ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25d10 |
|---|---|
| Clone Library Name | barley_pub |
>CAC1H_RAT (Q9EQ60) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2359 Score = 33.1 bits (74), Expect = 0.64 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Frame = -1 Query: 508 PGTQLHG-APGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPE------GRPHVRL 350 P + +HG PG +PR A R+ H V+ H H +H G P G RL Sbjct: 492 PSSTVHGQGPGRRPRRAGRRTASVHHLVYHHHHHHHHHYHFSHGGPRRPSPEPGAGDNRL 551 Query: 349 LRPAGLPADREAEERPGEVCRLHPLV--------PSRRAR 254 +R P+ P + +H + P RAR Sbjct: 552 VRACAPPSPPSPGHGPPDSESVHSIYHADCHVEGPQERAR 591
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 32.7 bits (73), Expect = 0.84 Identities = 37/124 (29%), Positives = 49/124 (39%), Gaps = 11/124 (8%) Frame = -1 Query: 574 SSSHQPR*MGEPPRDQVREGDAP---GTQLHGAPGPQPRHADVRSG--GEHGQVHEESAG 410 SSS Q R P R + D P G H GP RHA + G+HG+ G Sbjct: 3603 SSSSQKR---GPARHSYHDYDEPPEEGLWPHDEGGPG-RHASAKEHRHGDHGRHSGRHTG 3658 Query: 409 H------AHRHHQDVGLPEGRPHVRLLRPAGLPADREAEERPGEVCRLHPLVPSRRARRL 248 A H +D+G E RPH +P+ PA + +PG PSR + Sbjct: 3659 EEPGRRAAKPHARDLGRHEARPH---SQPSSAPA-MPKKGQPGYPSSAEYSQPSRASSAY 3714 Query: 247 EHGA 236 H + Sbjct: 3715 HHAS 3718
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Frame = -1 Query: 454 RSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHVRLLRPA-GLPADREAEERPGEVCRLHP 278 R G H H+E +H H D G H + + +A PGE Sbjct: 1303 RDGSRHPGFHQEDRA-SHGHSADSSRQSGTHHTESSSHGQAVSSHEQARSSPGE------ 1355 Query: 277 LVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASPVRET 158 HG+ HQ + S GHR +S VR++ Sbjct: 1356 ----------RHGSRHQQSADSSRHSGIGHRQASSAVRDS 1385 Score = 29.6 bits (65), Expect = 7.1 Identities = 29/125 (23%), Positives = 41/125 (32%) Frame = -1 Query: 532 DQVREGDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHVR 353 D R + HG+ Q +R G H + H+E H H D G H + Sbjct: 2903 DSERWSGSASRNHHGSAQEQ-----LRDGSRHPRSHQEDRA-GHGHSADSSRQSGTRHTQ 2956 Query: 352 LLRPAGLPADREAEERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPAS 173 G+ H S R HG+ HQ + S GH +S Sbjct: 2957 T-------------SSGGQAASSHEQARSSAGER--HGSHHQQSADSSRHSGIGHGQASS 3001 Query: 172 PVRET 158 VR++ Sbjct: 3002 AVRDS 3006 Score = 29.6 bits (65), Expect = 7.1 Identities = 29/125 (23%), Positives = 41/125 (32%) Frame = -1 Query: 532 DQVREGDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHVR 353 D R + HG+ Q +R G H + H+E H H D G H + Sbjct: 2579 DSERWSGSASRNHHGSAQEQ-----LRDGSRHPRSHQEDRA-GHGHSADSSRQSGTRHTQ 2632 Query: 352 LLRPAGLPADREAEERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPAS 173 G+ H S R HG+ HQ + S GH +S Sbjct: 2633 T-------------SSGGQAASSHEQARSSAGER--HGSHHQQSADSSRHSGIGHGQASS 2677 Query: 172 PVRET 158 VR++ Sbjct: 2678 AVRDS 2682 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = -1 Query: 466 HADVRSGGEHGQVHEES---AGHAHRHHQDVGLPEGRPHVRLLRPAGLPADREA--EERP 302 H R GG G HE+S +GH+ HH +GR + A RE EE+ Sbjct: 3761 HPGSRRGGRQGSYHEQSVDRSGHSGSHHSHT-TSQGRSDASHGQSGSRSASRETRNEEQS 3819 Query: 301 GEVCR 287 G+ R Sbjct: 3820 GDGSR 3824
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 31.6 bits (70), Expect = 1.9 Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 3/108 (2%) Frame = -1 Query: 559 PR*MGEPPRDQVREGDAPGTQLHGAPGPQPRHADVRSGG---EHGQVHEESAGHAHRHHQ 389 PR G PP D V + G P P A V+ G G EE H H Sbjct: 624 PRQQGHPPEDTVHHHRGSLKEEVGPESPGP--AGVKDGSRVKRGGSEEEEEQKGTHHHSL 681 Query: 388 DVGLPEGRPHVRLLRPAGLPADREAEERPGEVCRLHPLVPSRRARRLE 245 + E H R L D+E E+R GE ++ P R R E Sbjct: 682 EDEEDEEEGHGRSLS----QEDQEEEDRRGESAKVQ--APLRHHREEE 723
>PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Proline- and glutamine-rich protein) (PQR protein) Length = 261 Score = 31.6 bits (70), Expect = 1.9 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Frame = -1 Query: 562 QPR*MGEP-PRDQVREGDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHHQD 386 QP+ +P P+ Q++ P Q P PQP+ + S H H S H H H Sbjct: 166 QPQPQIQPQPQPQIQPQPQPQPQPQPQPQPQPQPQQLHSY-PHPHPHPYSHPHQHPHPHP 224 Query: 385 VGLPEGRPHVRLLRPAGLP 329 P PH L+ A P Sbjct: 225 HPHPHPHPHPYQLQHAHQP 243
>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1612 Score = 31.2 bits (69), Expect = 2.4 Identities = 28/122 (22%), Positives = 40/122 (32%), Gaps = 11/122 (9%) Frame = -1 Query: 487 APGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPE---GRPHVRLLRPA------- 338 AP P P +GG H ++ H G P+ RP+ L PA Sbjct: 62 APSPLPGALPPLNGGAPTPAHPSDPSPQYQAHSAAGTPQYPLPRPYSGSLLPASGTSPYG 121 Query: 337 -GLPADREAEERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASPVRE 161 P+ RP + P + HGA P ++ P ASP +E Sbjct: 122 PSTPSHAHPSSRPDSHAHVSPKKEPESHFAVNHGA---------PAYSVMREPQASPPKE 172 Query: 160 TR 155 + Sbjct: 173 AK 174
>G6PI_BLOPB (Q491V0) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 551 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -2 Query: 555 DKWGNPHGIKCAKETLPVLNYTEPLDLNHDMRMYDLV 445 D+WG G + A LP L Y + NHD Y L+ Sbjct: 507 DQWGVELGKQLADSILPELKYESMISKNHDSSTYGLI 543
>VID21_EMENI (Q5B4Q8) Chromatin modification-related protein vid21| Length = 1447 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = -1 Query: 517 GDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHVRLLRPA 338 G AP H P P +G +G + + G + Q+VG+ +GRPHV+ + + Sbjct: 1068 GRAPNAIPHN-PNAPPVSTSTANGLPNGISNPLANGMPNGLPQNVGVNQGRPHVQGMHGS 1126 Query: 337 GLPADREAEERP 302 G P + P Sbjct: 1127 GGPVNNHISPNP 1138
>MARK4_HUMAN (Q96L34) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)| (MAP/microtubule affinity-regulating kinase-like 1) Length = 752 Score = 31.2 bits (69), Expect = 2.4 Identities = 34/126 (26%), Positives = 42/126 (33%), Gaps = 4/126 (3%) Frame = -1 Query: 511 APGTQLHG--APGPQPRHADVRSGGEH--GQVHEESAGHAHRHHQDVGLPEGRPHVRLLR 344 APG L AP G H GQ S H R H D P P L Sbjct: 379 APGLALARVRAPSDTTNGTSSSKGTSHSKGQRSSSSTYHRQRRHSDFCGPSPAP----LH 434 Query: 343 PAGLPADREAEERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASPVR 164 P P GE +P R+A G+ + L SP ++ H P + + Sbjct: 435 PKRSPTST------GEAELKEERLPGRKASCSTAGSGSRGLPPSSPMVSSAHNPNKAEIP 488 Query: 163 ETRSSS 146 E R S Sbjct: 489 ERRKDS 494
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 12/65 (18%) Frame = -1 Query: 409 HAHRHHQDVGLPEGRPH------------VRLLRPAGLPADREAEERPGEVCRLHPLVPS 266 H H HH G GR V +RPA PA A R RL P + Sbjct: 2220 HHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVRPARAPALAHARARARAPARLLPELRL 2279 Query: 265 RRARR 251 RRARR Sbjct: 2280 RRARR 2284
>ONEC2_HUMAN (O95948) One cut domain family member 2 (Transcription factor| ONECUT-2) (OC-2) Length = 485 Score = 30.4 bits (67), Expect = 4.2 Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 4/107 (3%) Frame = -1 Query: 478 PQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHVRLLRPAGLPADREA----E 311 P P + V H H H H HHQ + + GLPA + Sbjct: 137 PLPPISTVSDKFHHPHPHHHPHHHHHHHHQRLSGNVSGSFTLMRDERGLPAMNNLYSPYK 196 Query: 310 ERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASP 170 E PG L PL + L G LH + + GH SP Sbjct: 197 EMPGMSQSLSPLAATPLGNGL--GGLHNAQQSLPNYGPPGHDKMLSP 241
>SURE_AQUAE (O67004) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 251 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Frame = +1 Query: 475 EVQGLRVIE-----YRERLLRALDPVGVPPFIWADVKRRNCHEEHG 597 E++G++V Y+ER+ + +DP G PF W + H E G Sbjct: 171 EIKGIKVTRQGKRAYKERVFKYIDPYG-KPFYWIAAEEFGWHAEEG 215
>MOAP1_MOUSE (Q9ERH6) Modulator of apoptosis 1 (MAP-1)| Length = 352 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -1 Query: 415 AGHAHRH-HQDVGLPEGRPHVRLLRPAGLPADREAEE 308 AG H+ +++GLPEG P LL+ L D+EAEE Sbjct: 302 AGAVHKSVRRELGLPEGSPAPGLLQLLTLIKDKEAEE 338
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 17/93 (18%) Frame = -1 Query: 568 SHQPR*MGEPPRDQVRE--GDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAH-- 401 +H+P GEP R + R GD P + P P+ R+ G E H H Sbjct: 867 THRPVAEGEPRRHRARRRPGDEPDDRPERRPRPRDATRPARAADGEGDDGERKRRHRHGP 926 Query: 400 -------------RHHQDVGLPEGRPHVRLLRP 341 + +Q G+P P++ RP Sbjct: 927 PAHDDRERRHRRRKENQGSGVPVSGPNLSTTRP 959
>MARK4_MOUSE (Q8CIP4) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)| Length = 752 Score = 30.4 bits (67), Expect = 4.2 Identities = 33/126 (26%), Positives = 41/126 (32%), Gaps = 4/126 (3%) Frame = -1 Query: 511 APGTQLHG--APGPQPRHADVRSGGEH--GQVHEESAGHAHRHHQDVGLPEGRPHVRLLR 344 APG L AP G H GQ S H R H D P P Sbjct: 379 APGLALARVRAPSDTTNGTSSSKGSSHNKGQRASSSTYHRQRRHSDFCGPSPAPLHPKRS 438 Query: 343 PAGLPADREAEERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASPVR 164 P EER +P R+A G+ + L SP ++ H P + + Sbjct: 439 PTSTGDTELKEER----------MPGRKASCSAVGSGSRGLPPSSPMVSSAHNPNKAEIP 488 Query: 163 ETRSSS 146 E R S Sbjct: 489 ERRKDS 494
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 30.0 bits (66), Expect = 5.4 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 17/93 (18%) Frame = -1 Query: 568 SHQPR*MGEPPRDQVRE--GDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAH-- 401 +H+P GEP R + R GD P + P P+ R+ G E H H Sbjct: 915 THRPVAEGEPRRHRARRRPGDEPDDRPERRPRPRDATRPARAADGEGDDGERKRRHRHGP 974 Query: 400 -------RHH------QDVGLPEGRPHVRLLRP 341 R H Q G+P P++ RP Sbjct: 975 PAHDDRERRHRRRKESQGSGVPMSGPNLSTTRP 1007
>OOXB1_RHIME (Q92XP5) Opine oxidase subunit B (EC 1.-.-.-) (Octopine oxidase| subunit B) Length = 368 Score = 30.0 bits (66), Expect = 5.4 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = -1 Query: 358 VRLLRPAGLPADREAEERPGE-VCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRP 182 +R++ P GLP EA E PG V H V +LH LE+ P A GH Sbjct: 306 LRIMSPDGLPIYEEAPEMPGAYVVTCHSGVTL--------ASLH--ALELGPALAEGHLG 355 Query: 181 PA-SPVRETR 155 PA +R TR Sbjct: 356 PAPRSMRSTR 365
>AREA_ASPNG (O13412) Nitrogen regulatory protein areA| Length = 882 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = -1 Query: 580 NFSSSHQPR*MGEPPRDQVREGDAPGTQLH--GAPGPQPRHAD 458 N S+S QPR M +DQ + +H G P PQP+H D Sbjct: 447 NLSASLQPRYMFNQNQDQSHHTGNHSSSMHSPGYPIPQPQHVD 489
>AKR1_CRYNE (Q5KP49) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 776 Score = 30.0 bits (66), Expect = 5.4 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = -1 Query: 547 GEPPRDQVREGDA----PGTQLHGAPGPQPRHADVRSGGEHGQVH 425 G P + EG+A PG +HG PQ RH D G HG +H Sbjct: 635 GPPGAEAGPEGNALLPPPGGHVHG---PQCRHGDHARGHSHGVLH 676
>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) Length = 525 Score = 30.0 bits (66), Expect = 5.4 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 15/84 (17%) Frame = -1 Query: 565 HQPR*MGEPPRDQVREGDAPGTQLHGAP---GPQP---------RHADVRSGGEHGQVHE 422 H+P G PP R+ HG P GP P +HA + G H Sbjct: 290 HKPHEHGPPPPPDERDHS------HGPPLPQGPPPLLPMSCSSCQHATFGTNGAQRHSHN 343 Query: 421 ESAG--HAHRHHQDVGLPEG-RPH 359 ++ H H+HH P G PH Sbjct: 344 NNSSDLHPHKHHSHEQHPHGHHPH 367
>CLCA_RAT (P08081) Clathrin light chain A (Lca)| Length = 248 Score = 29.6 bits (65), Expect = 7.1 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -1 Query: 526 VREGDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAG 410 + +G APG Q HG P P D G +G+ ++ES G Sbjct: 54 ILDGGAPGPQAHGEP---PGGPDAVDGVMNGEYYQESNG 89
>TCF8_RAT (Q62947) Transcription factor 8 (Zinc finger homeodomain| enhancer-binding protein) (Zfhep) Length = 1109 Score = 29.6 bits (65), Expect = 7.1 Identities = 27/94 (28%), Positives = 42/94 (44%) Frame = -2 Query: 576 SPLHISPDKWGNPHGIKCAKETLPVLNYTEPLDLNHDMRMYDLVASTARSMKKVPVTLID 397 SPL++S + NP G C E EPLDL S+ K L++ Sbjct: 684 SPLNLSSAR--NPQGYSCVSEGTQEEPQVEPLDL---------------SLPKQQGELLE 726 Query: 396 ITRMSDYRKDAHTSVYSVRQGYLLTAKQKNDPEK 295 + +S ++ SVYSV++ L + K +P+K Sbjct: 727 RSTVSSVYQN---SVYSVQEEPLNLSCAKKEPQK 757
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Frame = -1 Query: 490 GAPGPQPRHADVRSGGEHGQVHEESA---GHAHRHHQDVGLP 374 G PGP P GG +G H + GH H HH +G P Sbjct: 644 GVPGPGPG-----PGGMNGPPHPHMSPHHGHPHHHHNPMGGP 680
>NR4A3_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor| NOR-1/NOR-2) (Neuron-derived orphan receptor 1/2) Length = 628 Score = 29.6 bits (65), Expect = 7.1 Identities = 26/92 (28%), Positives = 33/92 (35%) Frame = -1 Query: 481 GPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHVRLLRPAGLPADREAEERP 302 GP+P + G EHG H H H HH P P P+G P D Sbjct: 83 GPRPL-IKMEEGREHGYHHHHHHHHHHHHHHQQQQPSIPP------PSG-PEDEVLPSTS 134 Query: 301 GEVCRLHPLVPSRRARRLEHGALHQDLLEISP 206 + P P+ + GAL D L +P Sbjct: 135 MYFKQSPPSTPTTPGFPPQAGALWDDELPSAP 166
>YDDI_BACSU (P96646) Hypothetical protein yddI| Length = 168 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -2 Query: 558 PDKWGNPHGIKCAKETLPVLNYTEPLDLNHDMRMYDL-VASTARSMKKVPVTLIDIT 391 P + H + E L + +Y++PLD +H++ + + VA+TA S+ V ++ T Sbjct: 93 PSRSDQKHTVSVQSELLSLESYSKPLDESHELFLNIVEVATTANSVTTNQVLIVQTT 149
>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2| Length = 902 Score = 29.6 bits (65), Expect = 7.1 Identities = 26/90 (28%), Positives = 30/90 (33%) Frame = -1 Query: 547 GEPPRDQVREGDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEG 368 GE P R P T AP P+P R G + +A A Q G P G Sbjct: 175 GEQPASAAR----PATAAPAAPAPRPGAPAARPGTTTTRPGTTTARPATTTAQRPGAPAG 230 Query: 367 RPHVRLLRPAGLPADREAEERPGEVCRLHP 278 R P A R+ PG R P Sbjct: 231 RGPAVAAEPDEDEAPRQIRRGPGGAARPAP 260
>LHX2_MOUSE (Q9Z0S2) LIM/homeobox protein Lhx2| Length = 406 Score = 29.6 bits (65), Expect = 7.1 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 17/119 (14%) Frame = -1 Query: 466 HADVRSGGEHGQVHEESAGHAHRHHQDVGLP---------EGRPHVRLLRPAGLPADREA 314 HADV + +SAG +GLP +GRP R + G AD A Sbjct: 183 HADVAAAAAAAAA-AKSAGLGSAGANPLGLPYYNGVGTVQKGRPRKR--KSPGPGADLAA 239 Query: 313 --------EERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASPVRE 161 E + R P S++ +R+ H L + +FA H P A +++ Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 298
>XG_HUMAN (P55808) Glycoprotein Xg precursor (Protein PBDX)| Length = 180 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/48 (29%), Positives = 19/48 (39%) Frame = -1 Query: 484 PGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHVRLLRP 341 P P+PR GG + H HH G PEG +++ P Sbjct: 99 PRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGNMVAKIVSP 146
>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)| Length = 428 Score = 29.6 bits (65), Expect = 7.1 Identities = 18/54 (33%), Positives = 20/54 (37%) Frame = -1 Query: 517 GDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHV 356 G PG LH P HA H H +A H H HH P PH+ Sbjct: 129 GTGPGGHLHPH---HPHHAH-----HHHHHHHHAAHHHHHHHPPQPPPPPPPHM 174
>SALA_DROSI (P21749) Protein spalt-accessory precursor| Length = 139 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/34 (44%), Positives = 16/34 (47%) Frame = -1 Query: 493 HGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHH 392 HG P P H GEH + H E GH H HH Sbjct: 107 HGNPHEYPEHH-----GEHHREHHEHHGH-HEHH 134
>MDCG_XANCP (Q8P4U3) Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)| (Holo-ACP synthase) Length = 213 Score = 29.3 bits (64), Expect = 9.3 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Frame = -1 Query: 376 PEGRPHVRLLRPAGLPA---DREAEERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISP 206 P +P ++ AG PA R+ E+PG+V PL P++ +R+ A D+ P Sbjct: 21 PGAQPRLQAWFAAGFPAVVARRDGAEQPGQVRLGVPLPPAQGKQRIALCAQVSDIARSVP 80 Query: 205 FFA----AGHRPP 179 A H PP Sbjct: 81 ALALPEVISHAPP 93
>JUN_SERCA (P54864) Transcription factor AP-1 (Proto-oncogene c-jun)| Length = 314 Score = 29.3 bits (64), Expect = 9.3 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Frame = -1 Query: 574 SSSHQPR*MGEPPRDQVREGDAPGTQLHGAPGPQPRHADVRSGGEHG-----QVHEESAG 410 +S+ QP G P + + T LH P P +A++ + + + S G Sbjct: 131 TSAAQPVTSGMAPVSSMAGSTSFNTSLHSEP---PVYANLSNFNPNALSSAPNYNANSMG 187 Query: 409 HAHRHHQDVGLPEGRPHVRLLR--PAGLPADREAEERPGEVCRLHPL 275 +A +HH + +P P ++ L+ P +P E PGE L P+ Sbjct: 188 YAPQHHINPQMPVQHPRLQALKEEPQTVP------EMPGETPPLSPI 228
>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2365 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Frame = -1 Query: 508 PGTQLHG-APGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRP 362 P + LHG P +PR A R+ H V+ H H HH G P Sbjct: 492 PSSTLHGQGPRRRPRRAGRRTASVHHLVYH----HHHHHHHHYHFSHGGP 537
>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor| Length = 1775 Score = 29.3 bits (64), Expect = 9.3 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = -1 Query: 508 PGTQ-LHGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRPHVRLLRPAGL 332 PG + L G PGP+ + S GE G+ +E+ +A + G P R L P G Sbjct: 175 PGLEGLSGMPGPRGYAGQLGSKGEKGEPAKENGDYA---KGEKGEPGWRGTAGLAGPQGF 231 Query: 331 PADR 320 P ++ Sbjct: 232 PGEK 235
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 29.3 bits (64), Expect = 9.3 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Frame = -1 Query: 544 EPPRDQVREGDAPGTQLHGAPGPQPRHADV-RSGGEHGQVHEESAGHAHRHHQDVGLPEG 368 EPP + + D G H + H+D R G H E A H +D+G E Sbjct: 3629 EPPEEGLWPHDEGGPGRHTSAKEHRHHSDHGRHSGRHAG-EEPGRRAAKPHARDMGRHEA 3687 Query: 367 RPH 359 RPH Sbjct: 3688 RPH 3690
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 29.3 bits (64), Expect = 9.3 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 506 GSVSFAHLIPWGFPHLSGLM*R 571 G V F ++PW +P+L G+M R Sbjct: 672 GRVMFNEILPWNYPYLEGIMVR 693
>LHX9_MOUSE (Q9WUH2) LIM/homeobox protein Lhx9| Length = 388 Score = 29.3 bits (64), Expect = 9.3 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = -1 Query: 280 PLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASPVRE 161 P PS++ +R+ H L + +FA H P A +++ Sbjct: 251 PYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 290
>LHX9_HUMAN (Q9NQ69) LIM/homeobox protein Lhx9| Length = 388 Score = 29.3 bits (64), Expect = 9.3 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = -1 Query: 280 PLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASPVRE 161 P PS++ +R+ H L + +FA H P A +++ Sbjct: 251 PYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 290
>RPOC_CORDI (Q6NJF6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1336 Score = 29.3 bits (64), Expect = 9.3 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 506 GSVSFAHLIPWGFPHLSGLM*R 571 G + F L+PW +P+L G+M R Sbjct: 672 GRIMFNELLPWNYPYLEGVMVR 693
>LHX2_HUMAN (P50458) LIM/homeobox protein Lhx2 (Homeobox protein LH-2)| Length = 406 Score = 29.3 bits (64), Expect = 9.3 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 17/119 (14%) Frame = -1 Query: 466 HADVRSGGEHGQVHEESAGHAHRHHQDVGLP---------EGRPHVRLLRPAGLPADREA 314 HADV + +SAG +GLP +GRP R + G AD A Sbjct: 183 HADVAAAAAAAAA-AKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKR--KSPGPGADLAA 239 Query: 313 --------EERPGEVCRLHPLVPSRRARRLEHGALHQDLLEISPFFAAGHRPPASPVRE 161 E + R P S++ +R+ H L + +FA H P A +++ Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 298
>DIG1_CAEEL (Q09165) Mesocentin precursor| Length = 13100 Score = 29.3 bits (64), Expect = 9.3 Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 12/122 (9%) Frame = -1 Query: 547 GEP--PRDQVREGDAPGTQLHGAPGPQ--PRHADVRSG------GEHGQV-HEESAGHAH 401 G+P P QV DA G ++ + GP P D+ G +G V +S G A Sbjct: 12057 GKPLGPAGQVLPTDASGNYIYPSIGPDGSPLPTDINGKPAYTVIGRYGDVLPTDSLGRAV 12116 Query: 400 RHHQDVGLPEGRPHVRLLRPAGLPADREAEERPGEVCR-LHPLVPSRRARRLEHGALHQD 224 V + GLP D+ P + R LH LVP+RR + H D Sbjct: 12117 NIDGSVVPTDDE---------GLPIDQYGVVLPTDTTRKLHTLVPTRRPSSFCYVTSHID 12167 Query: 223 LL 218 LL Sbjct: 12168 LL 12169
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/73 (28%), Positives = 29/73 (39%) Frame = -1 Query: 541 PPRDQVREGDAPGTQLHGAPGPQPRHADVRSGGEHGQVHEESAGHAHRHHQDVGLPEGRP 362 PP ++ G++ + G PG + + GE GQ E A D G P+G P Sbjct: 1208 PPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGAKGPQGDDG-PKGNP 1266 Query: 361 HVRLLRPAGLPAD 323 P G P D Sbjct: 1267 -----GPVGFPGD 1274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,850,585 Number of Sequences: 219361 Number of extensions: 1799274 Number of successful extensions: 6331 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 5729 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6247 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
