>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score =  249 bits (637), Expect = 3e-66
 Identities = 123/141 (87%), Positives = 126/141 (89%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTGNITLRE 371
            LYK LAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKH++LSWTVWDRWTVTGNITLRE
Sbjct: 911  LYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRE 970

Query: 370  LLEWLKEKGLNAYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXX 191
            LLEWLKEKGLNAYSISCGTSLLYNSMFPRHK+RLDRKVVDVAREVAKMEVPSYRRHL   
Sbjct: 971  LLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVV 1030

Query: 190  XXXXXXXXXXXDIPLVSVYFR 128
                       DIPLVSVYFR
Sbjct: 1031 VACEDDDDNDVDIPLVSVYFR 1051

>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score =  249 bits (637), Expect = 3e-66
 Identities = 123/141 (87%), Positives = 126/141 (89%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTGNITLRE 371
            LYK LAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKH++LSWTVWDRWTVTGNITLRE
Sbjct: 911  LYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRE 970

Query: 370  LLEWLKEKGLNAYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXX 191
            LLEWLKEKGLNAYSISCGTSLLYNSMFPRHK+RLDRKVVDVAREVAKMEVPSYRRHL   
Sbjct: 971  LLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVV 1030

Query: 190  XXXXXXXXXXXDIPLVSVYFR 128
                       DIPLVSVYFR
Sbjct: 1031 VACEDDDDNDVDIPLVSVYFR 1051

>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score =  213 bits (542), Expect = 3e-55
 Identities = 101/141 (71%), Positives = 115/141 (81%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTGNITLRE 371
            LYKV+AG H VEDYRNTFANLA+PLFS+AEPVPPK +KHK+ SWTVWDRW+V GN+TL E
Sbjct: 913  LYKVIAGEHPVEDYRNTFANLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVQGNLTLAE 972

Query: 370  LLEWLKEKGLNAYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXX 191
            LL+W  +KGL AYSISCGTSLLYN+MF RHKDRL +KVVD+AREVAK++VP YRRHL   
Sbjct: 973  LLQWFADKGLTAYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIG 1032

Query: 190  XXXXXXXXXXXDIPLVSVYFR 128
                       DIPLVSVYFR
Sbjct: 1033 VACEDEDENDVDIPLVSVYFR 1053

>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)|
          Length = 205

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 52/121 (42%), Positives = 78/121 (64%), Gaps = 4/121 (3%)
 Frame = -1

Query: 550 LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSW-TVWDRWTVTGNITLR 374
           LYKV+ G   +E Y+N F NLA+P    +EP+     K+ +  +  +WDR+ + G+ITL+
Sbjct: 62  LYKVVDGKDDIEQYKNGFINLALPFIGFSEPIKSPEGKYNNKKFDQIWDRFELNGDITLQ 121

Query: 373 ELLE-WLKEKGLNAYSISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVPSYRRH 203
           ELL+ + KE+GL    +S G SLLY S FP  + KDRL  K+  + +EV+K EVPS+ ++
Sbjct: 122 ELLDHFEKEEGLTISMLSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKN 181

Query: 202 L 200
           L
Sbjct: 182 L 182

>UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)|
          Length = 442

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
 Frame = -1

Query: 550 LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTG------ 389
           LYKV+ G  ++E Y+N+F NLA+PLFS + P+ P+  +  D  WT+WDR+ V G      
Sbjct: 293 LYKVVQGHQQLESYKNSFINLALPLFSFSAPLAPECHQFYDQEWTLWDRFDVQGLQPSGE 352

Query: 388 NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVP 218
            +TL++ L++ K E  L    +S G S+LY+   P  + K+RLD+ + ++   V+K ++ 
Sbjct: 353 EMTLKQFLDYFKTEHKLEVIMLSQGVSMLYSVFMPASKLKERLDQPMTEIVSCVSKQKLG 412

Query: 217 SYRRHL 200
            + + L
Sbjct: 413 HHVKSL 418

>UBE1X_MOUSE (P31253) Ubiquitin-activating enzyme E1 X (Fragment)|
          Length = 450

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 42/125 (33%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
 Frame = -1

Query: 550 LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTG------ 389
           LYKV+ G  +++ Y+N F NLA+P F  +EP+     ++ +  WT+WDR+ V G      
Sbjct: 295 LYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGVQPNGE 354

Query: 388 NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVP 218
            +TL++ L++ K E  L    +S G S+LY+   P  + K+RLD+ + ++   V+K ++ 
Sbjct: 355 EMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLG 414

Query: 217 SYRRH 203
            + RH
Sbjct: 415 RHVRH 419

>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1|
          Length = 1024

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPV-PPKTIKHKDLSWTVWDRWTVTGNITLR 374
            LYK++     +E Y+N F NLA+P F  +EP+  PK   +      +WDR+ + G+I L 
Sbjct: 881  LYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLS 940

Query: 373  ELLE-WLKEKGLNAYSISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVPSY 212
            +L+E + K++GL    +S G SLLY S FP  + K+RL+  +  + + V K ++P++
Sbjct: 941  DLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAH 997

>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1|
          Length = 1058

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTG------ 389
            LYKV+ G  +++ Y+N F NLA+P F  +EP+     ++ +  WT+WDR+ V G      
Sbjct: 909  LYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGE 968

Query: 388  NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVP 218
             +TL++ L++ K E  L    +S G S+LY+   P  + K+RLD+ + ++   V+K ++ 
Sbjct: 969  EMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLG 1028

Query: 217  SYRRHL 200
             + R L
Sbjct: 1029 RHVRAL 1034

>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)|
          Length = 1058

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTG------ 389
            LYKV+ G  +++ Y+N F NLA+P F  +EP+     ++ +  WT+WDR+ V G      
Sbjct: 909  LYKVVQGHRQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGE 968

Query: 388  NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVP 218
             +TL++ L++ K E  L    +S G S+LY+   P  + K+RLD+ + ++   V+K ++ 
Sbjct: 969  EMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLG 1028

Query: 217  SYRRHL 200
             + R L
Sbjct: 1029 RHVRAL 1034

>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport|
            protein 3)
          Length = 1012

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 43/122 (35%), Positives = 76/122 (62%), Gaps = 5/122 (4%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPV--PPKTIKHKDLSWTVWDRWTVTGNITL 377
            L K++ G  K+E+Y+N F NLAI LF+ ++P+  P   +  K++   +WDR+ +  + TL
Sbjct: 870  LVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEID-KIWDRYNLP-DCTL 927

Query: 376  RELLEWL-KEKGLNAYSISCGTSLLYNSMFPRHK--DRLDRKVVDVAREVAKMEVPSYRR 206
            +EL+++  KE+GL    +S G SLLY +  P  K  +RL  K+ ++  ++ K ++  +R+
Sbjct: 928  QELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPFRK 987

Query: 205  HL 200
            HL
Sbjct: 988  HL 989

>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1|
          Length = 1058

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTG------ 389
            LYKV+ G   ++ Y+N F NLA+P F  +EP+     ++ +  WT+WDR+ V G      
Sbjct: 909  LYKVVQGHRHLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGE 968

Query: 388  NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVP 218
             +TL++ L++ K E  L    +S G S+LY+   P  + K+RLD+ + ++   V+K ++ 
Sbjct: 969  EMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLG 1028

Query: 217  SYRRHL 200
             + R L
Sbjct: 1029 RHVRAL 1034

>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)|
          Length = 1011

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -1

Query: 550  LYKVLAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHKDLSWTVWDRWTVTG---NIT 380
            LYKV++G      +R+++ +LA        P  P       L WT WDR  V       T
Sbjct: 867  LYKVVSGPRPRSAFRHSYLHLAENYLIRYMPFAPAIQTFHHLKWTSWDRLKVPAGQPERT 926

Query: 379  LRELLEWLKEK-GLNAYSISCGTSLLY 302
            L  LL  L+E+ GL    +  G++LLY
Sbjct: 927  LESLLAHLQEQHGLRVRILLHGSALLY 953

>UTY_PANTR (Q6B4Z3) Ubiquitously transcribed Y chromosome tetratricopeptide|
            repeat protein (Ubiquitously transcribed TPR protein on
            the Y chromosome)
          Length = 1079

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 306  SSDVPHDMLYAFNPFSLSHSRSSRNVMLPVTVHRSQTVHDKSLCLMVLGGTGSAIE---- 473
            S + PH  L+  N   L +S+SS  V LP+  HRS +    S+ + +   +   ++    
Sbjct: 790  SLNSPHSGLHTVNGEGLGNSQSSTKVDLPLVSHRSTSQIIPSMSVSICPSSTEVLKACRN 849

Query: 474  --KRGIARFANVLR*SSTLCPPAR 539
              K G++    +L      CPP R
Sbjct: 850  PGKNGLSNSCILL----DKCPPPR 869

>Y062_METJA (Q60369) Hypothetical protein MJ0062|
          Length = 207

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 376 RELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKDRLDRKVVDVAR 242
           +++LE+LK++ LN   + CGT  LY        ++  RKV ++ R
Sbjct: 19  KKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKR 63

>Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064|
          Length = 675

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 155 VNVIVIVILTGHHNIQMAPIRGHLHLGHLPGNIDHLPVQPILVPGEH 295
           VN  V+V+  GHH I   P   HL    + G + H+P  P+L   +H
Sbjct: 456 VNHAVVVLANGHH-ITDWPQTRHLPGYAVRGQVSHIPTNPVLGQLKH 501

>UTY_HUMAN (O14607) Ubiquitously transcribed Y chromosome tetratricopeptide|
            repeat protein (Ubiquitously transcribed TPR protein on
            the Y chromosome)
          Length = 1347

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +3

Query: 306  SSDVPHDMLYAFNPFSLSHSRSSRNVMLPVTVHRSQTVHDKSLCLMVLGGTGSAIE---- 473
            S + PH  L+  N   L  S+SS  V LP+  HRS +    S+ + +   +   ++    
Sbjct: 790  SLNSPHSGLHTVNGEGLGKSQSSTKVDLPLASHRSTSQILPSMSVSICPSSTEVLKACRN 849

Query: 474  --KRGIARFANVLR*SSTLCPPAR 539
              K G++    +L      CPP R
Sbjct: 850  PGKNGLSNSCILL----DKCPPPR 869

>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 654

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +2

Query: 116 GSLSTEVDRYEW-------DVNVIVIVILTGHHNIQMAPIRGHLHLG 235
           G+LST + R          D++++ + I  GH  + +A +RG  HLG
Sbjct: 249 GALSTVLTRQSVEEVGQASDIDILAVAIKGGHACVNLAMVRGGRHLG 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,045,106
Number of Sequences: 219361
Number of extensions: 1534163
Number of successful extensions: 5097
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5090
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)