 gagggtcacggcccagatcagaagcccggtggttccaccaacgtaggtgtcaccggtggg 358 Query: 276 ggaccattcctctggcgtgtagattgggctgtagccgtc 314 ||||||||||| |||| ||||||||||||||||||||| Sbjct: 357 agaccattcctccggcgagtagattgggctgtagccgtc 319 Score = 103 bits (52), Expect = 4e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 328 gggcttgtcgaccttgatcttcttgccaccgctgcagacgacggcgaaggaggagccccg 387 |||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||| Sbjct: 216 gggcttgtcggtcttgatcttcttcccaccgctgcagacgatggcgaaggaggatccccg 157 Query: 388 gcgggagagggacggcaggc 407 |||||||| |||||| |||| Sbjct: 156 gcgggagatggacggaaggc 137
>ref|XM_507163.1| PREDICTED Oryza sativa (japonica cultivar-group), P0556A11.19 mRNA Length = 711 Score = 172 bits (87), Expect = 6e-40 Identities = 141/159 (88%) Strand = Plus / Minus Query: 156 ttagccggcgagagcgctggtattgtagacgaggagggcgccgccgccgaggaggccggc 215 |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 473 ttagccggcgagggcgctggtgttgtagacgaggagggcgccgccgccgaggagcccggc 414 Query: 216 gagggtgacggcccagataagaagcccggtcgttccaccggcgtagcggtcaccagattc 275 |||||| ||||||||||| ||||||||||| |||||||| ||||| |||||| | Sbjct: 413 gagggtcacggcccagatcagaagcccggtggttccaccaacgtaggtgtcaccggtggg 354 Query: 276 ggaccattcctctggcgtgtagattgggctgtagccgtc 314 ||||||||||| |||| ||||||||||||||||||||| Sbjct: 353 agaccattcctccggcgagtagattgggctgtagccgtc 315 Score = 103 bits (52), Expect = 4e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 328 gggcttgtcgaccttgatcttcttgccaccgctgcagacgacggcgaaggaggagccccg 387 |||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||| Sbjct: 212 gggcttgtcggtcttgatcttcttcccaccgctgcagacgatggcgaaggaggatccccg 153 Query: 388 gcgggagagggacggcaggc 407 |||||||| |||||| |||| Sbjct: 152 gcgggagatggacggaaggc 133
>dbj|AK121083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063I15, full insert sequence Length = 711 Score = 172 bits (87), Expect = 6e-40 Identities = 141/159 (88%) Strand = Plus / Minus Query: 156 ttagccggcgagagcgctggtattgtagacgaggagggcgccgccgccgaggaggccggc 215 |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 473 ttagccggcgagggcgctggtgttgtagacgaggagggcgccgccgccgaggagcccggc 414 Query: 216 gagggtgacggcccagataagaagcccggtcgttccaccggcgtagcggtcaccagattc 275 |||||| ||||||||||| ||||||||||| |||||||| ||||| |||||| | Sbjct: 413 gagggtcacggcccagatcagaagcccggtggttccaccaacgtaggtgtcaccggtggg 354 Query: 276 ggaccattcctctggcgtgtagattgggctgtagccgtc 314 ||||||||||| |||| ||||||||||||||||||||| Sbjct: 353 agaccattcctccggcgagtagattgggctgtagccgtc 315 Score = 103 bits (52), Expect = 4e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 328 gggcttgtcgaccttgatcttcttgccaccgctgcagacgacggcgaaggaggagccccg 387 |||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||| Sbjct: 212 gggcttgtcggtcttgatcttcttcccaccgctgcagacgatggcgaaggaggatccccg 153 Query: 388 gcgggagagggacggcaggc 407 |||||||| |||||| |||| Sbjct: 152 gcgggagatggacggaaggc 133
>dbj|AK105055.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F10, full insert sequence Length = 640 Score = 172 bits (87), Expect = 6e-40 Identities = 141/159 (88%) Strand = Plus / Minus Query: 156 ttagccggcgagagcgctggtattgtagacgaggagggcgccgccgccgaggaggccggc 215 |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 501 ttagccggcgagggcgctggtgttgtagacgaggagggcgccgccgccgaggagcccggc 442 Query: 216 gagggtgacggcccagataagaagcccggtcgttccaccggcgtagcggtcaccagattc 275 |||||| ||||||||||| ||||||||||| |||||||| ||||| |||||| | Sbjct: 441 gagggtcacggcccagatcagaagcccggtggttccaccaacgtaggtgtcaccggtggg 382 Query: 276 ggaccattcctctggcgtgtagattgggctgtagccgtc 314 ||||||||||| |||| ||||||||||||||||||||| Sbjct: 381 agaccattcctccggcgagtagattgggctgtagccgtc 343 Score = 103 bits (52), Expect = 4e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 328 gggcttgtcgaccttgatcttcttgccaccgctgcagacgacggcgaaggaggagccccg 387 |||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||| Sbjct: 240 gggcttgtcggtcttgatcttcttcccaccgctgcagacgatggcgaaggaggatccccg 181 Query: 388 gcgggagagggacggcaggc 407 |||||||| |||||| |||| Sbjct: 180 gcgggagatggacggaaggc 161
>gb|U86018.1|OSU86018 Oryza sativa photosystem II 10 kDa polypeptide mRNA, complete cds Length = 580 Score = 172 bits (87), Expect = 6e-40 Identities = 141/159 (88%) Strand = Plus / Minus Query: 156 ttagccggcgagagcgctggtattgtagacgaggagggcgccgccgccgaggaggccggc 215 |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 416 ttagccggcgagggcgctggtgttgtagacgaggagggcgccgccgccgaggagcccggc 357 Query: 216 gagggtgacggcccagataagaagcccggtcgttccaccggcgtagcggtcaccagattc 275 |||||| ||||||||||| ||||||||||| |||||||| ||||| |||||| | Sbjct: 356 gagggtcacggcccagatcagaagcccggtggttccaccaacgtaggtgtcaccggtggg 297 Query: 276 ggaccattcctctggcgtgtagattgggctgtagccgtc 314 ||||||||||| |||| ||||||||||||||||||||| Sbjct: 296 agaccattcctccggcgagtagattgggctgtagccgtc 258 Score = 103 bits (52), Expect = 4e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 328 gggcttgtcgaccttgatcttcttgccaccgctgcagacgacggcgaaggaggagccccg 387 |||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||| Sbjct: 155 gggcttgtcggtcttgatcttcttcccaccgctgcagacgatggcgaaggaggatccccg 96 Query: 388 gcgggagagggacggcaggc 407 |||||||| |||||| |||| Sbjct: 95 gcgggagatggacggaaggc 76
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 143 bits (72), Expect = 5e-31 Identities = 90/96 (93%) Strand = Plus / Plus Query: 156 ttagccggcgagagcgctggtattgtagacgaggagggcgccgccgccgaggaggccggc 215 |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 5800357 ttagccggcgagggcgctggtgttgtagacgaggagggcgccgccgccgaggagcccggc 5800416 Query: 216 gagggtgacggcccagataagaagcccggtcgttcc 251 |||||| ||||||||||| ||||||||||| ||||| Sbjct: 5800417 gagggtcacggcccagatcagaagcccggtggttcc 5800452 Score = 103 bits (52), Expect = 4e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 328 gggcttgtcgaccttgatcttcttgccaccgctgcagacgacggcgaaggaggagccccg 387 |||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||| Sbjct: 5801772 gggcttgtcggtcttgatcttcttcccaccgctgcagacgatggcgaaggaggatccccg 5801831 Query: 388 gcgggagagggacggcaggc 407 |||||||| |||||| |||| Sbjct: 5801832 gcgggagatggacggaaggc 5801851 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 277 gaccattcctctggcgtgtagattgggctg 306 ||||||||||| |||| ||||||||||||| Sbjct: 5801149 gaccattcctccggcgagtagattgggctg 5801178 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 ||||||||||||| |||||||||| Sbjct: 25883082 cgccgccgaggagtccggcgaggg 25883059 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 acgaggagggcgccgccgccgagg 207 |||||||||| ||||||||||||| Sbjct: 8339937 acgaggagggtgccgccgccgagg 8339960
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0556A11 Length = 138096 Score = 143 bits (72), Expect = 5e-31 Identities = 90/96 (93%) Strand = Plus / Plus Query: 156 ttagccggcgagagcgctggtattgtagacgaggagggcgccgccgccgaggaggccggc 215 |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 54502 ttagccggcgagggcgctggtgttgtagacgaggagggcgccgccgccgaggagcccggc 54561 Query: 216 gagggtgacggcccagataagaagcccggtcgttcc 251 |||||| ||||||||||| ||||||||||| ||||| Sbjct: 54562 gagggtcacggcccagatcagaagcccggtggttcc 54597 Score = 103 bits (52), Expect = 4e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 328 gggcttgtcgaccttgatcttcttgccaccgctgcagacgacggcgaaggaggagccccg 387 |||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||| Sbjct: 55917 gggcttgtcggtcttgatcttcttcccaccgctgcagacgatggcgaaggaggatccccg 55976 Query: 388 gcgggagagggacggcaggc 407 |||||||| |||||| |||| Sbjct: 55977 gcgggagatggacggaaggc 55996 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 277 gaccattcctctggcgtgtagattgggctg 306 ||||||||||| |||| ||||||||||||| Sbjct: 55294 gaccattcctccggcgagtagattgggctg 55323
>dbj|AK103688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136G12, full insert sequence Length = 2703 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 340 cttgatcttcttgccaccgctgcagacgacggcgaaggaggagccccggcgggagaggga 399 |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||| Sbjct: 200 cttgatcttcttcccaccgctgcagacgatggcgaaggaggatccccggcgggagatgga 141 Query: 400 cggcaggc 407 ||| |||| Sbjct: 140 cggaaggc 133
>gb|AF262979.1|AF262979 Triticum aestivum protein disulfide isomerase 1 precursor (PDI1) mRNA, complete cds Length = 1784 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggaggccg 213 ||||||| |||||||||||||||||||| Sbjct: 101 gaggaggccgccgccgccgaggaggccg 128
>emb|AJ868105.1| Triticum aestivum subsp. aestivum mRNA for protein disulfide isomerase (PDI gene), clone CPDI-4A Length = 1745 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggaggccg 213 ||||||| |||||||||||||||||||| Sbjct: 108 gaggaggccgccgccgccgaggaggccg 135
>emb|AJ868102.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide isomerase, exons 1-10, clone GPDI-4A Length = 3561 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggaggccg 213 ||||||| |||||||||||||||||||| Sbjct: 108 gaggaggccgccgccgccgaggaggccg 135
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 gggcgccgccgccgaggaggccggcg 216 ||||||| |||||||||||||||||| Sbjct: 3325859 gggcgcccccgccgaggaggccggcg 3325834
>ref|NM_190628.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 333 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccg 213 |||||||||||||||||||||| Sbjct: 75 ggcgccgccgccgaggaggccg 54
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagggtgacg 225 ||||||||||||| |||||||||||| Sbjct: 2296707 cgccgaggaggcccgcgagggtgacg 2296682
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 ggcgccgccgccgaggaggccg 213 |||||||||||||||||||||| Sbjct: 36647721 ggcgccgccgccgaggaggccg 36647742 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 1486758 cgccgaggaggccggcgagg 1486739 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 1443113 cgccgaggaggccggcgagg 1443094
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 ggcgccgccgccgaggaggccg 213 |||||||||||||||||||||| Sbjct: 120987 ggcgccgccgccgaggaggccg 121008
>dbj|AK101770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064I03, full insert sequence Length = 829 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccg 213 |||||||||||||||||||||| Sbjct: 189 ggcgccgccgccgaggaggccg 168
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 gccgccgaggaggccggcgagg 219 |||||||||||||||||||||| Sbjct: 521772 gccgccgaggaggccggcgagg 521751
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggcgccgccgccgaggaggcc 212 ||||||||||||||||||||| Sbjct: 141277 ggcgccgccgccgaggaggcc 141297
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 agacgaggagggcgccgccgccgag 206 ||||||||| ||||||||||||||| Sbjct: 331553 agacgaggaaggcgccgccgccgag 331577
>ref|XM_484041.4| PREDICTED: Mus musculus chromodomain helicase DNA binding protein 3, transcript variant 1 (Chd3), mRNA Length = 7464 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggagg 210 ||||||| ||||||||||||||||| Sbjct: 106 gaggaggacgccgccgccgaggagg 130
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 ccttgatcttcttgccaccgc 359 ||||||||||||||||||||| Sbjct: 1016828 ccttgatcttcttgccaccgc 1016808
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccgaggag 209 |||||||| |||||||||||||||| Sbjct: 30809 cgaggaggtcgccgccgccgaggag 30833
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 195 gccgccgccgaggaggccggcgagg 219 ||||||||||||||||||| ||||| Sbjct: 93382 gccgccgccgaggaggccgccgagg 93358
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgaggg 220 ||||||||||||||||||||| Sbjct: 118610 cgccgaggaggccggcgaggg 118590
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccggcg 216 |||| |||||||||||||||||||| Sbjct: 29027 ggcggcgccgccgaggaggccggcg 29003
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccggcg 216 |||| |||||||||||||||||||| Sbjct: 128554 ggcggcgccgccgaggaggccggcg 128530
>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the Chd3 gene for chromodomain helicase DNA binding protein 3, five novel genes, the 3' end of the gene for a novel protein similar to dynein and four CpG islands, complete sequence Length = 165212 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 gaggagggcgccgccgccgaggagg 210 ||||||| ||||||||||||||||| Sbjct: 26856 gaggaggacgccgccgccgaggagg 26832
>emb|AJ277379.1|TTU277379 Triticum turgidum subsp. durum mRNA for protein disulfide isomerase (Pdi gene), clone pPDICW1V Length = 1659 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 gagggcgccgccgccgaggaggccg 213 |||| |||||||||||||||||||| Sbjct: 80 gaggccgccgccgccgaggaggccg 104
>emb|AJ277377.1|TTU277377 Triticum turgidum subsp. durum Pdi gene for protein disulfide isomerase, exons 1-10, clone pPDIGW1VT Length = 3476 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 gagggcgccgccgccgaggaggccg 213 |||| |||||||||||||||||||| Sbjct: 80 gaggccgccgccgccgaggaggccg 104
>gb|AC104581.22| Homo sapiens chromosome 17, clone RP11-1099M24, complete sequence Length = 187718 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggagg 210 ||||||| ||||||||||||||||| Sbjct: 47915 gaggaggacgccgccgccgaggagg 47939
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccgaggag 209 ||||||| ||||||||||||||||| Sbjct: 190943 cgaggagagcgccgccgccgaggag 190967
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccggcg 216 |||| |||||||||||||||||||| Sbjct: 25246887 ggcggcgccgccgaggaggccggcg 25246863 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccg 204 |||||||||||||||||||| Sbjct: 33591611 cgaggagggcgccgccgccg 33591630 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gcgccgccgccgaggaggcc 212 |||||||||||||||||||| Sbjct: 19127676 gcgccgccgccgaggaggcc 19127695 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 4983269 cgccgccgccgaggaggccg 4983250 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 4824091 cgccgccgccgaggaggccg 4824072
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggcgccgccgccgaggaggcc 212 ||||||||||||||||||||| Sbjct: 18668162 ggcgccgccgccgaggaggcc 18668182
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 gcgccgccgccgaggaggccg 213 ||||||||||||||||||||| Sbjct: 4822038 gcgccgccgccgaggaggccg 4822018 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 gccgccgccgaggaggccggc 215 ||||||||||||||||||||| Sbjct: 2832560 gccgccgccgaggaggccggc 2832580 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gggcgccgccgccgaggagg 210 |||||||||||||||||||| Sbjct: 1594613 gggcgccgccgccgaggagg 1594632
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 gagggcgccgccgccgaggaggccg 213 |||| |||||||||||||||||||| Sbjct: 1241136 gaggacgccgccgccgaggaggccg 1241160
>ref|NM_211454.1| Eremothecium gossypii AGL275Wp (AGL275W), mRNA Length = 2265 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccgaggag 209 ||||||| ||||||||||||||||| Sbjct: 2010 cgaggagagcgccgccgccgaggag 2034
>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II, complete cds Length = 590 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 332 ttgtcgaccttgatcttcttgccaccgct 360 ||||| ||||||||||||||| ||||||| Sbjct: 169 ttgtcaaccttgatcttcttgacaccgct 141
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tgttcggatgaattactttg 73 |||||||||||||||||||| Sbjct: 1162207 tgttcggatgaattactttg 1162188
>ref|XM_549990.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2215 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 830 cgccgaggaggccggcgagg 811
>ref|XM_549996.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1909 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 770 cgccgaggaggccggcgagg 751
>ref|XM_483372.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2037 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 ||||||||||||| |||||||||| Sbjct: 162 cgccgccgaggagtccggcgaggg 139
>ref|XM_483371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1601 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 ||||||||||||| |||||||||| Sbjct: 831 cgccgccgaggagtccggcgaggg 808
>ref|XM_474188.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1035 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccg 204 |||||||||||||||||||| Sbjct: 42 cgaggagggcgccgccgccg 61
>ref|XM_469076.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1992 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 |||||||||||||| ||||||||| Sbjct: 1132 cgccgccgaggaggacggcgaggg 1109
>ref|XM_465041.1| Oryza sativa (japonica cultivar-group), mRNA Length = 639 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 183 gacgaggagggcgccgccgccgaggagg 210 ||||||| ||||||||||||||| |||| Sbjct: 262 gacgaggcgggcgccgccgccgacgagg 289
>ref|XM_525966.1| PREDICTED: Pan troglodytes similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC470585), mRNA Length = 2250 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 1944 cgccgccgccgaggaggccg 1925
>ref|XM_470358.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gccgccgaggaggccggcga 217 |||||||||||||||||||| Sbjct: 1107 gccgccgaggaggccggcga 1088
>ref|XM_472288.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 594 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gcgccgccgccgaggaggcc 212 |||||||||||||||||||| Sbjct: 22 gcgccgccgccgaggaggcc 3
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 183 gacgaggagggcgccgccgccgaggagg 210 |||||||||| ||| ||||||||||||| Sbjct: 1268016 gacgaggaggacgctgccgccgaggagg 1268043
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 3072319 cgccgccgccgaggaggccg 3072338
>ref|XM_361062.1| Magnaporthe grisea 70-15 hypothetical protein (MG03605.4) partial mRNA Length = 1104 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 agggcgccgccgccgaggag 209 |||||||||||||||||||| Sbjct: 515 agggcgccgccgccgaggag 534
>ref|XM_368606.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00638.4) partial mRNA Length = 1092 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 567 cgccgccgccgaggaggccg 586
>ref|XM_951879.1| Neurospora crassa OR74A hypothetical protein ( (NM_017382) RAB11a, member RAS oncogene family [Mus musculus] sp|Q9JLX1|R11A_MOUSE RAS-RELATED PROTEIN R> (NCU01523.1) partial mRNA Length = 645 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 gctggtattgtagacgaggagggcgccg 198 |||| ||| ||||||||||||||||||| Sbjct: 276 gctgatatcgtagacgaggagggcgccg 249
>ref|XM_327961.1| Neurospora crassa OR74A hypothetical protein ( (NM_017382) RAB11a, member RAS oncogene family [Mus musculus] sp|Q9JLX1|R11A_MOUSE RAS-RELATED PROTEIN R> (NCU01523.1) partial mRNA Length = 645 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 gctggtattgtagacgaggagggcgccg 198 |||| ||| ||||||||||||||||||| Sbjct: 276 gctgatatcgtagacgaggagggcgccg 249
>ref|NM_007967.1| Mus musculus even skipped homeotic gene 2 homolog (Evx2), mRNA Length = 1428 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 1134 cgccgccgccgaggaggccg 1115
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gccgccgaggaggccggcga 217 |||||||||||||||||||| Sbjct: 34937436 gccgccgaggaggccggcga 34937417 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 |||||||||||||| ||||||||| Sbjct: 25328853 cgccgccgaggaggacggcgaggg 25328830
>gb|AC127547.2| Mus musculus BAC clone RP24-498C13 from chromosome 8, complete sequence Length = 151070 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gttgatgacatacatgcaca 97 |||||||||||||||||||| Sbjct: 695 gttgatgacatacatgcaca 714
>ref|XM_542824.2| PREDICTED: Canis familiaris similar to zinc finger protein of the cerebellum 4 (LOC485704), mRNA Length = 2677 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 1245 cgccgccgccgaggaggccg 1226
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 216670 cgccgccgccgaggaggccg 216689
>ref|XM_569657.1| Cryptococcus neoformans var. neoformans JEC21 Dihydroorotate dehydrogenase, mitochondrial precursor (CNC04130) partial mRNA Length = 1825 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 183 gacgaggagggcgccgccgccgaggagg 210 |||||||||| ||| ||||||||||||| Sbjct: 150 gacgaggaggacgctgccgccgaggagg 123
>emb|X62287.1|SCWHIB S.coelicolor whiB gene Length = 3488 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 agggcgccgccgccgaggag 209 |||||||||||||||||||| Sbjct: 2164 agggcgccgccgccgaggag 2145
>gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, complete sequence Length = 213829 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 gttgatgacatacatgcaca 97 |||||||||||||||||||| Sbjct: 30228 gttgatgacatacatgcaca 30209
>emb|AL513284.12| Human DNA sequence from clone RP11-518D3 on chromosome 1 Contains the 3' end of a novel gene (FLJ42034, FLJ38762), the gene for a putative NFkB activating protein 373, a C-terminal binding protein 2 (CTBP2) pseudogene, a ribosomal protein S7 (RPS7) pseudogene and a CpG island, complete sequence Length = 169972 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 191 gggcgccgccgccgaggaggccggcgag 218 |||||| | ||||||||||||||||||| Sbjct: 119444 gggcgctgtcgccgaggaggccggcgag 119471
>emb|AL121917.20|HSJ309F20 Human DNA sequence from clone RP1-309F20 on chromosome 20 Contains part of the GNAS complex locus, a novel gene and a CpG island, complete sequence Length = 42807 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccg 204 |||||||||||||||||||| Sbjct: 30452 cgaggagggcgccgccgccg 30471
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 cgccgccgaggaggccggcgaggg 220 |||||||||||||| ||||||||| Sbjct: 114507 cgccgccgaggaggacggcgaggg 114530
>emb|CR933498.1|OSJN00303 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1168G10, complete sequence Length = 142295 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 2753 cgccgccgccgaggaggccg 2734
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 304560 cgccgccgccgaggaggccg 304579
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 agggcgccgccgccgaggag 209 |||||||||||||||||||| Sbjct: 284697 agggcgccgccgccgaggag 284716
>emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015C06, complete sequence Length = 147676 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 95676 cgccgccgccgaggaggccg 95657
>emb|AL670003.1|NCB9G16 Neurospora crassa DNA linkage group II BAC clone B9G16 Length = 69187 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 gctggtattgtagacgaggagggcgccg 198 |||| ||| ||||||||||||||||||| Sbjct: 31401 gctgatatcgtagacgaggagggcgccg 31374
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccg 204 |||||||||||||||||||| Sbjct: 22671 cgaggagggcgccgccgccg 22690
>emb|AJ277380.1|TTU277380 Triticum turgidum subsp. durum partial mRNA for protein disulfide isomerase (Pdi gene), clone pPDICW2VT Length = 1129 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggaggccg 213 ||||||| ||||||||||||||||||| Sbjct: 77 gaggaggctgccgccgccgaggaggccg 104
>emb|AJ277378.1|TTU277378 Triticum turgidum subsp. durum Pdi gene for protein disulfide isomerase, exons 1-8, clone pPDIGW2VT Length = 2721 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggaggccg 213 ||||||| ||||||||||||||||||| Sbjct: 77 gaggaggctgccgccgccgaggaggccg 104
>gb|AE005758.1| Caulobacter crescentus CB15 section 84 of 359 of the complete genome Length = 10793 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 6740 cgccgccgccgaggaggccg 6721
>gb|AF262980.1|AF262980 Triticum aestivum protein disulfide isomerase 2 precursor (PDI2) mRNA, complete cds Length = 1832 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggaggccg 213 ||||||| ||||||||||||||||||| Sbjct: 111 gaggaggctgccgccgccgaggaggccg 138
>ref|XM_939705.1| PREDICTED: Homo sapiens similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC650617), mRNA Length = 1611 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 1305 cgccgccgccgaggaggccg 1286
>ref|XM_292968.5| PREDICTED: Homo sapiens similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC344191), mRNA Length = 1611 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 1305 cgccgccgccgaggaggccg 1286
>gb|S34322.1|S34320S3 Evx-2=even-skipped 2 homeobox homolog [mice, C3H, Genomic, 720 nt, segment 3 of 3] Length = 720 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 426 cgccgccgccgaggaggccg 407
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccg 204 |||||||||||||||||||| Sbjct: 22865 cgaggagggcgccgccgccg 22884
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ttgatgacatacatgcacattata 102 |||||||||||||||| ||||||| Sbjct: 22335996 ttgatgacatacatgctcattata 22335973 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccggcgagg 219 ||||||||||||||||||| ||||||| Sbjct: 12161456 ggcgccgccgccgaggaggagggcgagg 12161429
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gccgccgaggaggccggcga 217 |||||||||||||||||||| Sbjct: 35027508 gccgccgaggaggccggcga 35027489 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 |||||||||||||| ||||||||| Sbjct: 25420162 cgccgccgaggaggacggcgaggg 25420139
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 183 gacgaggagggcgccgccgccgaggagg 210 ||||||| ||||||||||||||| |||| Sbjct: 11100660 gacgaggcgggcgccgccgccgacgagg 11100687
>gb|AF246983.1|AF246983 Homo sapiens GNAS1 gene, exon 1A, complete sequence, alternatively spliced Length = 3371 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccg 204 |||||||||||||||||||| Sbjct: 2685 cgaggagggcgccgccgccg 2704
>gb|AC009336.13|AC009336 Homo sapiens chromosome 2, clone RP11-387A1, complete sequence Length = 175667 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 64402 cgccgccgccgaggaggccg 64421
>gb|AE004675.1| Pseudomonas aeruginosa PAO1, section 236 of 529 of the complete genome Length = 10060 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gagggcgccgccgccgaggaggcc 212 |||||||||||||||||| ||||| Sbjct: 9383 gagggcgccgccgccgagcaggcc 9406
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gccgccgaggaggccggcga 217 |||||||||||||||||||| Sbjct: 78044 gccgccgaggaggccggcga 78063
>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0566A10 Length = 174367 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ttgatgacatacatgcacattata 102 |||||||||||||||| ||||||| Sbjct: 114419 ttgatgacatacatgctcattata 114396
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468A12 Length = 143018 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccggcgagg 219 ||||||||||||||||||| ||||||| Sbjct: 104245 ggcgccgccgccgaggaggagggcgagg 104218
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 52406 cgccgaggaggccggcgagg 52387 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 8761 cgccgaggaggccggcgagg 8742
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 ||||||||||||| |||||||||| Sbjct: 68869 cgccgccgaggagtccggcgaggg 68846
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_E11 Length = 133524 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 183 gacgaggagggcgccgccgccgaggagg 210 ||||||| ||||||||||||||| |||| Sbjct: 83354 gacgaggcgggcgccgccgccgacgagg 83381
>dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_D08 Length = 119557 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 183 gacgaggagggcgccgccgccgaggagg 210 ||||||| ||||||||||||||| |||| Sbjct: 19839 gacgaggcgggcgccgccgccgacgagg 19866
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 acgaggagggcgccgccgccgagg 207 |||||||||| ||||||||||||| Sbjct: 80046 acgaggagggtgccgccgccgagg 80069
>dbj|AK121464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145F10, full insert sequence Length = 2215 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 830 cgccgaggaggccggcgagg 811
>dbj|AK121052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055H11, full insert sequence Length = 2356 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 |||||||||||||| ||||||||| Sbjct: 1489 cgccgccgaggaggacggcgaggg 1466
>dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D01, full insert sequence Length = 1310 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gcgccgccgccgaggaggcc 212 |||||||||||||||||||| Sbjct: 443 gcgccgccgccgaggaggcc 424
>dbj|AK109876.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C02, full insert sequence Length = 1909 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 770 cgccgaggaggccggcgagg 751
>dbj|AK106874.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E01, full insert sequence Length = 1846 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccggcgagg 219 ||||||||||||||||||| ||||||| Sbjct: 267 ggcgccgccgccgaggaggagggcgagg 240
>emb|AJ329487.1|HSA329487 Homo sapiens genomic sequence surrounding NotI site, clone NR5-GC22C Length = 656 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 60 cgccgccgccgaggaggccg 41
>dbj|AK100411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087J11, full insert sequence Length = 1790 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gccgccgaggaggccggcga 217 |||||||||||||||||||| Sbjct: 1161 gccgccgaggaggccggcga 1142
>dbj|AK071255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086C22, full insert sequence Length = 1660 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccg 204 |||||||||||||||||||| Sbjct: 264 cgaggagggcgccgccgccg 283
>dbj|AK069311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012N17, full insert sequence Length = 1441 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gccgccgaggaggccggcga 217 |||||||||||||||||||| Sbjct: 829 gccgccgaggaggccggcga 810
>dbj|AK068928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170O13, full insert sequence Length = 3699 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgaggagggcgccgccgccg 204 |||||||||||||||||||| Sbjct: 334 cgaggagggcgccgccgccg 353
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 ggcgccgccgccgaggaggccggc 215 ||||||||||||||| |||||||| Sbjct: 5389441 ggcgccgccgccgagcaggccggc 5389418
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 agggcgccgccgccgaggaggccg 213 ||||||||||||||| |||||||| Sbjct: 2077835 agggcgccgccgccgtggaggccg 2077812
>gb|AC157835.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0013E09, complete sequence Length = 54682 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 28548 cgccgccgccgaggaggccg 28567 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 10386 cgccgccgccgaggaggccg 10405
>dbj|AK060618.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C02, full insert sequence Length = 2037 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 ||||||||||||| |||||||||| Sbjct: 162 cgccgccgaggagtccggcgaggg 139
>dbj|AK060548.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H04, full insert sequence Length = 1601 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgccgccgaggaggccggcgaggg 220 ||||||||||||| |||||||||| Sbjct: 831 cgccgccgaggagtccggcgaggg 808
>emb|AJ868106.1| Triticum aestivum subsp. aestivum mRNA for protein disulfide isomerase (PDI gene), clone CPDI-4B Length = 1739 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggaggccg 213 ||||||| ||||||||||||||||||| Sbjct: 108 gaggaggctgccgccgccgaggaggccg 135
>emb|AJ868103.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide isomerase, exons 1-10, clone GPDI-4B Length = 3527 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 186 gaggagggcgccgccgccgaggaggccg 213 ||||||| ||||||||||||||||||| Sbjct: 108 gaggaggctgccgccgccgaggaggccg 135
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gcgccgccgccgaggaggcc 212 |||||||||||||||||||| Sbjct: 61197 gcgccgccgccgaggaggcc 61216
>gb|M93128.1|MUSEVX2A Mouse homeobox protein (EVX2) mRNA, complete cds Length = 1428 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cgccgccgccgaggaggccg 213 |||||||||||||||||||| Sbjct: 1134 cgccgccgccgaggaggccg 1115
>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0044F08 Length = 141528 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 136379 cgccgaggaggccggcgagg 136360 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccgaggaggccggcgagg 219 |||||||||||||||||||| Sbjct: 92734 cgccgaggaggccggcgagg 92715 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,696,720 Number of Sequences: 3902068 Number of extensions: 2696720 Number of successful extensions: 56089 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54318 Number of HSP's gapped (non-prelim): 1768 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)