ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24o18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX323449.13| Zebrafish DNA sequence from clone DKEYP-115E12 ... 42 0.64
2emb|BX088572.25| Zebrafish DNA sequence from clone CH211-246K16 ... 42 0.64
3gb|BC020894.1| Homo sapiens cDNA clone MGC:24147 IMAGE:4702473, ... 40 2.5
4emb|AL603889.5| Mouse DNA sequence from clone RP23-407M20 on chr... 40 2.5
5emb|CR854945.5| Zebrafish DNA sequence from clone DKEY-155H10 in... 40 2.5
6emb|CR385022.10| Zebrafish DNA sequence from clone CH211-63C12 i... 40 2.5
7gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, c... 40 2.5
8ref|NM_020193.3| Homo sapiens chromosome 11 open reading frame 3... 40 2.5
9emb|CR609463.1| full-length cDNA clone CS0DK006YE07 of HeLa cell... 40 2.5
10ref|XM_938134.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 2.5
11ref|XM_927542.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 2.5
12gb|AC005234.1| Homo sapiens BAC clone RP11-436H22 from 2, comple... 40 2.5
13gb|AF226047.1|AF226047 Homo sapiens GL002 (GL002) mRNA, complete... 40 2.5
14emb|BX647398.1|HSM807543 Homo sapiens mRNA; cDNA DKFZp686M14144 ... 40 2.5
15gb|AC123634.10| Mus musculus chromosome 3, clone RP24-434E24, co... 40 2.5
16dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 2.5
17dbj|AP003165.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 2.5
18dbj|AB042297.1| Homo sapiens PTS gene for 6-pyruvoyltetrahydropt... 40 2.5 
>emb|BX323449.13| Zebrafish DNA sequence from clone DKEYP-115E12 in linkage group 14,
              complete sequence
          Length = 179115

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     gcatacaagtttttaaaaaac 33
              |||||||||||||||||||||
Sbjct: 136171 gcatacaagtttttaaaaaac 136191
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>emb|BX088572.25| Zebrafish DNA sequence from clone CH211-246K16 in linkage group 14,
            complete sequence
          Length = 163812

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 13   gcatacaagtttttaaaaaac 33
            |||||||||||||||||||||
Sbjct: 3694 gcatacaagtttttaaaaaac 3674
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>gb|BC020894.1| Homo sapiens cDNA clone MGC:24147 IMAGE:4702473, complete cds
          Length = 1158

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  ttcagcatctgctgtttgaa 79
           ||||||||||||||||||||
Sbjct: 596 ttcagcatctgctgtttgaa 615
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>emb|AL603889.5| Mouse DNA sequence from clone RP23-407M20 on chromosome 11, complete
             sequence
          Length = 145052

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   ccatgcccaaatgcaaggag 171
             ||||||||||||||||||||
Sbjct: 25718 ccatgcccaaatgcaaggag 25737
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>emb|CR854945.5| Zebrafish DNA sequence from clone DKEY-155H10 in linkage group 13,
             complete sequence
          Length = 231490

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    gcatacaagtttttaaaaaa 32
             ||||||||||||||||||||
Sbjct: 86952 gcatacaagtttttaaaaaa 86971
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>emb|CR385022.10| Zebrafish DNA sequence from clone CH211-63C12 in linkage group 23,
              complete sequence
          Length = 163551

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ctcactgattcatcacatga 120
              ||||||||||||||||||||
Sbjct: 118151 ctcactgattcatcacatga 118170
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>gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, complete sequence
          Length = 167843

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    agtttttaaaaaacgtattc 39
             ||||||||||||||||||||
Sbjct: 28567 agtttttaaaaaacgtattc 28586
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>ref|NM_020193.3| Homo sapiens chromosome 11 open reading frame 30 (C11orf30), mRNA
          Length = 5518

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   catacaagtttttaaaaaac 33
            ||||||||||||||||||||
Sbjct: 4541 catacaagtttttaaaaaac 4522
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>emb|CR609463.1| full-length cDNA clone CS0DK006YE07 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1570

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 14  catacaagtttttaaaaaac 33
           ||||||||||||||||||||
Sbjct: 179 catacaagtttttaaaaaac 160
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>ref|XM_938134.1| PREDICTED: Homo sapiens hypothetical protein LOC649051 (LOC649051),
           mRNA
          Length = 1120

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  ttcagcatctgctgtttgaa 79
           ||||||||||||||||||||
Sbjct: 590 ttcagcatctgctgtttgaa 609
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>ref|XM_927542.1| PREDICTED: Homo sapiens hypothetical protein LOC644396 (LOC644396),
           mRNA
          Length = 1121

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  ttcagcatctgctgtttgaa 79
           ||||||||||||||||||||
Sbjct: 591 ttcagcatctgctgtttgaa 610
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>gb|AC005234.1| Homo sapiens BAC clone RP11-436H22 from 2, complete sequence
          Length = 190753

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    ccaaatgcaaggagaactgg 177
              ||||||||||||||||||||
Sbjct: 165919 ccaaatgcaaggagaactgg 165938
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>gb|AF226047.1|AF226047 Homo sapiens GL002 (GL002) mRNA, complete cds
          Length = 2064

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   catacaagtttttaaaaaac 33
            ||||||||||||||||||||
Sbjct: 1087 catacaagtttttaaaaaac 1068
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>emb|BX647398.1|HSM807543 Homo sapiens mRNA; cDNA DKFZp686M14144 (from clone DKFZp686M14144)
          Length = 4975

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   catacaagtttttaaaaaac 33
            ||||||||||||||||||||
Sbjct: 2636 catacaagtttttaaaaaac 2617
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>gb|AC123634.10| Mus musculus chromosome 3, clone RP24-434E24, complete sequence
          Length = 176948

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    caaacctaacctcactgatt 110
             ||||||||||||||||||||
Sbjct: 93261 caaacctaacctcactgatt 93242
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>dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-356J5, complete
              sequence
          Length = 165678

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ttcagcatctgctgtttgaa 79
              ||||||||||||||||||||
Sbjct: 112087 ttcagcatctgctgtttgaa 112106
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>dbj|AP003165.2| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-21E7, complete
             sequence
          Length = 112843

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    catacaagtttttaaaaaac 33
             ||||||||||||||||||||
Sbjct: 99856 catacaagtttttaaaaaac 99837
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>dbj|AB042297.1| Homo sapiens PTS gene for 6-pyruvoyltetrahydropterin synthase, complete
             cds
          Length = 85084

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ttcagcatctgctgtttgaa 79
             ||||||||||||||||||||
Sbjct: 52091 ttcagcatctgctgtttgaa 52110


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,745,989
Number of Sequences: 3902068
Number of extensions: 2745989
Number of successful extensions: 215432
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 215391
Number of HSP's gapped (non-prelim): 41
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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