ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24o22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197787.1| Oryza sativa (japonica cultivar-group) unknown ... 182 4e-43
2dbj|AK103864.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 4e-43
3gb|AY104569.1| Zea mays PCO121831 mRNA sequence 161 1e-36
4gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 gen... 115 7e-23
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 115 7e-23
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 115 7e-23
7gb|AC161586.5| Mus musculus BAC clone RP24-457J18 from chromosom... 42 0.85
8gb|AY258628.1| Felis catus activin beta A subunit precursor, mRN... 42 0.85
9ref|XM_540364.2| PREDICTED: Canis familiaris similar to Inhibin ... 42 0.85
10emb|CT010380.1| Mus musculus full open reading frame cDNA clone ... 42 0.85
11ref|NM_008380.1| Mus musculus inhibin beta-A (Inhba), mRNA 42 0.85
12emb|X69619.1|MMBETA M.musculus mRNA for inhibin beta-A subunit 42 0.85
13emb|X03266.1|SSINHBAR Porcine mRNA for inhibin beta (a)-subunit 42 0.85
14ref|NM_017128.1| Rattus norvegicus inhibin beta-A (Inhba), mRNA 42 0.85
15gb|BC053527.1| Mus musculus inhibin beta-A, mRNA (cDNA clone MGC... 42 0.85
16dbj|AK134991.1| Mus musculus adult male olfactory brain cDNA, RI... 42 0.85
17dbj|AK135474.1| Mus musculus 12 days embryo female mullerian duc... 42 0.85
18dbj|AB187512.1| Mesocricetus auratus inhba mRMA for inhibin/acti... 42 0.85
19ref|NM_001009856.1| Felis catus inhibin beta A (INHBA), mRNA 42 0.85
20ref|NM_214028.1| Sus scrofa inhibin beta-subunit (INHBA), mRNA 42 0.85
21gb|AC154742.2| Mus musculus BAC clone RP24-392F16 from 13, compl... 42 0.85
22gb|M37482.1|RATINHB Rat inhibin beta-A-subunit mRNA, complete cds 42 0.85
23gb|BT018639.1| Zea mays clone EL01N0504F02.d mRNA sequence 40 3.4
24gb|AY392044.1| Rattus norvegicus HN1-like (Hn1l) pseudogene, com... 40 3.4
25gb|AC073203.9| Homo sapiens BAC clone RP11-313M4 from 7, complet... 40 3.4
26gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen... 40 3.4
27ref|NG_004746.1| Rattus norvegicus HN1-like pseudogene (LOC49358... 40 3.4
28ref|XM_575898.1| PREDICTED: Rattus norvegicus LOC500537 (LOC5005... 40 3.4 
>ref|NM_197787.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0057L21.5), mRNA
          Length = 2787

 Score =  182 bits (92), Expect = 4e-43
 Identities = 196/231 (84%)
 Strand = Plus / Minus

                                                                        
Query: 19   gggcacttccggtggcgtagctcgaggttcctctggatacaagttgagcagaacaggtgg 78
            ||||| || |||||||| | ||| ||||||||||||||||| |  |||||||| | ||||
Sbjct: 2437 gggcatttgcggtggcggatctcaaggttcctctggatacatggcgagcagaataagtgg 2378

                                                                        
Query: 79   aagcatttggtgatcacaacctctttcggtcggtcaaagcacacaccgcacttgagaata 138
            ||||||||||||||||| ||||||||||| ||||| |||||||| || ||||||||||||
Sbjct: 2377 aagcatttggtgatcacgacctctttcggccggtcgaagcacaccccacacttgagaata 2318

                                                                        
Query: 139  gccttgcagtcttttatctcgtcctggagcttttggatagtagcctcttcgttctccgag 198
            |||||||| |||||||| || || |||||||| || ||||||| ||||||  | || |||
Sbjct: 2317 gccttgcattcttttatttcatcttggagcttctgtatagtagtctcttcagtttctgag 2258

                                                               
Query: 199  gtcagctccatgacttcattcttcacctcctnatattcttcctcgagcttt 249
            || |||||  ||||||| || |||||||| |  ||||||||||| ||||||
Sbjct: 2257 gttagctcactgacttcgtttttcacctcttcgtattcttcctcaagcttt 2207
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>dbj|AK103864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149F01, full
            insert sequence
          Length = 2875

 Score =  182 bits (92), Expect = 4e-43
 Identities = 196/231 (84%)
 Strand = Plus / Minus

                                                                        
Query: 19   gggcacttccggtggcgtagctcgaggttcctctggatacaagttgagcagaacaggtgg 78
            ||||| || |||||||| | ||| ||||||||||||||||| |  |||||||| | ||||
Sbjct: 2639 gggcatttgcggtggcggatctcaaggttcctctggatacatggcgagcagaataagtgg 2580

                                                                        
Query: 79   aagcatttggtgatcacaacctctttcggtcggtcaaagcacacaccgcacttgagaata 138
            ||||||||||||||||| ||||||||||| ||||| |||||||| || ||||||||||||
Sbjct: 2579 aagcatttggtgatcacgacctctttcggccggtcgaagcacaccccacacttgagaata 2520

                                                                        
Query: 139  gccttgcagtcttttatctcgtcctggagcttttggatagtagcctcttcgttctccgag 198
            |||||||| |||||||| || || |||||||| || ||||||| ||||||  | || |||
Sbjct: 2519 gccttgcattcttttatttcatcttggagcttctgtatagtagtctcttcagtttctgag 2460

                                                               
Query: 199  gtcagctccatgacttcattcttcacctcctnatattcttcctcgagcttt 249
            || |||||  ||||||| || |||||||| |  ||||||||||| ||||||
Sbjct: 2459 gttagctcactgacttcgtttttcacctcttcgtattcttcctcaagcttt 2409
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>gb|AY104569.1| Zea mays PCO121831 mRNA sequence
          Length = 741

 Score =  161 bits (81), Expect = 1e-36
 Identities = 176/208 (84%)
 Strand = Plus / Minus

                                                                       
Query: 28  cggtggcgtagctcgaggttcctctggatacaagttgagcagaacaggtggaagcatttg 87
           |||||||| | ||||||||| |||||||| ||    |||||||| |||||||| ||||||
Sbjct: 467 cggtggcgaatctcgaggtttctctggatgcatagcgagcagaataggtggaaacatttg 408

                                                                       
Query: 88  gtgatcacaacctctttcggtcggtcaaagcacacaccgcacttgagaatagccttgcag 147
           ||||||||||||||||| || ||||||||||| ||||| |||||||||||| ||||||| 
Sbjct: 407 gtgatcacaacctctttaggccggtcaaagcatacaccacacttgagaatacccttgcat 348

                                                                       
Query: 148 tcttttatctcgtcctggagcttttggatagtagcctcttcgttctccgaggtcagctcc 207
           |||||||| || ||||  || ||  ||| ||||| ||||||  |||| ||||||||||||
Sbjct: 347 tcttttatttcatcctcaagtttccggacagtagtctcttcagtctcagaggtcagctcc 288

                                       
Query: 208 atgacttcattcttcacctcctnatatt 235
           || |||||||| |||||||| | |||||
Sbjct: 287 ataacttcatttttcacctcttcatatt 260
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>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete
              sequence
          Length = 183046

 Score =  115 bits (58), Expect = 7e-23
 Identities = 129/153 (84%)
 Strand = Plus / Plus

                                                                          
Query: 97     acctctttcggtcggtcaaagcacacaccgcacttgagaatagccttgcagtcttttatc 156
              ||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| 
Sbjct: 132688 acctctttcggccggtcgaagcacaccccacacttgagaatagccttgcattcttttatt 132747

                                                                          
Query: 157    tcgtcctggagcttttggatagtagcctcttcgttctccgaggtcagctccatgacttca 216
              || || |||||||| || ||||||| ||||||  | || ||||| |||||  ||||||| 
Sbjct: 132748 tcatcttggagcttctgtatagtagtctcttcagtttctgaggttagctcactgacttcg 132807

                                               
Query: 217    ttcttcacctcctnatattcttcctcgagcttt 249
              || |||||||| |  ||||||||||| ||||||
Sbjct: 132808 tttttcacctcttcgtattcttcctcaagcttt 132840



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                          
Query: 19     gggcacttccggtggcgtagctcgaggttcctctggatacaagttgagcagaacaggtgg 78
              ||||| || |||||||| | ||| ||||||||||||||||| |  |||||||| | ||||
Sbjct: 132381 gggcatttgcggtggcggatctcaaggttcctctggatacatggcgagcagaataagtgg 132440

                                    
Query: 79     aagcatttggtgatcacaacct 100
              ||||||||||||||||| ||||
Sbjct: 132441 aagcatttggtgatcacgacct 132462
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  115 bits (58), Expect = 7e-23
 Identities = 129/153 (84%)
 Strand = Plus / Minus

                                                                            
Query: 97       acctctttcggtcggtcaaagcacacaccgcacttgagaatagccttgcagtcttttatc 156
                ||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| 
Sbjct: 21875633 acctctttcggccggtcgaagcacaccccacacttgagaatagccttgcattcttttatt 21875574

                                                                            
Query: 157      tcgtcctggagcttttggatagtagcctcttcgttctccgaggtcagctccatgacttca 216
                || || |||||||| || ||||||| ||||||  | || ||||| |||||  ||||||| 
Sbjct: 21875573 tcatcttggagcttctgtatagtagtctcttcagtttctgaggttagctcactgacttcg 21875514

                                                 
Query: 217      ttcttcacctcctnatattcttcctcgagcttt 249
                || |||||||| |  ||||||||||| ||||||
Sbjct: 21875513 tttttcacctcttcgtattcttcctcaagcttt 21875481



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                            
Query: 19       gggcacttccggtggcgtagctcgaggttcctctggatacaagttgagcagaacaggtgg 78
                ||||| || |||||||| | ||| ||||||||||||||||| |  |||||||| | ||||
Sbjct: 21875940 gggcatttgcggtggcggatctcaaggttcctctggatacatggcgagcagaataagtgg 21875881

                                      
Query: 79       aagcatttggtgatcacaacct 100
                ||||||||||||||||| ||||
Sbjct: 21875880 aagcatttggtgatcacgacct 21875859



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 45/52 (86%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                    
Query: 44       ggttcctctggatacaagttgagcagaacaggtggaagcatttggtgatcac 95
                ||||||||||||| || || |||||||| ||||  ||||||||||| |||||
Sbjct: 19039662 ggttcctctggatgcatgtcgagcagaagaggt-taagcatttggtaatcac 19039712
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  115 bits (58), Expect = 7e-23
 Identities = 129/153 (84%)
 Strand = Plus / Minus

                                                                            
Query: 97       acctctttcggtcggtcaaagcacacaccgcacttgagaatagccttgcagtcttttatc 156
                ||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| 
Sbjct: 21887296 acctctttcggccggtcgaagcacaccccacacttgagaatagccttgcattcttttatt 21887237

                                                                            
Query: 157      tcgtcctggagcttttggatagtagcctcttcgttctccgaggtcagctccatgacttca 216
                || || |||||||| || ||||||| ||||||  | || ||||| |||||  ||||||| 
Sbjct: 21887236 tcatcttggagcttctgtatagtagtctcttcagtttctgaggttagctcactgacttcg 21887177

                                                 
Query: 217      ttcttcacctcctnatattcttcctcgagcttt 249
                || |||||||| |  ||||||||||| ||||||
Sbjct: 21887176 tttttcacctcttcgtattcttcctcaagcttt 21887144



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                            
Query: 19       gggcacttccggtggcgtagctcgaggttcctctggatacaagttgagcagaacaggtgg 78
                ||||| || |||||||| | ||| ||||||||||||||||| |  |||||||| | ||||
Sbjct: 21887603 gggcatttgcggtggcggatctcaaggttcctctggatacatggcgagcagaataagtgg 21887544

                                      
Query: 79       aagcatttggtgatcacaacct 100
                ||||||||||||||||| ||||
Sbjct: 21887543 aagcatttggtgatcacgacct 21887522



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 45/52 (86%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                    
Query: 44       ggttcctctggatacaagttgagcagaacaggtggaagcatttggtgatcac 95
                ||||||||||||| || || |||||||| ||||  ||||||||||| |||||
Sbjct: 19050916 ggttcctctggatgcatgtcgagcagaagaggt-taagcatttggtaatcac 19050966
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>gb|AC161586.5| Mus musculus BAC clone RP24-457J18 from chromosome 13, complete sequence
          Length = 146936

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 191    tctccgaggtcagctccatgacttcattc 219
              ||||||||||| ||||||||| |||||||
Sbjct: 141477 tctccgaggtctgctccatgagttcattc 141449
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>gb|AY258628.1| Felis catus activin beta A subunit precursor, mRNA, complete cds
          Length = 1275

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 367 tctccgaggtctgctccatgagttcattc 339
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>ref|XM_540364.2| PREDICTED: Canis familiaris similar to Inhibin beta A chain
           precursor (Activin beta-A chain) (Erythroid
           differentiation protein) (EDF) (LOC483245), mRNA
          Length = 1275

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 367 tctccgaggtctgctccatgagttcattc 339
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>emb|CT010380.1| Mus musculus full open reading frame cDNA clone RZPDo836D0753D for
           gene Inhba, Inhibin beta-A; complete cds, incl.
           stopcodon
          Length = 1275

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 367 tctccgaggtctgctccatgagttcattc 339
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>ref|NM_008380.1| Mus musculus inhibin beta-A (Inhba), mRNA
          Length = 1529

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 539 tctccgaggtctgctccatgagttcattc 511
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>emb|X69619.1|MMBETA M.musculus mRNA for inhibin beta-A subunit
          Length = 1529

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 539 tctccgaggtctgctccatgagttcattc 511
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>emb|X03266.1|SSINHBAR Porcine mRNA for inhibin beta (a)-subunit
          Length = 3573

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 400 tctccgaggtctgctccatgagttcattc 372
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>ref|NM_017128.1| Rattus norvegicus inhibin beta-A (Inhba), mRNA
          Length = 1543

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 529 tctccgaggtctgctccatgagttcattc 501
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>gb|BC053527.1| Mus musculus inhibin beta-A, mRNA (cDNA clone MGC:58937
           IMAGE:6528822), complete cds
          Length = 1589

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 532 tctccgaggtctgctccatgagttcattc 504
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>dbj|AK134991.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430537K11 product:inhibin
           beta-A, full insert sequence
          Length = 1957

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 990 tctccgaggtctgctccatgagttcattc 962
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>dbj|AK135474.1| Mus musculus 12 days embryo female mullerian duct includes
           surrounding region cDNA, RIKEN full-length enriched
           library, clone:6820426N15 product:inhibin beta-A, full
           insert sequence
          Length = 1410

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 371 tctccgaggtctgctccatgagttcattc 343
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>dbj|AB187512.1| Mesocricetus auratus inhba mRMA for inhibin/activin beta A subunit,
           partial cds
          Length = 1336

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 331 tctccgaggtctgctccatgagttcattc 303
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>ref|NM_001009856.1| Felis catus inhibin beta A (INHBA), mRNA
          Length = 1275

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 367 tctccgaggtctgctccatgagttcattc 339
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>ref|NM_214028.1| Sus scrofa inhibin beta-subunit (INHBA), mRNA
          Length = 3573

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 400 tctccgaggtctgctccatgagttcattc 372
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>gb|AC154742.2| Mus musculus BAC clone RP24-392F16 from 13, complete sequence
          Length = 129749

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 191   tctccgaggtcagctccatgacttcattc 219
             ||||||||||| ||||||||| |||||||
Sbjct: 26449 tctccgaggtctgctccatgagttcattc 26421
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>gb|M37482.1|RATINHB Rat inhibin beta-A-subunit mRNA, complete cds
          Length = 1543

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 tctccgaggtcagctccatgacttcattc 219
           ||||||||||| ||||||||| |||||||
Sbjct: 529 tctccgaggtctgctccatgagttcattc 501
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>gb|BT018639.1| Zea mays clone EL01N0504F02.d mRNA sequence
          Length = 1703

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 66   gcagaacaggtggaagcatttggtgatcacaacctctttc 105
            |||||| || ||| |||||||||  |||||||||||||||
Sbjct: 1171 gcagaagagatggtagcatttggcaatcacaacctctttc 1132
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>gb|AY392044.1| Rattus norvegicus HN1-like (Hn1l) pseudogene, complete sequence
          Length = 2819

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   aggtggaagcatttggtgat 92
            ||||||||||||||||||||
Sbjct: 1059 aggtggaagcatttggtgat 1040
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>gb|AC073203.9| Homo sapiens BAC clone RP11-313M4 from 7, complete sequence
          Length = 150227

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   agctccatgacttcattctt 221
             ||||||||||||||||||||
Sbjct: 22809 agctccatgacttcattctt 22828
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>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
             sequence
          Length = 151991

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 45/52 (86%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                 
Query: 44    ggttcctctggatacaagttgagcagaacaggtggaagcatttggtgatcac 95
             ||||||||||||| || || |||||||| ||||  ||||||||||| |||||
Sbjct: 39002 ggttcctctggatgcatgtcgagcagaagaggt-taagcatttggtaatcac 38952
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>ref|NG_004746.1| Rattus norvegicus HN1-like pseudogene (LOC493584) on chromosome 1
          Length = 2819

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   aggtggaagcatttggtgat 92
            ||||||||||||||||||||
Sbjct: 1059 aggtggaagcatttggtgat 1040
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>ref|XM_575898.1| PREDICTED: Rattus norvegicus LOC500537 (LOC500537), mRNA
          Length = 1002

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  gaggttcctctggatacaag 61
           ||||||||||||||||||||
Sbjct: 519 gaggttcctctggatacaag 538


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,808,564
Number of Sequences: 3902068
Number of extensions: 1808564
Number of successful extensions: 29054
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29005
Number of HSP's gapped (non-prelim): 52
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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