ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25d17 |
|---|---|
| Clone Library Name | barley_pub |
>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 909 Score = 37.0 bits (84), Expect = 0.049 Identities = 20/48 (41%), Positives = 24/48 (50%) Frame = +3 Query: 144 PQTPSVPEARAPALALSHQSQG*CRPVCPSHWGPCSPSATT*RWLHSL 287 P+ PSVP PA Q+QG C+P P P P A T R H+L Sbjct: 826 PRAPSVPARPLPAKPALRQAQGTCKPNPPQKPLPADPLARTTRLTHAL 873
>YMU1_YEAST (Q12231) Transposon Ty1 protein A| Length = 440 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 15/77 (19%) Frame = -3 Query: 618 DYAAASVQLKREMETRPRS--VP--PREIETRPRSVPPAQ-----------PNQTDDSSW 484 +Y AS + + T P S VP P +P SVPP Q NQ + S W Sbjct: 42 EYDKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANPSGW 101 Query: 483 SLETLKQLVDFTPQEIT 433 S ++ +TP +++ Sbjct: 102 SFYGHPSMIPYTPYQMS 118
>CSN12_GIBZE (Q4IMN9) COP9 signalosome complex subunit 12| Length = 502 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +2 Query: 299 RSGLVQTSTLEMVPPTSSPQFERTTMKAMRMDAMQRLNSVAEIAWVISCGVKSTSCFRVS 478 R+G TL VPP PQ R+ A+ R + + I +KS++ + Sbjct: 15 RNGYKLAQTLSPVPPADDPQ---------RLMAVWRSTNSHSVKGDIKHFIKSSTAHKRK 65 Query: 479 RDHDESSVWL 508 DHDE++ W+ Sbjct: 66 LDHDETTGWV 75
>SRO9_YEAST (P25567) RNA-binding protein SRO9 (Suppressor of RHO3 protein 9)| Length = 434 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +1 Query: 256 QQRHDDGY-IRYDEEQERPRTNQYSGDGATNIQPPVRKNHHEG---NENG 393 QQ DG+ EE + T+Q +G QPP +NHH N NG Sbjct: 139 QQMKKDGFESAVGEEDSKDATSQENGQSTQQQQPPHHRNHHHSHHHNSNG 188
>G6PI_COREF (Q8FR39) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 542 Score = 31.6 bits (70), Expect = 2.0 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +2 Query: 494 SSVWLGWAGGTDLGLVSISLGGTDLG 571 S WLG+ G T +V+I +GG+DLG Sbjct: 133 SGAWLGYTGRTIKKVVNIGIGGSDLG 158
>TIM54_NEUCR (Q9C0Q7) Mitochondrial import inner membrane translocase subunit| tim-54 Length = 425 Score = 31.6 bits (70), Expect = 2.0 Identities = 22/67 (32%), Positives = 31/67 (46%) Frame = -3 Query: 612 AAASVQLKREMETRPRSVPPREIETRPRSVPPAQPNQTDDSSWSLETLKQLVDFTPQEIT 433 A A+ + E +P E +P+ P +P T S +S ETL L TPQE+T Sbjct: 201 APAAAEGSTSTEDKPAEEKKEEEAPKPKRPPQPKPYNTT-SDYSSETLHPL---TPQELT 256 Query: 432 QAISATE 412 A+ E Sbjct: 257 PAVPIRE 263
>YJZ6_YEAST (P47097) Transposon Ty1 protein A| Length = 440 Score = 31.2 bits (69), Expect = 2.7 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Frame = -3 Query: 627 RTYDYAAASVQLKREMETRPRS--VP--PREIETRPRSVPPAQ-----------PNQTDD 493 +T + AS + + T P S VP P +P SVPP Q NQ + Sbjct: 39 KTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANP 98 Query: 492 SSWSLETLKQLVDFTPQEIT 433 S WS ++ +TP +++ Sbjct: 99 SGWSFYGHPSMIPYTPYQMS 118
>YJZ7_YEAST (P47098) Transposon Ty1 protein B| Length = 1755 Score = 31.2 bits (69), Expect = 2.7 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Frame = -3 Query: 627 RTYDYAAASVQLKREMETRPRS--VP--PREIETRPRSVPPAQ-----------PNQTDD 493 +T + AS + + T P S VP P +P SVPP Q NQ + Sbjct: 39 KTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANP 98 Query: 492 SSWSLETLKQLVDFTPQEIT 433 S WS ++ +TP +++ Sbjct: 99 SGWSFYGHPSMIPYTPYQMS 118
>G6PI_DEIRA (Q9RTL8) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 541 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 482 DHDESSVWLGWAGGTDLGLVSISLGGTDLGLV 577 D S WLG+ G +V+I +GG+DLG V Sbjct: 129 DAVRSGEWLGYTGKPIKNIVNIGIGGSDLGPV 160
>YAIC_ECOLI (P0AAP1) Hypothetical protein yaiC| Length = 371 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Frame = -1 Query: 518 QPSLTKQTTHHGLWKL*SNSWISRRRRLPK------LSQPQSSAAAWHPFSLPSWWFFRT 357 +P LT Q H S +RR RLP+ + P +S HP P WW+ Sbjct: 21 EPPLTPQNEHQR-----SGLRFARRVRLPRAVGLAGMFLPIASTLVSHP--PPGWWWLVL 73 Query: 356 GGWMLVAP 333 GW V P Sbjct: 74 VGWAFVWP 81
>YAIC_ECOL6 (P0AAP2) Hypothetical protein yaiC| Length = 371 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Frame = -1 Query: 518 QPSLTKQTTHHGLWKL*SNSWISRRRRLPK------LSQPQSSAAAWHPFSLPSWWFFRT 357 +P LT Q H S +RR RLP+ + P +S HP P WW+ Sbjct: 21 EPPLTPQNEHQR-----SGLRFARRVRLPRAVGLAGMFLPIASTLVSHP--PPGWWWLVL 73 Query: 356 GGWMLVAP 333 GW V P Sbjct: 74 VGWAFVWP 81
>AXN1_BRARE (P57094) Axin-1 (Axis inhibition protein 1)| Length = 835 Score = 30.4 bits (67), Expect = 4.6 Identities = 24/90 (26%), Positives = 34/90 (37%) Frame = -2 Query: 397 GIHSHCLHGGSFELGAGCWWHHLQSTGLYEAAPVPHHNECNHRHVVADGEQGPQCEGQTG 218 G+ + + G L G H + EAA + HH +H H A G+ Q E + Sbjct: 506 GLPAGKIPGLMMPLSGGQGKHQARQGPKGEAAHLHHHKHIHHTHYAAAGKPKEQAEAEAA 565 Query: 217 RHQPWL*WLRANAGARASGTEGV*GYADGL 128 R W N G + YADG+ Sbjct: 566 RMHGGFAW---NTEQHHYGPKSR-NYADGM 591
>WA22_MYCTU (P0A686) WAG22 antigen precursor| Length = 914 Score = 30.4 bits (67), Expect = 4.6 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -2 Query: 340 WHHLQSTGL-YEAAPVPHHNECNHRHVVADGEQGPQCEGQTGRHQPWL*WLRANAGARAS 164 WH+LQ L + P R ++ +G+ G G G WL N GA A+ Sbjct: 508 WHNLQQDILSFINEPT---EALTGRPLIGNGDSGTPGTGDDGGAGGWLFGNGGNGGAGAA 564 Query: 163 GTEGV*GYADG 131 GT G G A G Sbjct: 565 GTNGSAGGAGG 575
>WA22_MYCBO (P0A687) WAG22 antigen precursor| Length = 914 Score = 30.4 bits (67), Expect = 4.6 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -2 Query: 340 WHHLQSTGL-YEAAPVPHHNECNHRHVVADGEQGPQCEGQTGRHQPWL*WLRANAGARAS 164 WH+LQ L + P R ++ +G+ G G G WL N GA A+ Sbjct: 508 WHNLQQDILSFINEPT---EALTGRPLIGNGDSGTPGTGDDGGAGGWLFGNGGNGGAGAA 564 Query: 163 GTEGV*GYADG 131 GT G G A G Sbjct: 565 GTNGSAGGAGG 575
>TACC2_MOUSE (Q9JJG0) Transforming acidic coiled-coil-containing protein 2| Length = 1035 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 Query: 609 AASVQLKREMETRPRSVPPREIETRPRSVPPAQPNQTD 496 +AS LKR +TRP S+ ++ +P PP + Q + Sbjct: 198 SASSTLKRTKKTRPPSLKKKQATKKPTETPPVKETQQE 235
>COX2_BETVU (P98012) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 260 Score = 30.0 bits (66), Expect = 6.0 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -2 Query: 112 HHDLFSLILITLVMFSWILKR 50 HHD+F +++ LV SWIL R Sbjct: 39 HHDIFFFLILILVFVSWILVR 59
>G6PI_AGABI (Q711G1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 551 Score = 29.6 bits (65), Expect = 7.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 494 SSVWLGWAGGTDLGLVSISLGGTDLGLVSI 583 S W G+ G T +V+I +GG+DLG V + Sbjct: 140 SGQWKGYTGKTINTIVNIGIGGSDLGPVMV 169
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 29.6 bits (65), Expect = 7.8 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = +3 Query: 144 PQTPSVPEARAPALALSHQSQG*CRPVCPSHWG--PCSPSATT 266 P P++PEA+ P + +H C P WG P +P T Sbjct: 732 PVDPALPEAQVPCMCRAHVEGPSCDRCKPGFWGLSPSNPEGCT 774
>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)| (Cut-like 2) Length = 1424 Score = 29.6 bits (65), Expect = 7.8 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -3 Query: 597 QLKREMETRPRSVPPREIETRPRSVPPAQPNQ 502 Q +REM+ + +++ E+ R RSVPP+ P + Sbjct: 637 QARREMQAQQQALLEMEVAPRGRSVPPSPPER 668
>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor| Length = 3718 Score = 29.6 bits (65), Expect = 7.8 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 144 PQTPSVPEARAPALALSHQSQG*CRPVCPSHWG 242 P P++PE +AP + +H C P +WG Sbjct: 738 PANPALPETQAPCMCRAHVEGPSCDRCKPGYWG 770
>DBP8_SCHPO (Q9HGM5) ATP-dependent RNA helicase dbp8 (EC 3.6.1.-)| Length = 453 Score = 29.6 bits (65), Expect = 7.8 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Frame = -3 Query: 492 SSWSLETLKQLVDFTPQEITQAISA--TEFSRCMASI------LIAF-MVVLSNWGLDVG 340 S W ++TLK L + P +I + + A E C+ AF + ++ W D Sbjct: 15 SPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPS 74 Query: 339 GTISRVLVCTRPLLFLI 289 G + +L TR L I Sbjct: 75 GIFALILTPTRELAIQI 91
>VINC_BRUMA (Q17162) Vinculin| Length = 993 Score = 29.6 bits (65), Expect = 7.8 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -3 Query: 600 VQLKREMETRPRSVPPREIETRPRSVPPAQPNQTDDS 490 + ++ ++ T PR PP EI PR PP + + +++ Sbjct: 762 IYIREDIPTPPRPPPPVEISPPPRPPPPPETDDEEET 798
>NHK1_DROME (Q7KRY6) Nucleosomal histone kinase 1 (EC 2.7.11.1) (Protein| baellchen) Length = 599 Score = 29.6 bits (65), Expect = 7.8 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = -3 Query: 612 AAASVQLKREMETRPRSVPPREIET-----RPRSVPPAQPNQTDDSSWSLETLKQLVDFT 448 A +S ++ ++T P+S P RE T +PRS P A P ++ L T ++F+ Sbjct: 425 ADSSPPSQKRVKTEPKSTP-RERATPKASPKPRSTPKASPKPQTPTAARLRTPNAKINFS 483 Query: 447 P 445 P Sbjct: 484 P 484
>TACC2_HUMAN (O95359) Transforming acidic coiled-coil-containing protein 2 (Anti| Zuai-1) (AZU-1) Length = 1026 Score = 29.6 bits (65), Expect = 7.8 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 612 AAASVQLKREMETRPRSVPPREIETRPRSVPPAQPNQTDDSSWSL 478 ++AS LKR + RP S+ ++ +P PP + Q + SL Sbjct: 196 SSASSTLKRTKKPRPPSLKKKQTTKKPTETPPVKETQQEPDEESL 240
>G6PI_KLULA (P12341) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 555 Score = 29.6 bits (65), Expect = 7.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 494 SSVWLGWAGGTDLGLVSISLGGTDLGLVSI 583 S W G+ G + +V+I +GG+DLG V + Sbjct: 148 SGAWKGYTGKSITDVVNIGIGGSDLGPVMV 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,541,891 Number of Sequences: 219361 Number of extensions: 2107451 Number of successful extensions: 6947 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 6439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6930 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
