ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd24o05 |
|---|---|
| Clone Library Name | barley_pub |
>HSLU_BACHK (Q6HEY6) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 463 Score = 32.3 bits (72), Expect = 0.87 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Frame = -1 Query: 375 EAMFGVPMSSNVDTETSED-ELKTNGEGKKAEDVEAQPSSSLISDEVLXMQKMSWRERME 199 E +FG +SN T++ ED E++ KK +DVE + ++ L+ DE++ ++ + M Sbjct: 151 EMLFGGTQNSNQTTDSQEDVEIE-----KKRQDVERKLAAGLLEDEIVSIEVTEQQSSMF 205 Query: 198 KLRQNS 181 + Q + Sbjct: 206 DMLQGT 211
>HSLU_BACCZ (Q636J7) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 463 Score = 32.3 bits (72), Expect = 0.87 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Frame = -1 Query: 375 EAMFGVPMSSNVDTETSED-ELKTNGEGKKAEDVEAQPSSSLISDEVLXMQKMSWRERME 199 E +FG +SN T++ ED E++ KK +DVE + ++ L+ DE++ ++ + M Sbjct: 151 EMLFGGTQNSNQTTDSQEDVEIE-----KKRQDVERKLAAGLLEDEIVSIEVTEQQSSMF 205 Query: 198 KLRQNS 181 + Q + Sbjct: 206 DMLQGT 211
>HSLU_BACAN (Q81WK6) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 463 Score = 32.3 bits (72), Expect = 0.87 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Frame = -1 Query: 375 EAMFGVPMSSNVDTETSED-ELKTNGEGKKAEDVEAQPSSSLISDEVLXMQKMSWRERME 199 E +FG +SN T++ ED E++ KK +DVE + ++ L+ DE++ ++ + M Sbjct: 151 EMLFGGTQNSNQTTDSQEDVEIE-----KKRQDVERKLAAGLLEDEIVSIEVTEQQSSMF 205 Query: 198 KLRQNS 181 + Q + Sbjct: 206 DMLQGT 211
>CH10_LACHE (O68323) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 30.8 bits (68), Expect = 2.5 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = -1 Query: 393 VRDAHDEAMFGVPMSSNVDTETSEDELKTNGEGKKAEDVEAQPSSSLISDEVL 235 V+D ++ + G+ ++SN + +E E+ GEG A + E P S D VL Sbjct: 13 VKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVL 65
>AT1B4_PIG (Q9BDK6) X/potassium-transporting ATPase beta-m chain (X,K-ATPase| beta-m subunit) Length = 355 Score = 30.4 bits (67), Expect = 3.3 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Frame = -1 Query: 441 GKSFRLSTVESKNENVVRDAHDEAMFG-VPMSSNVDTETSEDELKTNGEGKKAEDVEAQP 265 G +RL + N+N + D +EA V + +++ E E+E + + K+ E+ Q Sbjct: 16 GYGYRLDDQDEVNQNYLADEEEEAEEARVMVVPDLEEEEKEEEEEKEEDEKEEEESHHQD 75 Query: 264 SSSLISDEVLXMQKMSW--RERMEKLRQNSNT*N*SLL*KVEYCMFPHQLFYS*THCMYQ 91 + S ++ + + W +RM R + SLL V Y F L T CMY Sbjct: 76 TRSAWWQKLQIVNEYLWDPEKRMSLARTGQSL---SLL-LVIYFFFYASLAAVITLCMYT 131 Query: 90 L 88 L Sbjct: 132 L 132
>CEP2_HUMAN (Q9BV73) Centrosomal protein 2 (Centrosomal Nek2-associated protein| 1) (C-NAP1) (Centrosome protein 250) (Centrosome-associated protein CEP250) Length = 2442 Score = 30.4 bits (67), Expect = 3.3 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = -1 Query: 330 TSEDELKTNGEGK----KAEDVEAQPSSSLISDEVLXMQKMSWRERMEKLRQ 187 TS EL + GE + VEA+PS M+K SWR+R+E L+Q Sbjct: 2233 TSTAELGSRGEQGVQLGEVSGVEAEPSPD-------GMEKQSWRQRLEHLQQ 2277
>WBP4_CHICK (Q5F457) WW domain-binding protein 4 (WBP-4)| Length = 398 Score = 30.4 bits (67), Expect = 3.3 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 11/81 (13%) Frame = -1 Query: 417 VESKNENVVRDAHDEAMFGVPMSSNVDTETSEDE-------LKTNGEGKKAEDVEAQPSS 259 V S N+N R H E S+ + E SE E LK GE + + E P + Sbjct: 210 VSSSNDNSQRGKHSEEADSRASESDSEQEDSESEGQSPGTNLKRKGENDEESEKEKSPKA 269 Query: 258 SLISD----EVLXMQKMSWRE 208 +S + Q++ W+E Sbjct: 270 KKLSPYGKWREVKWQEVKWQE 290
>SSRA_MOUSE (Q9CY50) Translocon-associated protein alpha subunit precursor| (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha) Length = 286 Score = 30.4 bits (67), Expect = 3.3 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = -1 Query: 441 GKSFRLSTVESKNENVVRDAHDEAMFGVPMSSNVDTETSEDELKTNGEGKKAEDVEAQPS 262 G S L+ +++E +V D+ E + + E EDE E K+ EDV ++P Sbjct: 26 GGSLALAQDPTEDEEIVEDSIIE-------DEDDEAEVEEDEPTDLAEDKEEEDVSSEPE 78 Query: 261 SSLISDEVLXMQK 223 +S +D + K Sbjct: 79 ASPSADTTILFVK 91
>PRP40_HUMAN (O75400) Pre-mRNA-processing factor 40 homolog A (Formin-binding| protein 3) (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas ligand-associated factor 1) (NY-REN-6 antigen) Length = 957 Score = 29.6 bits (65), Expect = 5.6 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = -1 Query: 360 VPMSSNVDTETSEDELKTNGEGKKAEDVEAQPSSSLISDEVLXMQKMSWRERMEKLRQNS 181 V +SSN ETS+ E + KK E+ E+QP+ + K +++E +++ R S Sbjct: 353 VEVSSNTGEETSKQETVADFTPKKEEE-ESQPAKKTYTWNTKEEAKQAFKELLKEKRVPS 411 Query: 180 N 178 N Sbjct: 412 N 412
>SSRA_CANFA (P16967) Translocon-associated protein alpha subunit precursor| (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha) (PGP35) Length = 286 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = -1 Query: 414 ESKNENVVRDAHDEAMFGVPMSSNVDTETSEDELKTNGEGKKAEDVEAQPSSSLISDEVL 235 E+ ++++ D DEA E EDE E K+ EDV +P +S +D + Sbjct: 40 ETVEDSIIEDEDDEA------------EVEEDEPTDLAEDKEEEDVSGEPEASPSADTTI 87 Query: 234 XMQK 223 K Sbjct: 88 LFVK 91
>AT1B4_HUMAN (Q9UN42) X/potassium-transporting ATPase beta-m chain (X,K-ATPase| beta-m subunit) Length = 357 Score = 29.6 bits (65), Expect = 5.6 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Frame = -1 Query: 432 FRLSTVESKNENVVRDAHDEA-----MFGVPMSSNVDTETSEDELKTNGEGKKAEDVEAQ 268 +RL + N+N + D +EA + VP S + E E++ + E K+ E+ + Q Sbjct: 19 YRLDDPDEANQNYLADEEEEAEEEARVTVVPKSE--EEEEEEEKEEEEEEEKEEEEGQGQ 76 Query: 267 PSSSLISDEVLXMQKMSW-RERMEKLRQNSNT*N*SLL*KVEYCMFPHQLFYS*THCMYQ 91 P+ + ++ M + W ER L + + + LL Y F L T CMY Sbjct: 77 PTGNAWWQKLQIMSEYLWDPERRMFLARTGQSWSLILL---IYFFFYASLAAVITLCMYT 133 Query: 90 L 88 L Sbjct: 134 L 134
>SSRA_RABIT (P53815) Translocon-associated protein alpha subunit precursor| (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha) Length = 286 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = -1 Query: 414 ESKNENVVRDAHDEAMFGVPMSSNVDTETSEDELKTNGEGKKAEDVEAQPSSSLISDEVL 235 E+ ++V+ D DEA E EDE E ++ EDV +P +S +D + Sbjct: 40 ETVEDSVIEDEDDEA------------EVEEDEPTDLAEDREEEDVSGEPEASPSADTTI 87 Query: 234 XMQK 223 K Sbjct: 88 LFVK 91
>RAD7_YEAST (P06779) DNA repair protein RAD7| Length = 565 Score = 28.9 bits (63), Expect = 9.6 Identities = 19/78 (24%), Positives = 35/78 (44%) Frame = -1 Query: 414 ESKNENVVRDAHDEAMFGVPMSSNVDTETSEDELKTNGEGKKAEDVEAQPSSSLISDEVL 235 +S + R DE + + S +TE ++ + A+ E + +S ISD + Sbjct: 63 DSFTAEISRVVEDEEIDEIGTGSGTETERAQVSYDARMKLVPADSDEEEYETSHISDTPV 122 Query: 234 XMQKMSWRERMEKLRQNS 181 + + RE + K RQN+ Sbjct: 123 SLSSANDRESLTKKRQNT 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,484,457 Number of Sequences: 219361 Number of extensions: 894786 Number of successful extensions: 2467 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2466 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
