ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd25d24 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | PRP31_XENLA (Q5U5C5) U4/U6 small nuclear ribonucleoprotein Prp31... | 40 | 2e-06 | 2 | PRP31_MOUSE (Q8CCF0) U4/U6 small nuclear ribonucleoprotein Prp31... | 40 | 3e-06 | 3 | PRP31_HUMAN (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp31... | 40 | 3e-06 | 4 | PRP31_BRARE (Q7SXM7) U4/U6 small nuclear ribonucleoprotein Prp31... | 37 | 6e-06 | 5 | PRP31_XENTR (Q6NVP6) U4/U6 small nuclear ribonucleoprotein Prp31... | 38 | 1e-05 | 6 | PRP31_SCHPO (O42904) Pre-mRNA-splicing factor 31 | 43 | 8e-04 | 7 | PRP31_YEAST (P49704) Pre-mRNA-splicing factor 31 | 34 | 0.39 | 8 | DYM_CHICK (Q5ZLW3) Dymeclin | 30 | 5.6 |
|---|
>PRP31_XENLA (Q5U5C5) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 40.0 bits (92), Expect(2) = 2e-06 Identities = 25/75 (33%), Positives = 36/75 (48%) Frame = -2 Query: 600 KKKRGCLRL*KMKERYVVNDMMKLAN*MQFGIPEESPXXXXXXXXXXXXXXXGNGRLRVS 421 +KKRG R KMKER + ++ K AN M FG EE G+GR+R + Sbjct: 350 RKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRIRQA 409 Query: 420 AAQNKLAAKVAKKIQ 376 A+++K +Q Sbjct: 410 QVNEATKARISKTLQ 424 Score = 30.8 bits (68), Expect(2) = 2e-06 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 320 FTPVQGIELSNPQAHGNLLGSGTQNTYFSENGTFSRM 210 FTP+QG+E+ NPQA + Q YFS F ++ Sbjct: 453 FTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 488
>PRP31_MOUSE (Q8CCF0) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (Protein 61K) Length = 499 Score = 39.7 bits (91), Expect(2) = 3e-06 Identities = 25/75 (33%), Positives = 36/75 (48%) Frame = -2 Query: 600 KKKRGCLRL*KMKERYVVNDMMKLAN*MQFGIPEESPXXXXXXXXXXXXXXXGNGRLRVS 421 +KKRG R KMKER + ++ K AN M FG EE G+GR+R + Sbjct: 351 RKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQT 410 Query: 420 AAQNKLAAKVAKKIQ 376 A+++K +Q Sbjct: 411 QVNEATKARISKTLQ 425 Score = 30.8 bits (68), Expect(2) = 3e-06 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 320 FTPVQGIELSNPQAHGNLLGSGTQNTYFSENGTFSRM 210 FTP+QG+E+ NPQA + Q YFS F ++ Sbjct: 454 FTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 489
>PRP31_HUMAN (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (hPrp31) (Protein 61K) (Serologically defined breast cancer antigen NY-BR-99) Length = 499 Score = 39.7 bits (91), Expect(2) = 3e-06 Identities = 25/75 (33%), Positives = 36/75 (48%) Frame = -2 Query: 600 KKKRGCLRL*KMKERYVVNDMMKLAN*MQFGIPEESPXXXXXXXXXXXXXXXGNGRLRVS 421 +KKRG R KMKER + ++ K AN M FG EE G+GR+R + Sbjct: 351 RKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQT 410 Query: 420 AAQNKLAAKVAKKIQ 376 A+++K +Q Sbjct: 411 QVNEATKARISKTLQ 425 Score = 30.8 bits (68), Expect(2) = 3e-06 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 320 FTPVQGIELSNPQAHGNLLGSGTQNTYFSENGTFSRM 210 FTP+QG+E+ NPQA + Q YFS F ++ Sbjct: 454 FTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 489
>PRP31_BRARE (Q7SXM7) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 508 Score = 36.6 bits (83), Expect(2) = 6e-06 Identities = 23/75 (30%), Positives = 36/75 (48%) Frame = -2 Query: 600 KKKRGCLRL*KMKERYVVNDMMKLAN*MQFGIPEESPXXXXXXXXXXXXXXXGNGRLRVS 421 +KKRG R KMKER + ++ K AN M F E+ G+GR+R + Sbjct: 362 RKKRGGRRYRKMKERLGLTEIRKHANRMTFAEIEDDAYQEDLGFSLGQLGKSGSGRVRQA 421 Query: 420 AAQNKLAAKVAKKIQ 376 + A+++K +Q Sbjct: 422 QVNDSTKARISKSLQ 436 Score = 32.7 bits (73), Expect(2) = 6e-06 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 320 FTPVQGIELSNPQAHGNLLGSGTQNTYFSENGTFSRMSR 204 FTP+QG+E+ NPQA + Q YFS F ++ R Sbjct: 465 FTPLQGLEIVNPQAAEKKVAEANQK-YFSNMAEFLKVKR 502
>PRP31_XENTR (Q6NVP6) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 37.7 bits (86), Expect(2) = 1e-05 Identities = 24/75 (32%), Positives = 35/75 (46%) Frame = -2 Query: 600 KKKRGCLRL*KMKERYVVNDMMKLAN*MQFGIPEESPXXXXXXXXXXXXXXXGNGRLRVS 421 +KKRG R KMKER + ++ K AN M F EE G+GR+R + Sbjct: 350 RKKRGGRRYRKMKERLGLTEIRKQANRMSFAEIEEDAYQEDLGFSLGHLGKSGSGRIRQA 409 Query: 420 AAQNKLAAKVAKKIQ 376 A+++K +Q Sbjct: 410 QVNEATKARISKTLQ 424 Score = 30.8 bits (68), Expect(2) = 1e-05 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 320 FTPVQGIELSNPQAHGNLLGSGTQNTYFSENGTFSRM 210 FTP+QG+E+ NPQA + Q YFS F ++ Sbjct: 453 FTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 488
>PRP31_SCHPO (O42904) Pre-mRNA-splicing factor 31| Length = 518 Score = 42.7 bits (99), Expect = 8e-04 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Frame = -2 Query: 615 PDSKPKKKRGCLRL*KMKERYVVNDMMKLAN*MQFGIPEESPXXXXXXXXXXXXXXXGNG 436 PD +PK++RG R+ KMKE+Y V ++ +L N + FG E G G Sbjct: 370 PDDRPKRRRGGRRIRKMKEQYAVTELRRLQNRVAFGKEEAEVFNFDETEGLGMLGQEGEG 429 Query: 435 RLRVSA--AQNKLAAKVAKKIQ 376 ++R + ++ KL A+K Q Sbjct: 430 KIRAVSIDSRTKLRLPKARKAQ 451
>PRP31_YEAST (P49704) Pre-mRNA-splicing factor 31| Length = 494 Score = 33.9 bits (76), Expect = 0.39 Identities = 15/41 (36%), Positives = 27/41 (65%) Frame = -2 Query: 615 PDSKPKKKRGCLRL*KMKERYVVNDMMKLAN*MQFGIPEES 493 P+ +PKKKR + K KE++ ++ + +L N M+FG E++ Sbjct: 359 PEDQPKKKRAGRKFRKYKEKFRLSHVRQLQNRMEFGKQEQT 399
>DYM_CHICK (Q5ZLW3) Dymeclin| Length = 669 Score = 30.0 bits (66), Expect = 5.6 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 4/41 (9%) Frame = +3 Query: 69 FIHCDV----VVHELYLHVYILRGNCTYFTNHVVKLRIRSF 179 F+ C + ++ E +H Y++RG C +T+ +VK + +F Sbjct: 182 FLSCQLFHKEILRESLIHKYLMRGRCLPYTSRLVKTLLYNF 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,897,569 Number of Sequences: 219361 Number of extensions: 1801438 Number of successful extensions: 3894 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3760 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3894 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
