ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24o09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468804.1| Oryza sativa (japonica cultivar-group), mRNA 163 1e-36
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 5e-17
3gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genom... 98 5e-17
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
5gb|AY110203.1| Zea mays CL23558_1 mRNA sequence 96 2e-16
6ref|XM_726171.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 46 0.15
7tpg|BK001664.1| TPA: TPA_exp: Plasmodium yoelii S22 sporozoite-e... 46 0.15
8gb|AC116871.6| Mus musculus chromosome 19, clone RP24-417P12, co... 44 0.61
9gb|AC112153.4| Mus musculus BAC clone RP24-93G11 from chromosome... 44 0.61
10ref|XM_647754.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 44 0.61
11emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.61
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
13dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
14dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
15gb|U29377.1| Caenorhabditis elegans cosmid K05F1, complete sequence 42 2.4
16ref|XM_672583.1| Plasmodium berghei strain ANKA hypothetical pro... 42 2.4
17ref|XM_783215.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.4
18gb|AC060835.7| Homo sapiens BAC clone RP11-785F11 from 4, comple... 42 2.4
19emb|AL355103.3|CNS05TCM Human chromosome 14 DNA sequence BAC R-6... 42 2.4
20emb|AL359234.4|CNS05TEL Human chromosome 14 DNA sequence BAC C-2... 42 2.4
21emb|AL807794.6| Mouse DNA sequence from clone RP23-192K24 on chr... 42 2.4
22ref|NM_179535.1| Arabidopsis thaliana DNA binding AT1G69325 mRNA... 40 9.5
23gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome 40 9.5
24gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome... 40 9.5
25gb|AC126555.3| Mus musculus BAC clone RP23-474A17 from chromosom... 40 9.5
26ref|XM_765284.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 9.5
27ref|XM_765257.1| Giardia lamblia ATCC 50803 Zn-dependent peptida... 40 9.5
28emb|AL607026.11| Human DNA sequence from clone RP11-498G22 on ch... 40 9.5
29emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chro... 40 9.5
30gb|AY267659.1| Bigelowiella natans PsbA maturation factor MBB1 m... 40 9.5
31gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, comp... 40 9.5
32gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.5
33emb|BX942826.8| Mouse DNA sequence from clone RP23-34P2 on chrom... 40 9.5
34gb|AC024072.5| Homo sapiens chromosome 10 clone RP11-267O2, comp... 40 9.5
35gb|AC153133.4| Mus musculus BAC clone RP24-389O11 from chromosom... 40 9.5
36dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
38gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10... 40 9.5
39gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BAC F23... 40 9.5
40gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome 40 9.5
41dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome 40 9.5
42dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
43emb|BX004792.8| Zebrafish DNA sequence from clone DKEY-1J19, com... 40 9.5
44gb|AY828165.1| Oryza sativa (japonica cultivar-group) clone noaC... 40 9.5
45gb|AY827965.1| Oryza sativa (japonica cultivar-group) clone noaC... 40 9.5
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.5
47emb|BX004789.7| Mouse DNA sequence from clone RP24-132K7 on chro... 40 9.5
48emb|BX294163.7| Zebrafish DNA sequence from clone DKEY-46D17 in ... 40 9.5
49gb|AF015464.1|AF015464 Plasmodium falciparum microsatellite 14F ... 40 9.5
50gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, comple... 40 9.5 
>ref|XM_468804.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2381

 Score =  163 bits (82), Expect = 1e-36
 Identities = 204/242 (84%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                        
Query: 370  ctgatgaatcccctgaccagcttactgggagaacaacgccaagagctgttctcatgaggt 429
            |||||||||||||| |||||||||| |||||| | || |||||||||||  |||| ||||
Sbjct: 1873 ctgatgaatcccctaaccagcttacggggagagctacaccaagagctgtcttcataaggt 1814

                                                                        
Query: 430  ttgcttctgttataagactgtttagcacttcataagtactctccaaaga-acagccggat 488
            ||||||| ||||| |||||||| | | ||||||| |||||||| |||||   |||| |||
Sbjct: 1813 ttgcttcggttatgagactgttcaacgcttcatacgtactctctaaagagtgagcc-gat 1755

                                                                        
Query: 489  ttgacatcatcataagccttcataagcactctgtgcagtctatgaaccaaagaagtgaga 548
            |||||||| ||| | ||||||||||||||  | ||||||||||| ||  | |||||||| 
Sbjct: 1754 ttgacatcctcaaaggccttcataagcacaatatgcagtctatgcactgacgaagtgagg 1695

                                                                        
Query: 549  cgttccatagtagcaacactttccaaaagggtagcattttcaactttcaaccttgaaaga 608
             |||||||||| ||||||||||||||||| | |||||||||| |||| | ||||| ||||
Sbjct: 1694 tgttccatagtggcaacactttccaaaagagcagcattttcagctttaacccttgcaaga 1635

              
Query: 609  tc 610
            ||
Sbjct: 1634 tc 1633



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 240  ttcaacataaagctctctttgaggatatccgcagcgaatataagtagctccaccatctcc 299
            ||||| |||||||| || ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 2024 ttcaatataaagctatccttgaggatatcagcagctaatattagtagctccaccatttcc 1965

             
Query: 300  a 300
            |
Sbjct: 1964 a 1964
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                            
Query: 370      ctgatgaatcccctgaccagcttactgggagaacaacgccaagagctgttctcatgaggt 429
                |||||||||||||| |||||||||| |||||| | || |||||||||||  |||| ||||
Sbjct: 17954944 ctgatgaatcccctaaccagcttacggggagagctacaccaagagctgtcttcataaggt 17954885

                                                                 
Query: 430      ttgcttctgttataagactgtttagcacttcataagtactctccaaaga 478
                ||||||| ||||| |||||||| | | ||||||| |||||||| |||||
Sbjct: 17954884 ttgcttcggttatgagactgttcaacgcttcatacgtactctctaaaga 17954836



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 505      ccttcataagcactctgtgcagtctatgaaccaaagaagtgagacgttccatagtagcaa 564
                |||||||||||||  | ||||||||||| ||  | ||||||||  |||||||||| ||||
Sbjct: 17954401 ccttcataagcacaatatgcagtctatgcactgacgaagtgaggtgttccatagtggcaa 17954342

                                               
Query: 565      cactttccaaaagggtagcattttcaacttt 595
                ||||||||||||| | |||||||||| ||||
Sbjct: 17954341 cactttccaaaagagcagcattttcagcttt 17954311



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 240      ttcaacataaagctctctttgaggatatccgcagcgaatataagtagctccaccatctcc 299
                ||||| |||||||| || ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 17955095 ttcaatataaagctatccttgaggatatcagcagctaatattagtagctccaccatttcc 17955036

                 
Query: 300      a 300
                |
Sbjct: 17955035 a 17955035
to top
>gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genomic sequence, complete
             sequence
          Length = 142896

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                         
Query: 370   ctgatgaatcccctgaccagcttactgggagaacaacgccaagagctgttctcatgaggt 429
             |||||||||||||| |||||||||| |||||| | || |||||||||||  |||| ||||
Sbjct: 67348 ctgatgaatcccctaaccagcttacggggagagctacaccaagagctgtcttcataaggt 67407

                                                              
Query: 430   ttgcttctgttataagactgtttagcacttcataagtactctccaaaga 478
             ||||||| ||||| |||||||| | | ||||||| |||||||| |||||
Sbjct: 67408 ttgcttcggttatgagactgttcaacgcttcatacgtactctctaaaga 67456



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                         
Query: 505   ccttcataagcactctgtgcagtctatgaaccaaagaagtgagacgttccatagtagcaa 564
             |||||||||||||  | ||||||||||| ||  | ||||||||  |||||||||| ||||
Sbjct: 67891 ccttcataagcacaatatgcagtctatgcactgacgaagtgaggtgttccatagtggcaa 67950

                                            
Query: 565   cactttccaaaagggtagcattttcaacttt 595
             ||||||||||||| | |||||||||| ||||
Sbjct: 67951 cactttccaaaagagcagcattttcagcttt 67981



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 240   ttcaacataaagctctctttgaggatatccgcagcgaatataagtagctccaccatctcc 299
             ||||| |||||||| || ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 67197 ttcaatataaagctatccttgaggatatcagcagctaatattagtagctccaccatttcc 67256

              
Query: 300   a 300
             |
Sbjct: 67257 a 67257
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                            
Query: 370      ctgatgaatcccctgaccagcttactgggagaacaacgccaagagctgttctcatgaggt 429
                |||||||||||||| |||||||||| |||||| | || |||||||||||  |||| ||||
Sbjct: 17948485 ctgatgaatcccctaaccagcttacggggagagctacaccaagagctgtcttcataaggt 17948426

                                                                 
Query: 430      ttgcttctgttataagactgtttagcacttcataagtactctccaaaga 478
                ||||||| ||||| |||||||| | | ||||||| |||||||| |||||
Sbjct: 17948425 ttgcttcggttatgagactgttcaacgcttcatacgtactctctaaaga 17948377



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 505      ccttcataagcactctgtgcagtctatgaaccaaagaagtgagacgttccatagtagcaa 564
                |||||||||||||  | ||||||||||| ||  | ||||||||  |||||||||| ||||
Sbjct: 17947942 ccttcataagcacaatatgcagtctatgcactgacgaagtgaggtgttccatagtggcaa 17947883

                                               
Query: 565      cactttccaaaagggtagcattttcaacttt 595
                ||||||||||||| | |||||||||| ||||
Sbjct: 17947882 cactttccaaaagagcagcattttcagcttt 17947852



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 240      ttcaacataaagctctctttgaggatatccgcagcgaatataagtagctccaccatctcc 299
                ||||| |||||||| || ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 17948636 ttcaatataaagctatccttgaggatatcagcagctaatattagtagctccaccatttcc 17948577

                 
Query: 300      a 300
                |
Sbjct: 17948576 a 17948576
to top
>gb|AY110203.1| Zea mays CL23558_1 mRNA sequence
          Length = 1062

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 119/140 (85%), Gaps = 2/140 (1%)
 Strand = Plus / Minus

                                                                       
Query: 370 ctgatgaatcccctgaccagcttactgggagaacaacgccaagagctgttctcatgaggt 429
           ||||||||||||| ||||||||||| || ||||| ||   |||||||||  |||| ||||
Sbjct: 607 ctgatgaatccccggaccagcttacaggaagaaccacattaagagctgtcttcataaggt 548

                                                                       
Query: 430 ttgcttctgttataagactgtttagcacttcataagtactctccaaagaa-cagccggat 488
           ||||||| |||||||||||||| ||| ||||| | ||||||||||||| | |||| | | 
Sbjct: 547 ttgcttcagttataagactgttgagcgcttcaaaggtactctccaaaggatcagctg-ac 489

                               
Query: 489 ttgacatcatcataagcctt 508
           |||| |||||||||||||||
Sbjct: 488 ttgatatcatcataagcctt 469



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 atttcttcaacataaagctctctttgaggatatccgcagcgaatataagtagctccacca 294
           ||||||||| || ||||||||| ||||| || || ||||| ||||| |||||||||||||
Sbjct: 760 atttcttcaccagaaagctctccttgagaatctcagcagccaatattagtagctccacca 701

                 
Query: 295 tctcca 300
           ||||||
Sbjct: 700 tctcca 695
to top
>ref|XM_726171.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03269)
            partial mRNA
          Length = 8085

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 431  tgcttctgttataagactgttta 453
            |||||||||||||||||||||||
Sbjct: 5529 tgcttctgttataagactgttta 5507
to top
>tpg|BK001664.1| TPA: TPA_exp: Plasmodium yoelii S22 sporozoite-expressed protein
            gene, complete cds
          Length = 9192

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 431  tgcttctgttataagactgttta 453
            |||||||||||||||||||||||
Sbjct: 6918 tgcttctgttataagactgttta 6896
to top
>gb|AC116871.6| Mus musculus chromosome 19, clone RP24-417P12, complete sequence
          Length = 161959

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 116   gtttgcagcagtttccacttcc 137
             ||||||||||||||||||||||
Sbjct: 23250 gtttgcagcagtttccacttcc 23271
to top
>gb|AC112153.4| Mus musculus BAC clone RP24-93G11 from chromosome 19, complete
            sequence
          Length = 180944

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 116  gtttgcagcagtttccacttcc 137
            ||||||||||||||||||||||
Sbjct: 2517 gtttgcagcagtttccacttcc 2496
to top
>ref|XM_647754.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (103.t00028)
           partial mRNA
          Length = 495

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 667 tattattttccttttttatccattgc 692
           |||| |||||||||||||||||||||
Sbjct: 494 tatttttttccttttttatccattgc 469
to top
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 392   tactgggagaacaacgccaagagctg 417
             |||||||| |||||||||||||||||
Sbjct: 17405 tactgggacaacaacgccaagagctg 17380
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 669      ttattttccttttttatccatt 690
                ||||||||||||||||||||||
Sbjct: 24299913 ttattttccttttttatccatt 24299934
to top
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 669   ttattttccttttttatccatt 690
             ||||||||||||||||||||||
Sbjct: 33106 ttattttccttttttatccatt 33127
to top
>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0453E05
          Length = 137364

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 669    ttattttccttttttatccatt 690
              ||||||||||||||||||||||
Sbjct: 111464 ttattttccttttttatccatt 111485
to top
>gb|U29377.1| Caenorhabditis elegans cosmid K05F1, complete sequence
          Length = 26275

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 220   tctgaatcctcaatcatttcttcaa 244
             |||||||||||||| ||||||||||
Sbjct: 24278 tctgaatcctcaattatttcttcaa 24302
to top
>ref|XM_672583.1| Plasmodium berghei strain ANKA hypothetical protein (PB000579.01.0)
            partial mRNA
          Length = 5685

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 433  cttctgttataagactgttta 453
            |||||||||||||||||||||
Sbjct: 4222 cttctgttataagactgttta 4202
to top
>ref|XM_783215.1| PREDICTED: Strongylocentrotus purpuratus similar to F-box and
            leucine-rich repeat protein 5 (LOC583300), mRNA
          Length = 2835

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 165  taagaaatcaactcaagcgga 185
            |||||||||||||||||||||
Sbjct: 2490 taagaaatcaactcaagcgga 2470
to top
>gb|AC060835.7| Homo sapiens BAC clone RP11-785F11 from 4, complete sequence
          Length = 160624

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 529    tatgaaccaaagaagtgagac 549
              |||||||||||||||||||||
Sbjct: 137520 tatgaaccaaagaagtgagac 137500
to top
>emb|AL355103.3|CNS05TCM Human chromosome 14 DNA sequence BAC R-624J12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173389

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 45     catgcaaaatcatcagtttgcaggattta 73
              ||||||||||||| | |||||||||||||
Sbjct: 146386 catgcaaaatcatgaatttgcaggattta 146414
to top
>emb|AL359234.4|CNS05TEL Human chromosome 14 DNA sequence BAC C-2184N20 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 115087

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 45     catgcaaaatcatcagtttgcaggattta 73
              ||||||||||||| | |||||||||||||
Sbjct: 100367 catgcaaaatcatgaatttgcaggattta 100339
to top
>emb|AL807794.6| Mouse DNA sequence from clone RP23-192K24 on chromosome 4, complete
             sequence
          Length = 96244

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 659   atgcccactattattttcctt 679
             |||||||||||||||||||||
Sbjct: 14465 atgcccactattattttcctt 14445
to top
>ref|NM_179535.1| Arabidopsis thaliana DNA binding AT1G69325 mRNA, complete cds
          Length = 363

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 416 tgttctcatgaggtttgctt 435
           ||||||||||||||||||||
Sbjct: 333 tgttctcatgaggtttgctt 314
to top
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome
          Length = 1899877

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tatctcttctgcatccaaac 94
             ||||||||||||||||||||
Sbjct: 58273 tatctcttctgcatccaaac 58254
to top
>gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome 18, complete sequence
          Length = 170302

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    tttactatctcttctgcatccaaa 93
             ||||||||||||||||||| ||||
Sbjct: 53433 tttactatctcttctgcattcaaa 53456
to top
>gb|AC126555.3| Mus musculus BAC clone RP23-474A17 from chromosome 13, complete sequence
          Length = 187704

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 633    gtcagatcattgccatcaga 652
              ||||||||||||||||||||
Sbjct: 154391 gtcagatcattgccatcaga 154372
to top
>ref|XM_765284.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_70_6420_9386)
            partial mRNA
          Length = 2967

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   tctcttctgcatccaaacca 96
            ||||||||||||||||||||
Sbjct: 1375 tctcttctgcatccaaacca 1356
to top
>ref|XM_765257.1| Giardia lamblia ATCC 50803 Zn-dependent peptidase
           (GLP_393_35946_39464) partial mRNA
          Length = 3519

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  gcaggatttactatctcttc 83
           ||||||||||||||||||||
Sbjct: 980 gcaggatttactatctcttc 999
to top
>emb|AL607026.11| Human DNA sequence from clone RP11-498G22 on chromosome 10, complete
             sequence
          Length = 172911

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   tagcaacactttccaaaagg 578
             ||||||||||||||||||||
Sbjct: 56151 tagcaacactttccaaaagg 56132
to top
>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two
             novel genes and three CpG islands, complete sequence
          Length = 158779

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    tttactatctcttctgcatc 89
             ||||||||||||||||||||
Sbjct: 68262 tttactatctcttctgcatc 68281
to top
>gb|AY267659.1| Bigelowiella natans PsbA maturation factor MBB1 mRNA, partial cds;
           nuclear gene for plastid product
          Length = 926

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 286 gctccaccatctccacgcta 305
           ||||||||||||||||||||
Sbjct: 123 gctccaccatctccacgcta 104
to top
>gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, complete sequence
          Length = 203204

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   cagcagtttccacttcccca 140
             ||||||||||||||||||||
Sbjct: 64778 cagcagtttccacttcccca 64797
to top
>gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0082N11, from chromosome 10, complete sequence
          Length = 183345

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   tgataccacctgatgaatcc 380
             ||||||||||||||||||||
Sbjct: 82087 tgataccacctgatgaatcc 82106
to top
>emb|BX942826.8| Mouse DNA sequence from clone RP23-34P2 on chromosome X, complete
            sequence
          Length = 40849

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 669  ttattttccttttttatcca 688
            ||||||||||||||||||||
Sbjct: 8519 ttattttccttttttatcca 8500
to top
>gb|AC024072.5| Homo sapiens chromosome 10 clone RP11-267O2, complete sequence
          Length = 150165

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   tagcaacactttccaaaagg 578
             ||||||||||||||||||||
Sbjct: 73837 tagcaacactttccaaaagg 73856
to top
>gb|AC153133.4| Mus musculus BAC clone RP24-389O11 from chromosome 13, complete
             sequence
          Length = 157007

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 633   gtcagatcattgccatcaga 652
             ||||||||||||||||||||
Sbjct: 26951 gtcagatcattgccatcaga 26932
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 361     tgataccacctgatgaatcc 380
               ||||||||||||||||||||
Sbjct: 7448223 tgataccacctgatgaatcc 7448242
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 361      tgataccacctgatgaatcc 380
                ||||||||||||||||||||
Sbjct: 11827435 tgataccacctgatgaatcc 11827454
to top
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence,
            complete sequence
          Length = 107214

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 416  tgttctcatgaggtttgctt 435
            ||||||||||||||||||||
Sbjct: 7029 tgttctcatgaggtttgctt 7010
to top
>gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BAC F23O10 genomic sequence, complete
             sequence
          Length = 93802

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   tgttctcatgaggtttgctt 435
             ||||||||||||||||||||
Sbjct: 33202 tgttctcatgaggtttgctt 33221
to top
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome
          Length = 1900521

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 75      tatctcttctgcatccaaac 94
               ||||||||||||||||||||
Sbjct: 1427784 tatctcttctgcatccaaac 1427803
to top
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome
          Length = 1894275

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     tatctcttctgcatccaaac 94
              ||||||||||||||||||||
Sbjct: 469101 tatctcttctgcatccaaac 469082
to top
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1012D10
          Length = 168267

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   tgataccacctgatgaatcc 380
             ||||||||||||||||||||
Sbjct: 39720 tgataccacctgatgaatcc 39739
to top
>emb|BX004792.8| Zebrafish DNA sequence from clone DKEY-1J19, complete sequence
          Length = 206371

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 583    cattttcaactttcaacctt 602
              ||||||||||||||||||||
Sbjct: 117883 cattttcaactttcaacctt 117902
to top
>gb|AY828165.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH10-7 noaCRR1
           retrotransposon, partial sequence
          Length = 1710

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 tgataccacctgatgaatcc 380
           ||||||||||||||||||||
Sbjct: 632 tgataccacctgatgaatcc 613
to top
>gb|AY827965.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH1-4 noaCRR1
           retrotransposon, partial sequence
          Length = 4258

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 tgataccacctgatgaatcc 380
           ||||||||||||||||||||
Sbjct: 717 tgataccacctgatgaatcc 698
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 361     tgataccacctgatgaatcc 380
               ||||||||||||||||||||
Sbjct: 7452422 tgataccacctgatgaatcc 7452441
to top
>emb|BX004789.7| Mouse DNA sequence from clone RP24-132K7 on chromosome 4, complete
             sequence
          Length = 79922

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 666   ctattattttccttttttat 685
             ||||||||||||||||||||
Sbjct: 16100 ctattattttccttttttat 16119
to top
>emb|BX294163.7| Zebrafish DNA sequence from clone DKEY-46D17 in linkage group 20,
             complete sequence
          Length = 115103

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   cattttcaactttcaacctt 602
             ||||||||||||||||||||
Sbjct: 23151 cattttcaactttcaacctt 23132
to top
>gb|AF015464.1|AF015464 Plasmodium falciparum microsatellite 14F sequence
          Length = 178

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 667 tattattttccttttttatc 686
           ||||||||||||||||||||
Sbjct: 93  tattattttccttttttatc 74
to top
>gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, complete sequence
          Length = 199589

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 667    tattattttccttttttatccattgcct 694
              |||||||||||| |||||| ||||||||
Sbjct: 104084 tattattttcctcttttatacattgcct 104111


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,962,158
Number of Sequences: 3902068
Number of extensions: 6962158
Number of successful extensions: 150704
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150227
Number of HSP's gapped (non-prelim): 476
length of query: 696
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 673
effective length of database: 17,143,297,704
effective search space: 11537439354792
effective search space used: 11537439354792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top