ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25d22 |
|---|---|
| Clone Library Name | barley_pub |
>GLRX_VERFO (O81187) Glutaredoxin| Length = 104 Score = 77.8 bits (190), Expect = 2e-14 Identities = 42/102 (41%), Positives = 58/102 (56%) Frame = -1 Query: 542 SMEQVTKLAGQRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRL 363 +M + +L +VV+F + C C +V LL LGA V+ELD + G +++ AL Sbjct: 2 AMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEW 61 Query: 362 LGRNPAVPVVFIGGRLAGCTDKVMSLHLGGKLVPLLRNAGAV 237 G+ VP VFIGG+ G DK +H GKL+PLL AGAV Sbjct: 62 TGQR-TVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102
>GLRX_RICCO (P55143) Glutaredoxin| Length = 102 Score = 75.5 bits (184), Expect = 1e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = -1 Query: 542 SMEQVTKLAGQRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRL 363 +M + +L AVV+F + C C +V LL LGA VVELD + G E++ AL Sbjct: 2 AMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEW 61 Query: 362 LGRNPAVPVVFIGGRLAGCTDKVMSLHLGGKLVPLLRNAGAV 237 G+ VP VFIGG+ G D + H G+LVPLL AGAV Sbjct: 62 TGQR-TVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102
>GLRX_LYCES (Q9ZR41) Glutaredoxin| Length = 108 Score = 67.8 bits (164), Expect = 2e-11 Identities = 39/102 (38%), Positives = 54/102 (52%) Frame = -1 Query: 542 SMEQVTKLAGQRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRL 363 S+ + ++ V +F + C C +V LL LGA VELD + G E++ AL Sbjct: 2 SLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEW 61 Query: 362 LGRNPAVPVVFIGGRLAGCTDKVMSLHLGGKLVPLLRNAGAV 237 G+ VP VFIG + G D +LH GKL+PLL AGA+ Sbjct: 62 TGQR-TVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAI 102
>GLRX_ORYSA (P55142) Glutaredoxin| Length = 112 Score = 65.5 bits (158), Expect = 1e-10 Identities = 37/89 (41%), Positives = 49/89 (55%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVVFIG 324 VV++ S C C V L LGA +ELD + G E++ AL G+ VP VFI Sbjct: 15 VVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQR-TVPNVFIN 73 Query: 323 GRLAGCTDKVMSLHLGGKLVPLLRNAGAV 237 G+ G D ++L+ GKLVPLL AGA+ Sbjct: 74 GKHIGGCDDTLALNNEGKLVPLLTEAGAI 102
>GLRX2_RAT (Q6AXW1) Glutaredoxin-2, mitochondrial precursor| Length = 157 Score = 59.3 bits (142), Expect = 8e-09 Identities = 32/95 (33%), Positives = 46/95 (48%) Frame = -1 Query: 539 MEQVTKLAGQRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLL 360 + Q+ + VVIF SSC C + D+ N VVELD G + ++AL ++ Sbjct: 50 VNQIQETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMT 109 Query: 359 GRNPAVPVVFIGGRLAGCTDKVMSLHLGGKLVPLL 255 G VP +F+ G G LH GKL+PL+ Sbjct: 110 GER-TVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143
>GLRX2_PONPY (Q5RC53) Glutaredoxin-2, mitochondrial precursor| Length = 161 Score = 59.3 bits (142), Expect = 8e-09 Identities = 33/95 (34%), Positives = 46/95 (48%) Frame = -1 Query: 539 MEQVTKLAGQRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLL 360 + Q+ + VVIF +SC C L RD+ N VVELD G + + AL ++ Sbjct: 54 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMT 113 Query: 359 GRNPAVPVVFIGGRLAGCTDKVMSLHLGGKLVPLL 255 G VP +F+ G G LH GKL+PL+ Sbjct: 114 G-GRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147
>GLRX2_HUMAN (Q9NS18) Glutaredoxin-2, mitochondrial precursor| Length = 164 Score = 58.2 bits (139), Expect = 2e-08 Identities = 32/95 (33%), Positives = 45/95 (47%) Frame = -1 Query: 539 MEQVTKLAGQRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLL 360 + Q+ + VVIF +SC C L D+ N VVELD G + + AL ++ Sbjct: 57 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 116 Query: 359 GRNPAVPVVFIGGRLAGCTDKVMSLHLGGKLVPLL 255 G VP +F+ G G LH GKL+PL+ Sbjct: 117 GER-TVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150
>GLRX2_MOUSE (Q923X4) Glutaredoxin-2, mitochondrial precursor| Length = 156 Score = 57.8 bits (138), Expect = 2e-08 Identities = 31/95 (32%), Positives = 45/95 (47%) Frame = -1 Query: 539 MEQVTKLAGQRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLL 360 + Q+ + VVIF +SC C + D+ N VELD G + + AL ++ Sbjct: 50 VNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMT 109 Query: 359 GRNPAVPVVFIGGRLAGCTDKVMSLHLGGKLVPLL 255 G VP +F+ GR G LH GKL+PL+ Sbjct: 110 GER-TVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143
>YZ73_CAEEL (Q19297) Hypothetical protein F10D7.3 in chromosome X| Length = 146 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPM-VVELDEDPRGKEMEKALVRLLGRNPAVPVVFI 327 V+++ + C + ++L + + M +VELD + +EM++ L + GR VP +FI Sbjct: 46 VMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQTEEMQEILKKYSGRT-TVPQLFI 104 Query: 326 GGRLAGCTDKVMSLHLGGKLVPLLRNAGAVW 234 G+ G D+ ++ G+L PLL A A++ Sbjct: 105 SGKFVGGHDETKAIEEKGELRPLLEKAHALF 135
>YD010_YEAST (Q12438) Glutaredoxin-like protein YDL010W precursor| Length = 231 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRD---LGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVV 333 ++IF S+C + LL + N ++ELD+ G+E+++ + + GR VP + Sbjct: 128 IIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRG-TVPNL 186 Query: 332 FIGGRLAGCTDKVMSLHLGGKLVPLLR 252 + G G +++ LH GKL+ L+ Sbjct: 187 LVNGVSRGGNEEIKKLHTQGKLLESLQ 213
>GLRX1_SCHPO (O36032) Glutaredoxin-1| Length = 101 Score = 38.5 bits (88), Expect = 0.015 Identities = 24/86 (27%), Positives = 38/86 (44%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVVFIG 324 VV+F S C CH ++ D V ++D G E++ L++ G+ VP +FI Sbjct: 17 VVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQR-TVPNIFIH 75 Query: 323 GRLAGCTDKVMSLHLGGKLVPLLRNA 246 + G +L G+L L A Sbjct: 76 QKHVGGNSDFQALFKKGELDSLFNTA 101
>YBM4_YEAST (P38068) Putative glutaredoxin-like protein YBR014C precursor| Length = 203 Score = 38.5 bits (88), Expect = 0.015 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Frame = -1 Query: 533 QVTKLAGQRAVVIFGMSSCCMCHTVTSLLRD---LGANPMVVELDEDPRGKEMEKALVRL 363 + K+ Q +++F + C + +LL + + VVELD KE++ + ++ Sbjct: 90 EYNKIMEQSPMIVFSKTGCPYSKKLKALLTNSYTFSPSYYVVELDRHEHTKELQDQIEKV 149 Query: 362 LGRNPAVPVVFIGGRLAGCTDKVMSLHLGGKLV 264 GR VP V IGG G ++ LH +L+ Sbjct: 150 TGRR-TVPNVIIGGTSRGGYTEIAELHKNDELL 181
>GLRX1_PIG (P12309) Glutaredoxin-1 (Thioltransferase-1) (TTase-1)| Length = 105 Score = 36.2 bits (82), Expect = 0.076 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPMVVE---LDEDPRGKEMEKALVRLLGRNPAVPVV 333 VV+F +C C LL L ++E + E++ L +L G VP V Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGAR-TVPRV 72 Query: 332 FIGGR-LAGCTDKVMSLHLGGKLVPLLRNAGAV 237 FIG + GCTD + S+H G+L+ L+ GA+ Sbjct: 73 FIGKECIGGCTD-LESMHKRGELLTRLQQIGAL 104
>GLRX3_ECOLI (P0AC62) Glutaredoxin-3 (Grx3)| Length = 82 Score = 35.0 bits (79), Expect = 0.17 Identities = 24/84 (28%), Positives = 40/84 (47%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVVFIG 324 V I+ +C CH +LL G + + +D + +E +++ GR VP +FI Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKRE---EMIKRSGRT-TVPQIFID 58 Query: 323 GRLAGCTDKVMSLHLGGKLVPLLR 252 + G D + +L G L PLL+ Sbjct: 59 AQHIGGCDDLYALDARGGLDPLLK 82
>GLRX3_ECOL6 (P0AC63) Glutaredoxin-3 (Grx3)| Length = 82 Score = 35.0 bits (79), Expect = 0.17 Identities = 24/84 (28%), Positives = 40/84 (47%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVVFIG 324 V I+ +C CH +LL G + + +D + +E +++ GR VP +FI Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKRE---EMIKRSGRT-TVPQIFID 58 Query: 323 GRLAGCTDKVMSLHLGGKLVPLLR 252 + G D + +L G L PLL+ Sbjct: 59 AQHIGGCDDLYALDARGGLDPLLK 82
>GLRX3_ECO57 (P0AC64) Glutaredoxin-3 (Grx3)| Length = 82 Score = 35.0 bits (79), Expect = 0.17 Identities = 24/84 (28%), Positives = 40/84 (47%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVVFIG 324 V I+ +C CH +LL G + + +D + +E +++ GR VP +FI Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKRE---EMIKRSGRT-TVPQIFID 58 Query: 323 GRLAGCTDKVMSLHLGGKLVPLLR 252 + G D + +L G L PLL+ Sbjct: 59 AQHIGGCDDLYALDARGGLDPLLK 82
>GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061| Length = 88 Score = 34.3 bits (77), Expect = 0.29 Identities = 26/91 (28%), Positives = 42/91 (46%) Frame = -1 Query: 521 LAGQRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAV 342 +A + I+ S+C C +LL+ G +D D +E A R G+ ++ Sbjct: 1 MAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAA--RANGKR-SL 57 Query: 341 PVVFIGGRLAGCTDKVMSLHLGGKLVPLLRN 249 P +FI + G D + +L GKL PLL + Sbjct: 58 PQIFIDDQHIGGCDDIYALDGAGKLDPLLHS 88
>PRX5_HAEIN (P44758) Hybrid peroxiredoxin hyPrx5 (EC 1.11.1.15) (Thioredoxin| reductase) Length = 241 Score = 33.5 bits (75), Expect = 0.49 Identities = 22/71 (30%), Positives = 30/71 (42%) Frame = -1 Query: 512 QRAVVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVV 333 Q ++ IF C C LL D G + +E G + VR + VP V Sbjct: 169 QESISIFTKPGCPFCAKAKQLLHDKG-----LSFEEIILGHDATIVSVRAVSGRTTVPQV 223 Query: 332 FIGGRLAGCTD 300 FIGG+ G +D Sbjct: 224 FIGGKHIGGSD 234
>GLRX_RICPR (Q9ZDW1) Glutaredoxin| Length = 95 Score = 33.1 bits (74), Expect = 0.64 Identities = 21/85 (24%), Positives = 40/85 (47%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVVFIG 324 ++I+ ++SC C +LL N + E++ +E ++ ++ G VP +FI Sbjct: 9 IIIYTLASCPYCIKAKALLDK--KNVIYEEIEVSNLTQEEKEKFIKKSGGKSTVPQIFID 66 Query: 323 GRLAGCTDKVMSLHLGGKLVPLLRN 249 G D + +L G+L LL + Sbjct: 67 NMHVGGCDDLFNLEKEGRLDKLLEH 91
>VIRG_AGRT9 (P62722) Regulatory protein virG| Length = 267 Score = 30.8 bits (68), Expect = 3.2 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = -1 Query: 458 TSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVVFIGGRLAGCTDKVMSLHL 279 T +L + +VV+L+ G+E +VR L +P++ I G TDKV++L L Sbjct: 64 TRVLSSATVDVVVVDLN---LGREDGLEIVRNLAAKSDIPIIIISGDRLEETDKVVALEL 120 Query: 278 G 276 G Sbjct: 121 G 121
>Y2150_BRAJA (Q45222) Hypothetical protein blr2150 (ORF8)| Length = 300 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -1 Query: 410 DEDPRGKEMEKALVRLLGRNPAVPVV-FIGGRLAGCT 303 D+D E + A++ LL R PA+PVV F+ LAG T Sbjct: 213 DKDRSAGEADNAVILLLQRYPAMPVVEFLNDELAGHT 249
>Y4KS_RHISN (P55537) Hypothetical 33.2 kDa protein y4kS| Length = 301 Score = 29.6 bits (65), Expect = 7.1 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -1 Query: 410 DEDPRGKEMEKALVRLLGRNPAVPVV-FIGGRLAGCT 303 D+D E + A + LL R PA+PVV F+ LAG T Sbjct: 214 DKDRSAGEADNAAILLLERYPAMPVVEFLNDELAGHT 250
>P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 391 Score = 29.6 bits (65), Expect = 7.1 Identities = 15/63 (23%), Positives = 29/63 (46%) Frame = -2 Query: 325 AAGSPDAPTRSCPFTSAASLSRCFVMQVLSGCSACAWEGFVDIMGVMHAGAASYATCSLL 146 AA +P+AP + P +A + + + + + +G +H+G A TC+ Sbjct: 65 AAPAPEAPAPAAPALAAPAPATSWPLSSSVPSQKTYHGNYGFRLGFLHSGTAKSVTCTYS 124 Query: 145 PCI 137 PC+ Sbjct: 125 PCL 127
>GLRX1_SYNY3 (P74593) Probable glutaredoxin slr1562| Length = 109 Score = 29.6 bits (65), Expect = 7.1 Identities = 24/83 (28%), Positives = 38/83 (45%) Frame = -1 Query: 503 VVIFGMSSCCMCHTVTSLLRDLGANPMVVELDEDPRGKEMEKALVRLLGRNPAVPVVFIG 324 V I+ +C C LL G + ++D D + ++ A R GR VP +F+ Sbjct: 23 VEIYTWQTCPFCIRAKLLLWWKGVKFIEYKIDGDDQARQAMAA--RAEGRR-TVPQIFVN 79 Query: 323 GRLAGCTDKVMSLHLGGKLVPLL 255 + G D++ L G+L PLL Sbjct: 80 DQGIGGCDQLYGLDSRGQLDPLL 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,423,776 Number of Sequences: 219361 Number of extensions: 1305247 Number of successful extensions: 4848 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4835 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
