ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24o09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KSGA_COXBU (Q83AC2) Dimethyladenosine transferase (EC 2.1.1.-) (... 31 3.1
2WRK49_ARATH (Q9FHR7) Probable WRKY transcription factor 49 (WRKY... 30 5.4

>KSGA_COXBU (Q83AC2) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 255

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 612 TEHPLQIVRSLPSERSCPLLFSFF--IHCL 695
           T+ PL++V +LP   S PLLF  F  IHC+
Sbjct: 94  TDKPLRVVGNLPYNISTPLLFHLFSQIHCI 123



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>WRK49_ARATH (Q9FHR7) Probable WRKY transcription factor 49 (WRKY DNA-binding|
           protein 49)
          Length = 274

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 LHKHSVQSMNQRSETFHSSNTFQKGSIFN 592
           +HKH+ Q MN++S+T   S   Q G + N
Sbjct: 191 IHKHNAQDMNKKSQTQEESKEAQLGELTN 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,908,469
Number of Sequences: 219361
Number of extensions: 1865911
Number of successful extensions: 4742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4741
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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