Clone Information

BLAST Search Result

Clone Name	rbasd25d17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467153.1\| Oryza sativa (japonica cultivar-group), mRNA	72	2e-09
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	72	2e-09
3	dbj\|AP005072.3\| Oryza sativa (japonica cultivar-group) genomic D...	72	2e-09
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	9e-06
5	dbj\|AP003611.3\| Oryza sativa (japonica cultivar-group) genomic D...	60	9e-06
6	dbj\|AK068967.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	9e-06
7	ref\|NM_190723.1\| Oryza sativa (japonica cultivar-group), predic...	58	4e-05
8	dbj\|AK070341.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.035
9	emb\|BX255893.5\| Zebrafish DNA sequence from clone CH211-272H10 i...	44	0.55
10	gb\|AC121567.3\| Mus musculus BAC clone RP23-225D14 from 14, compl...	42	2.2
11	gb\|AC068702.7\| Homo sapiens BAC clone RP11-81H10 from 2, complet...	42	2.2
12	gb\|AE014295.3\| Bifidobacterium longum NCC2705, complete genome	42	2.2
13	emb\|AL731811.24\| Mouse DNA sequence from clone RP23-60A1 on chro...	42	2.2
14	gb\|BC051175.1\| Mus musculus cDNA sequence BC002230, mRNA (cDNA c...	40	8.6
15	gb\|AC116520.14\| Mus musculus chromosome 15, clone RP24-340J12, c...	40	8.6
16	gb\|AC124353.5\| Mus musculus BAC clone RP24-481I14 from chromosom...	40	8.6
17	gb\|BC025577.1\| Mus musculus cDNA sequence BC002230, mRNA (cDNA c...	40	8.6
18	gb\|CP000359.1\| Deinococcus geothermalis DSM 11300, complete genome	40	8.6
19	gb\|AF461036.1\| Paralithodes camtschaticus trypsin mRNA, complete...	40	8.6
20	gb\|AC166349.4\| Mus musculus BAC clone RP24-192I21 from chromosom...	40	8.6
21	gb\|BC002230.1\| Mus musculus cDNA sequence BC002230, mRNA (cDNA c...	40	8.6
22	ref\|XM_975496.1\| PREDICTED: Mus musculus cDNA sequence BC002230 ...	40	8.6
23	ref\|XM_922248.2\| PREDICTED: Mus musculus cDNA sequence BC002230,...	40	8.6
24	ref\|XM_912077.2\| PREDICTED: Mus musculus cDNA sequence BC002230,...	40	8.6
25	ref\|XM_901387.2\| PREDICTED: Mus musculus cDNA sequence BC002230,...	40	8.6
26	ref\|XM_484171.3\| PREDICTED: Mus musculus cDNA sequence BC002230,...	40	8.6
27	gb\|DQ160197.1\| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L...	40	8.6
28	gb\|AC140458.3\| Mus musculus BAC clone RP23-19C24 from chromosome...	40	8.6
29	emb\|AL662889.5\| Human DNA sequence from clone RP11-370K11 on chr...	40	8.6
30	emb\|AL391828.10\| Human DNA sequence from clone RP11-447A22 on ch...	40	8.6
31	emb\|X94147.2\|PFDHLVIIG Pseudomonas fluorescens dhl VII gene for ...	40	8.6
32	emb\|AL109619.1\|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BA...	40	8.6
33	emb\|AL161560.2\|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, ...	40	8.6
34	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	8.6
35	gb\|AC159633.2\| Mus musculus BAC clone RP24-159L15 from chromosom...	40	8.6
36	gb\|AC149053.3\| Mus musculus BAC clone RP24-502E20 from chromosom...	40	8.6
37	gb\|AC010890.9\| Homo sapiens BAC clone RP11-449L24 from 2, comple...	40	8.6
38	gb\|AC097713.3\| Homo sapiens BAC clone RP11-251I17 from 2, comple...	40	8.6
39	gb\|AC006063.1\|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Rosw...	40	8.6
40	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	8.6
41	emb\|BX005029.13\| Zebrafish DNA sequence from clone CH211-182D3 i...	40	8.6
42	emb\|AJ511304.1\|UBA511304 Uncultured bacterium partial dehI gene ...	40	8.6
43	emb\|AJ511303.1\|UBA511303 Uncultured bacterium partial dehI gene ...	40	8.6
44	emb\|AJ511302.1\|UBA511302 Uncultured bacterium partial dehI gene ...	40	8.6
45	emb\|AJ511300.1\|UBA511300 Uncultured bacterium partial dehI gene ...	40	8.6
46	emb\|AJ133461.1\|PPU133461 Pseudomonas putida (strain PP3) dehIcry...	40	8.6
47	emb\|AJ133459.1\|PSP133459 Pseudomonas sp. (strain K55) dehI gene,...	40	8.6
48	emb\|AJ133457.1\|PSP133457 Pseudomonas sp. (strain 17a) dehI gene,...	40	8.6
49	emb\|AL121595.5\|CNS01DRZ Human chromosome 14 DNA sequence BAC C-3...	40	8.6
50	emb\|X14429.1\|GDMYAL37 Gallus gallus MLC gene for embryonic myosi...	40	8.6
51	emb\|AL837522.8\| Mouse DNA sequence from clone RP23-264L10 on chr...	40	8.6
52	gb\|AC002343.1\|ATAC002343 Arabidopsis thaliana chromosome IV BAC ...	40	8.6

>ref|XM_467153.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 888

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                       
Query: 411 actctgtggctgagatagcttgggtaatctcctgcggcgtgaaatccacgagttgcttca 470
           ||||||| ||||| ||||| || |||||||| ||||| ||||||| || | | | |||||
Sbjct: 565 actctgtagctgatatagcctgtgtaatctcatgcggtgtgaaattcaagtgctccttca 506

                                                                       
Query: 471 gagtttccagagaccatgatgagtcgtctgtttggttaggctgggctggaggcacagatc 530
           ||||||| | |||||| | ||  |  |||| |||||||| ||||  |||||| |||||| 
Sbjct: 505 gagtttcaacagaccaagctgcattttctgcttggttagactggtttggaggaacagatt 446

                               
Query: 531 tgggtctcgtttctatctcc 550
           ||||||||||||| ||||||
Sbjct: 445 tgggtctcgtttccatctcc 426



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 115/145 (79%)
 Strand = Plus / Minus

                                                                       
Query: 239 gggtccctgttctccatcagcaacgacatgacgatggttacattcgttatgatgaggaac 298
           |||||| |||||||||||| ||| |  | ||| |||||||| |||||||| || || |||
Sbjct: 737 gggtccttgttctccatcaacaaagtgaagacaatggttacgttcgttataataagaaac 678

                                                                       
Query: 299 aggagcggcctcgtacaaaccagtactctggagatggtgccaccaacatccagcccccag 358
           || || || || || | ||| | |||||| | ||| || |||||||  ||||| ||||||
Sbjct: 677 agaagtggtcttgttccaactaatactcttgtgatagtaccaccaatgtccaggccccag 618

                                    
Query: 359 ttcgaaagaaccaccatgaaggcaa 383
           || ||||||||| |||  |||||||
Sbjct: 617 tttgaaagaaccgccagaaaggcaa 593



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 554 ggaggcacagatctgggtctcgtttccatctcc 586
           ||||| |||||| ||||||||||||||||||||
Sbjct: 458 ggaggaacagatttgggtctcgtttccatctcc 426

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                            
Query: 411      actctgtggctgagatagcttgggtaatctcctgcggcgtgaaatccacgagttgcttca 470
                ||||||| ||||| ||||| || |||||||| ||||| ||||||| || | | | |||||
Sbjct: 26719252 actctgtagctgatatagcctgtgtaatctcatgcggtgtgaaattcaagtgctccttca 26719193

                                                                            
Query: 471      gagtttccagagaccatgatgagtcgtctgtttggttaggctgggctggaggcacagatc 530
                ||||||| | |||||| | ||  |  |||| |||||||| ||||  |||||| |||||| 
Sbjct: 26719192 gagtttcaacagaccaagctgcattttctgcttggttagactggtttggaggaacagatt 26719133

                                    
Query: 531      tgggtctcgtttctatctcc 550
                ||||||||||||| ||||||
Sbjct: 26719132 tgggtctcgtttccatctcc 26719113



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 115/145 (79%)
 Strand = Plus / Minus

                                                                            
Query: 239      gggtccctgttctccatcagcaacgacatgacgatggttacattcgttatgatgaggaac 298
                |||||| |||||||||||| ||| |  | ||| |||||||| |||||||| || || |||
Sbjct: 26719424 gggtccttgttctccatcaacaaagtgaagacaatggttacgttcgttataataagaaac 26719365

                                                                            
Query: 299      aggagcggcctcgtacaaaccagtactctggagatggtgccaccaacatccagcccccag 358
                || || || || || | ||| | |||||| | ||| || |||||||  ||||| ||||||
Sbjct: 26719364 agaagtggtcttgttccaactaatactcttgtgatagtaccaccaatgtccaggccccag 26719305

                                         
Query: 359      ttcgaaagaaccaccatgaaggcaa 383
                || ||||||||| |||  |||||||
Sbjct: 26719304 tttgaaagaaccgccagaaaggcaa 26719280



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 554      ggaggcacagatctgggtctcgtttccatctcc 586
                ||||| |||||| ||||||||||||||||||||
Sbjct: 26719145 ggaggaacagatttgggtctcgtttccatctcc 26719113

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>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0708H12
          Length = 162381

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                         
Query: 411   actctgtggctgagatagcttgggtaatctcctgcggcgtgaaatccacgagttgcttca 470
             ||||||| ||||| ||||| || |||||||| ||||| ||||||| || | | | |||||
Sbjct: 81282 actctgtagctgatatagcctgtgtaatctcatgcggtgtgaaattcaagtgctccttca 81223

                                                                         
Query: 471   gagtttccagagaccatgatgagtcgtctgtttggttaggctgggctggaggcacagatc 530
             ||||||| | |||||| | ||  |  |||| |||||||| ||||  |||||| |||||| 
Sbjct: 81222 gagtttcaacagaccaagctgcattttctgcttggttagactggtttggaggaacagatt 81163

                                 
Query: 531   tgggtctcgtttctatctcc 550
             ||||||||||||| ||||||
Sbjct: 81162 tgggtctcgtttccatctcc 81143



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 115/145 (79%)
 Strand = Plus / Minus

                                                                         
Query: 239   gggtccctgttctccatcagcaacgacatgacgatggttacattcgttatgatgaggaac 298
             |||||| |||||||||||| ||| |  | ||| |||||||| |||||||| || || |||
Sbjct: 81454 gggtccttgttctccatcaacaaagtgaagacaatggttacgttcgttataataagaaac 81395

                                                                         
Query: 299   aggagcggcctcgtacaaaccagtactctggagatggtgccaccaacatccagcccccag 358
             || || || || || | ||| | |||||| | ||| || |||||||  ||||| ||||||
Sbjct: 81394 agaagtggtcttgttccaactaatactcttgtgatagtaccaccaatgtccaggccccag 81335

                                      
Query: 359   ttcgaaagaaccaccatgaaggcaa 383
             || ||||||||| |||  |||||||
Sbjct: 81334 tttgaaagaaccgccagaaaggcaa 81310



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 554   ggaggcacagatctgggtctcgtttccatctcc 586
             ||||| |||||| ||||||||||||||||||||
Sbjct: 81175 ggaggaacagatttgggtctcgtttccatctcc 81143

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 89       aatcaaagaaaacaaatcatgatgacagcgcaaatgctgaagtccatcag 138
                ||||||| |||||| ||||||||||||||||||| |||| |||| |||||
Sbjct: 37353739 aatcaaataaaacagatcatgatgacagcgcaaacgctgcagtctatcag 37353788



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 131/165 (79%)
 Strand = Plus / Plus

                                                                            
Query: 322      tactctggagatggtgccaccaacatccagcccccagttcgaaagaaccaccatgaaggc 381
                |||| ||| ||| ||||||||||| ||||||||||| || |||||||||||||  ||  |
Sbjct: 37353975 tactttggtgatagtgccaccaacgtccagcccccaatttgaaagaaccaccagaaaacc 37354034

                                                                            
Query: 382      aatgagaatggatgccatgcagcggctgaactctgtggctgagatagcttgggtaatctc 441
                |||||  | ||| ||||   | ||| |  ||||||| ||||| || || |||||||||||
Sbjct: 37354035 aatgatgacggaagccaaaaatcggttatactctgtagctgatatggcctgggtaatctc 37354094

                                                             
Query: 442      ctgcggcgtgaaatccacgagttgcttcagagtttccagagacca 486
                 || || | ||||| || || || |||||||||||||| ||||||
Sbjct: 37354095 atgtggtgcgaaattcaggatttccttcagagtttccacagacca 37354139



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 122/153 (79%)
 Strand = Plus / Plus

                                                                            
Query: 222      gtctgcccctcgcattggggtccctgttctccatcagcaacgacatgacgatggttacat 281
                |||| |||||| | ||||||||| |||||||||||| ||| |  | ||| |||||||  |
Sbjct: 37353875 gtctacccctcacgttggggtccttgttctccatcaacaaagtgaagacaatggttatgt 37353934

                                                                            
Query: 282      tcgttatgatgaggaacaggagcggcctcgtacaaaccagtactctggagatggtgccac 341
                ||||||  || || || || |  ||||| |||  ||| | |||| ||| ||| |||||||
Sbjct: 37353935 tcgttacaataagaaatagaattggccttgtagcaactaatactttggtgatagtgccac 37353994

                                                 
Query: 342      caacatccagcccccagttcgaaagaaccacca 374
                |||| ||||||||||| || |||||||||||||
Sbjct: 37353995 caacgtccagcccccaatttgaaagaaccacca 37354027

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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423B08
          Length = 151490

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 89    aatcaaagaaaacaaatcatgatgacagcgcaaatgctgaagtccatcag 138
             ||||||| |||||| ||||||||||||||||||| |||| |||| |||||
Sbjct: 65773 aatcaaataaaacagatcatgatgacagcgcaaacgctgcagtctatcag 65822



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 131/165 (79%)
 Strand = Plus / Plus

                                                                         
Query: 322   tactctggagatggtgccaccaacatccagcccccagttcgaaagaaccaccatgaaggc 381
             |||| ||| ||| ||||||||||| ||||||||||| || |||||||||||||  ||  |
Sbjct: 66009 tactttggtgatagtgccaccaacgtccagcccccaatttgaaagaaccaccagaaaacc 66068

                                                                         
Query: 382   aatgagaatggatgccatgcagcggctgaactctgtggctgagatagcttgggtaatctc 441
             |||||  | ||| ||||   | ||| |  ||||||| ||||| || || |||||||||||
Sbjct: 66069 aatgatgacggaagccaaaaatcggttatactctgtagctgatatggcctgggtaatctc 66128

                                                          
Query: 442   ctgcggcgtgaaatccacgagttgcttcagagtttccagagacca 486
              || || | ||||| || || || |||||||||||||| ||||||
Sbjct: 66129 atgtggtgcgaaattcaggatttccttcagagtttccacagacca 66173



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 122/153 (79%)
 Strand = Plus / Plus

                                                                         
Query: 222   gtctgcccctcgcattggggtccctgttctccatcagcaacgacatgacgatggttacat 281
             |||| |||||| | ||||||||| |||||||||||| ||| |  | ||| |||||||  |
Sbjct: 65909 gtctacccctcacgttggggtccttgttctccatcaacaaagtgaagacaatggttatgt 65968

                                                                         
Query: 282   tcgttatgatgaggaacaggagcggcctcgtacaaaccagtactctggagatggtgccac 341
             ||||||  || || || || |  ||||| |||  ||| | |||| ||| ||| |||||||
Sbjct: 65969 tcgttacaataagaaatagaattggccttgtagcaactaatactttggtgatagtgccac 66028

                                              
Query: 342   caacatccagcccccagttcgaaagaaccacca 374
             |||| ||||||||||| || |||||||||||||
Sbjct: 66029 caacgtccagcccccaatttgaaagaaccacca 66061

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>dbj|AK068967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002B20, full
           insert sequence
          Length = 1002

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 89  aatcaaagaaaacaaatcatgatgacagcgcaaatgctgaagtccatcag 138
           ||||||| |||||| ||||||||||||||||||| |||| |||| |||||
Sbjct: 938 aatcaaataaaacagatcatgatgacagcgcaaacgctgcagtctatcag 889



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 208/266 (78%), Gaps = 1/266 (0%)
 Strand = Plus / Minus

                                                                       
Query: 222 gtctgcccctcgcattggggtccctgttctccatcagcaacgacatgacgatggttacat 281
           |||| |||||| | ||||||||| |||||||||||| ||| |  | ||| |||||||  |
Sbjct: 802 gtctacccctcacgttggggtccttgttctccatcaacaaagtgaagacaatggttatgt 743

                                                                       
Query: 282 tcgttatgatgaggaacaggagcggcctcgta-caaaccagtactctggagatggtgcca 340
           ||||||  || || || || |  ||||| ||| ||||| | |||| ||| ||| ||||||
Sbjct: 742 tcgttacaataagaaatagaattggccttgtagcaaactaatactttggtgatagtgcca 683

                                                                       
Query: 341 ccaacatccagcccccagttcgaaagaaccaccatgaaggcaatgagaatggatgccatg 400
           ||||| ||||||||||| || |||||||||||||  ||  ||||||  | ||| ||||  
Sbjct: 682 ccaacgtccagcccccaatttgaaagaaccaccagaaaaccaatgatgacggaagccaaa 623

                                                                       
Query: 401 cagcggctgaactctgtggctgagatagcttgggtaatctcctgcggcgtgaaatccacg 460
            | ||| |  ||||||| ||||| || || ||||||||||| || || | ||||| || |
Sbjct: 622 aatcggttatactctgtagctgatatggcctgggtaatctcatgtggtgcgaaattcagg 563

                                     
Query: 461 agttgcttcagagtttccagagacca 486
           | || |||||||||||||| ||||||
Sbjct: 562 atttccttcagagtttccacagacca 537

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>ref|NM_190723.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 897

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 122/153 (79%)
 Strand = Plus / Minus

                                                                       
Query: 222 gtctgcccctcgcattggggtccctgttctccatcagcaacgacatgacgatggttacat 281
           |||| |||||| | ||||||||| |||||||||||| ||| |  | ||| |||||||  |
Sbjct: 763 gtctacccctcacgttggggtccttgttctccatcaacaaagtgaagacaatggttatgt 704

                                                                       
Query: 282 tcgttatgatgaggaacaggagcggcctcgtacaaaccagtactctggagatggtgccac 341
           ||||||  || || || || |  ||||| |||  ||| | |||| ||| ||| |||||||
Sbjct: 703 tcgttacaataagaaatagaattggccttgtagcaactaatactttggtgatagtgccac 644

                                            
Query: 342 caacatccagcccccagttcgaaagaaccacca 374
           |||| ||||||||||| || |||||||||||||
Sbjct: 643 caacgtccagcccccaatttgaaagaaccacca 611



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 131/165 (79%)
 Strand = Plus / Minus

                                                                       
Query: 322 tactctggagatggtgccaccaacatccagcccccagttcgaaagaaccaccatgaaggc 381
           |||| ||| ||| ||||||||||| ||||||||||| || |||||||||||||  ||  |
Sbjct: 663 tactttggtgatagtgccaccaacgtccagcccccaatttgaaagaaccaccagaaaacc 604

                                                                       
Query: 382 aatgagaatggatgccatgcagcggctgaactctgtggctgagatagcttgggtaatctc 441
           |||||  | ||| ||||   | ||| |  ||||||| ||||| || || |||||||||||
Sbjct: 603 aatgatgacggaagccaaaaatcggttatactctgtagctgatatggcctgggtaatctc 544

                                                        
Query: 442 ctgcggcgtgaaatccacgagttgcttcagagtttccagagacca 486
            || || | ||||| || || || |||||||||||||| ||||||
Sbjct: 543 atgtggtgcgaaattcaggatttccttcagagtttccacagacca 499



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 91  tcaaagaaaacaaatcatgatgacagcgcaaatgctgaagtccatcag 138
           ||||| |||||| ||||||||||||||||||| |||| |||| |||||
Sbjct: 897 tcaaataaaacagatcatgatgacagcgcaaacgctgcagtctatcag 850

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>dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L03, full
            insert sequence
          Length = 3713

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 554  ggaggcacagatctgggtctcgtttccatctccctc 589
            ||||||||| |||||| ||| |||||||||||||||
Sbjct: 2168 ggaggcacatatctggatcttgtttccatctccctc 2133



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                        
Query: 411  actctgtggctgagatagcttgggtaatctcctgcggcgtgaaatccacgagttgcttca 470
            ||||||| ||||| || || ||||||||| | || || | ||||| || || || |||||
Sbjct: 2275 actctgtagctgatatggcctgggtaatcccatgtggtgcgaaattcaggatttccttca 2216

                            
Query: 471  gagtttccagagacca 486
            ||||||||| ||||||
Sbjct: 2215 gagtttccacagacca 2200

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>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 374   atgaaggcaatgagaatggatg 395
             ||||||||||||||||||||||
Sbjct: 74562 atgaaggcaatgagaatggatg 74541

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>gb|AC121567.3| Mus musculus BAC clone RP23-225D14 from 14, complete sequence
          Length = 165586

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    aaactatctaaattctcttaa 57
             |||||||||||||||||||||
Sbjct: 60962 aaactatctaaattctcttaa 60982

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>gb|AC068702.7| Homo sapiens BAC clone RP11-81H10 from 2, complete sequence
          Length = 177519

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 34     tgcaaactatctaaattctct 54
              |||||||||||||||||||||
Sbjct: 130971 tgcaaactatctaaattctct 130951

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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 247     gttctccatcagcaacgacatgacgatgg 275
               |||||||| ||||||||||||| ||||||
Sbjct: 2135311 gttctccagcagcaacgacatggcgatgg 2135283

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>emb|AL731811.24| Mouse DNA sequence from clone RP23-60A1 on chromosome X, complete
              sequence
          Length = 167102

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 161    gccagaagcccgagctccagc 181
              |||||||||||||||||||||
Sbjct: 138666 gccagaagcccgagctccagc 138646

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>gb|BC051175.1| Mus musculus cDNA sequence BC002230, mRNA (cDNA clone IMAGE:6310583),
            partial cds
          Length = 3664

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 510  gctgggctggaggcacagatctgg 533
            |||||||||||||||||| |||||
Sbjct: 2648 gctgggctggaggcacagctctgg 2625

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>gb|AC116520.14| Mus musculus chromosome 15, clone RP24-340J12, complete sequence
          Length = 149118

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 509   ggctgggctggaggcacaga 528
             ||||||||||||||||||||
Sbjct: 79750 ggctgggctggaggcacaga 79731

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>gb|AC124353.5| Mus musculus BAC clone RP24-481I14 from chromosome 12, complete
             sequence
          Length = 152881

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ccagaagcccgagctccagc 181
             ||||||||||||||||||||
Sbjct: 70514 ccagaagcccgagctccagc 70495

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>gb|BC025577.1| Mus musculus cDNA sequence BC002230, mRNA (cDNA clone MGC:38228
            IMAGE:5323598), complete cds
          Length = 2358

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 510  gctgggctggaggcacagatctgg 533
            |||||||||||||||||| |||||
Sbjct: 1363 gctgggctggaggcacagctctgg 1340

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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 443     tgcggcgtgaaatccacgag 462
               ||||||||||||||||||||
Sbjct: 1165068 tgcggcgtgaaatccacgag 1165087

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>gb|AF461036.1| Paralithodes camtschaticus trypsin mRNA, complete cds
          Length = 942

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ttctccatcagcaacgacat 267
           ||||||||||||||||||||
Sbjct: 393 ttctccatcagcaacgacat 412

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>gb|AC166349.4| Mus musculus BAC clone RP24-192I21 from chromosome 12, complete sequence
          Length = 168529

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 510    gctgggctggaggcacagatctgg 533
              |||||||||||||||||| |||||
Sbjct: 101919 gctgggctggaggcacagctctgg 101942

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>gb|BC002230.1| Mus musculus cDNA sequence BC002230, mRNA (cDNA clone
           IMAGE:3491407), partial cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 510 gctgggctggaggcacagatctgg 533
           |||||||||||||||||| |||||
Sbjct: 452 gctgggctggaggcacagctctgg 429

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>ref|XM_975496.1| PREDICTED: Mus musculus cDNA sequence BC002230 (BC002230), mRNA
          Length = 1811

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 510 gctgggctggaggcacagatctgg 533
           |||||||||||||||||| |||||
Sbjct: 846 gctgggctggaggcacagctctgg 823

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>ref|XM_922248.2| PREDICTED: Mus musculus cDNA sequence BC002230, transcript variant
           4 (BC002230), mRNA
          Length = 1811

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 510 gctgggctggaggcacagatctgg 533
           |||||||||||||||||| |||||
Sbjct: 846 gctgggctggaggcacagctctgg 823

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>ref|XM_912077.2| PREDICTED: Mus musculus cDNA sequence BC002230, transcript variant 3
            (BC002230), mRNA
          Length = 3708

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 510  gctgggctggaggcacagatctgg 533
            |||||||||||||||||| |||||
Sbjct: 2743 gctgggctggaggcacagctctgg 2720

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>ref|XM_901387.2| PREDICTED: Mus musculus cDNA sequence BC002230, transcript variant
           2 (BC002230), mRNA
          Length = 1811

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 510 gctgggctggaggcacagatctgg 533
           |||||||||||||||||| |||||
Sbjct: 846 gctgggctggaggcacagctctgg 823

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>ref|XM_484171.3| PREDICTED: Mus musculus cDNA sequence BC002230, transcript variant 1
            (BC002230), mRNA
          Length = 3708

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 510  gctgggctggaggcacagatctgg 533
            |||||||||||||||||| |||||
Sbjct: 2743 gctgggctggaggcacagctctgg 2720

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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   gaaggcaatgagaatggatg 395
             ||||||||||||||||||||
Sbjct: 29378 gaaggcaatgagaatggatg 29359

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>gb|AC140458.3| Mus musculus BAC clone RP23-19C24 from chromosome 19, complete sequence
          Length = 186016

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   gatggtgccaccaacatcca 350
             ||||||||||||||||||||
Sbjct: 90513 gatggtgccaccaacatcca 90532

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>emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chromosome 1 Contains a
             fatty acid binding protein, muscle and heart
             (mammary-derived growth inhibitor) pseudogene and part of
             the AKT3 gene for  v-akt murine thymoma viral oncogene
             homolog 3 (protein kinase B, gamma), complete sequence
          Length = 127036

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   gagctccagcattagcccta 191
             ||||||||||||||||||||
Sbjct: 99090 gagctccagcattagcccta 99071

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>emb|AL391828.10| Human DNA sequence from clone RP11-447A22 on chromosome 6 Contains part
             of the HIVEP1 gene for human immunodeficiency virus type I
             enhancer binding protein 1, complete sequence
          Length = 70104

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 511   ctgggctggaggcacagatctggg 534
             ||||||| ||||||||||||||||
Sbjct: 54809 ctgggctagaggcacagatctggg 54786

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>emb|X94147.2|PFDHLVIIG Pseudomonas fluorescens dhl VII gene for 2-haloacid dehalogenase
          Length = 1670

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 gccggcctgtctgcccctcg 233
           ||||||||||||||||||||
Sbjct: 60  gccggcctgtctgcccctcg 41

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>emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial
             sequence (ESSA project)
          Length = 77567

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   cattcgttatgatgaggaac 298
             ||||||||||||||||||||
Sbjct: 18551 cattcgttatgatgaggaac 18570

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>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60
          Length = 196677

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    cattcgttatgatgaggaac 298
              ||||||||||||||||||||
Sbjct: 153523 cattcgttatgatgaggaac 153542

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     atctcctgcggcgtgaaatc 456
               ||||||||||||||||||||
Sbjct: 1365252 atctcctgcggcgtgaaatc 1365233

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>gb|AC159633.2| Mus musculus BAC clone RP24-159L15 from chromosome 12, complete
            sequence
          Length = 188757

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 510  gctgggctggaggcacagatctgg 533
            |||||||||||||||||| |||||
Sbjct: 4387 gctgggctggaggcacagctctgg 4410

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>gb|AC149053.3| Mus musculus BAC clone RP24-502E20 from chromosome 7, complete sequence
          Length = 221785

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    cctaagccatcagagccaag 207
              ||||||||||||||||||||
Sbjct: 114113 cctaagccatcagagccaag 114132

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>gb|AC010890.9| Homo sapiens BAC clone RP11-449L24 from 2, complete sequence
          Length = 62764

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 603   ttgctgctgcataatcataggtcc 626
             |||||||||||||| |||||||||
Sbjct: 17587 ttgctgctgcataaacataggtcc 17610

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>gb|AC097713.3| Homo sapiens BAC clone RP11-251I17 from 2, complete sequence
          Length = 173790

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   tcagagccaaggctgatgcc 216
             ||||||||||||||||||||
Sbjct: 61188 tcagagccaaggctgatgcc 61207

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>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 150001

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    gtccctgttctccatcagca 260
              ||||||||||||||||||||
Sbjct: 101096 gtccctgttctccatcagca 101115

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 289     gatgaggaacaggagcggcc 308
               ||||||||||||||||||||
Sbjct: 8210766 gatgaggaacaggagcggcc 8210747

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>emb|BX005029.13| Zebrafish DNA sequence from clone CH211-182D3 in linkage group 5,
             complete sequence
          Length = 128948

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tcaaagaaaacaaatcatga 110
             ||||||||||||||||||||
Sbjct: 70425 tcaaagaaaacaaatcatga 70444

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>emb|AJ511304.1|UBA511304 Uncultured bacterium partial dehI gene for putative halocarboxylic
           acid dehalogenase, clone AS-1o-5
          Length = 477

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 gccggcctgtctgcccctcg 233
           ||||||||||||||||||||
Sbjct: 178 gccggcctgtctgcccctcg 159

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>emb|AJ511303.1|UBA511303 Uncultured bacterium partial dehI gene for putative halocarboxylic
           acid dehalogenase, clone AS-1o-3
          Length = 477

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 gccggcctgtctgcccctcg 233
           ||||||||||||||||||||
Sbjct: 178 gccggcctgtctgcccctcg 159

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>emb|AJ511302.1|UBA511302 Uncultured bacterium partial dehI gene for putative halocarboxylic
           acid dehalogenase, clone AS-1o-2
          Length = 477

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 gccggcctgtctgcccctcg 233
           ||||||||||||||||||||
Sbjct: 178 gccggcctgtctgcccctcg 159

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>emb|AJ511300.1|UBA511300 Uncultured bacterium partial dehI gene for putative halocarboxylic
           acid dehalogenase, clone AS-gDNA-4
          Length = 477

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 gccggcctgtctgcccctcg 233
           ||||||||||||||||||||
Sbjct: 178 gccggcctgtctgcccctcg 159

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>emb|AJ133461.1|PPU133461 Pseudomonas putida (strain PP3) dehIcryptic gene, partial
          Length = 492

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 gccggcctgtctgcccctcg 233
           ||||||||||||||||||||
Sbjct: 193 gccggcctgtctgcccctcg 174

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>emb|AJ133459.1|PSP133459 Pseudomonas sp. (strain K55) dehI gene, partial
          Length = 477

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 gccggcctgtctgcccctcg 233
           ||||||||||||||||||||
Sbjct: 178 gccggcctgtctgcccctcg 159

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>emb|AJ133457.1|PSP133457 Pseudomonas sp. (strain 17a) dehI gene, partial
          Length = 477

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 gccggcctgtctgcccctcg 233
           ||||||||||||||||||||
Sbjct: 178 gccggcctgtctgcccctcg 159

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>emb|AL121595.5|CNS01DRZ Human chromosome 14 DNA sequence BAC C-3225F7 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171535

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    gaaggcaatgagaatggatg 395
              ||||||||||||||||||||
Sbjct: 129923 gaaggcaatgagaatggatg 129942

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>emb|X14429.1|GDMYAL37 Gallus gallus MLC gene for embryonic myosin alkali light chain
           exons 3-7
          Length = 2909

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 565 tctgggtctcgtttccatct 584
           ||||||||||||||||||||
Sbjct: 652 tctgggtctcgtttccatct 633

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>emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chromosome 4, complete
             sequence
          Length = 128976

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   ccagtactctggagatggtg 337
             ||||||||||||||||||||
Sbjct: 67121 ccagtactctggagatggtg 67102

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>gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete
             sequence
          Length = 116156

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   cattcgttatgatgaggaac 298
             ||||||||||||||||||||
Sbjct: 59089 cattcgttatgatgaggaac 59070


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,406,118
Number of Sequences: 3902068
Number of extensions: 5406118
Number of successful extensions: 124378
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124149
Number of HSP's gapped (non-prelim): 226
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result