ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24o15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DOIAD_STRSD (Q2MF22) 2-deoxy-scyllo-inosamine dehydrogenase (EC ... 31 3.3
2KAS2_STRCM (P41176) Putative polyketide beta-ketoacyl synthase 2... 30 4.3
3DP87_DICDI (Q04503) Prespore protein DP87 precursor 30 4.3
4DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein p... 30 5.6
5SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor 29 9.6

>DOIAD_STRSD (Q2MF22) 2-deoxy-scyllo-inosamine dehydrogenase (EC 1.1.1.-) (DOIA|
           dehydrogenase)
          Length = 339

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 380 ALHCALSDVGVGGGDHERVEGEYGIGYIL----QRRSAWYEPRGEAIASPRGSYFXAAAL 547
           ALH A+S VGV  G+   V G  GIG +L    ++R       GE +A  R     AA L
Sbjct: 148 ALH-AVSTVGVEPGERVAVLGAGGIGLMLMQVARQRGGVITTVGEPVAERRA---VAAQL 203

Query: 548 GTRTSARG 571
           G RT   G
Sbjct: 204 GARTVTTG 211



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>KAS2_STRCM (P41176) Putative polyketide beta-ketoacyl synthase 2 (EC 2.3.1.-)|
           (ORF 2)
          Length = 402

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 26/94 (27%), Positives = 31/94 (32%)
 Frame = +2

Query: 200 DGKXVYPGGGDGHLARKHXXNARQLREPVLAGEHGADXXXXXXXXXXXXXXDAEGHVGGG 379
           DG+   PGGG G +       A   R   + GE G                   G     
Sbjct: 222 DGRGYVPGGGRGVVPPLERAEAAPARGAEVYGEAGP-------LARLPAPHSGRGSTRAH 274

Query: 380 ALHCALSDVGVGGGDHERVEGEYGIGYILQRRSA 481
           A+  AL D G   GD  RV  + G  Y   R  A
Sbjct: 275 AIRTALDDAGTAPGDIRRVFADGGGRYPNDRAEA 308



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>DP87_DICDI (Q04503) Prespore protein DP87 precursor|
          Length = 555

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 252 CLRAR*PSPPPGYTSLPSTSSPQDRCTMMASRTTSR-PGIRFPCACSSAP 106
           C++AR P PPP  ++    SS  +   M+  +  S     RFPC C S P
Sbjct: 383 CIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPC-CPSHP 431



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>DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor|
          Length = 1204

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 458 YILQRRSAWYEPRGEAIASPRGSYFXAAALGTRTSARGIFSTPSYP 595
           Y       W+ P     ASP      +   G  TSA G FS+PSYP
Sbjct: 494 YTTTPSQTWWHPTTTTAASP-----SSPCGGFLTSASGTFSSPSYP 534



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>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor|
          Length = 307

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 234 PSPPPGYTSLPSTSSPQDRCTMMASRTTSRPGIRFPCACSS-APAGSP 94
           P+     T+ P+T+ P          TT++P    PC C S  P G P
Sbjct: 223 PTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPTTPKPCGCKSCGPGGEP 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,645,402
Number of Sequences: 219361
Number of extensions: 1571690
Number of successful extensions: 5094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5089
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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