Clone Name | rbasd25d01 |
---|---|
Clone Library Name | barley_pub |
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.51 Identities = 25/27 (92%) Strand = Plus / Minus Query: 43 gctgccgncgaggcgcgcgngccgagc 69 ||||||| ||||||||||| ||||||| Sbjct: 3638076 gctgccgccgaggcgcgcgagccgagc 3638050
>emb|BX296566.5| Zebrafish DNA sequence from clone CH211-196F4 in linkage group 11, complete sequence Length = 128109 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ataatgcagcaaagacgcacg 139 ||||||||||||||||||||| Sbjct: 58808 ataatgcagcaaagacgcacg 58828
>gb|AY787873.1| Zea mays zinc finger protein (znf1) mRNA, complete cds Length = 1000 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 841 cttacacaacatagccaaca 822
>gb|BT016379.1| Zea mays clone Contig212 mRNA sequence Length = 1020 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 859 cttacacaacatagccaaca 840
>gb|BT017601.1| Zea mays clone EL01N0431H03.c mRNA sequence Length = 941 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 865 cttacacaacatagccaaca 846
>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3 (SAP-3) mRNA, complete cds Length = 1132 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 781 cttacacaacatagccaaca 762
>gb|AY515607.1| Zea mays putative zinc finger protein ZmZf mRNA, complete cds Length = 1162 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 1036 cttacacaacatagccaaca 1017
>gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82 mRNA sequence Length = 391 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 327 cttacacaacatagccaaca 308
>gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77 mRNA sequence Length = 391 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 327 cttacacaacatagccaaca 308
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 24110126 cttacacaacatagccaaca 24110107
>gb|AF222338.1|AF222338 Rattus norvegicus voltage gated N-type calcium channel alpha1B gene, partial cds, alternatively spliced Length = 6340 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 gaagccagcatgatgaaaggataa 122 ||||||||||||| |||||||||| Sbjct: 2259 gaagccagcatgaggaaaggataa 2282
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 43584 cttacacaacatagccaaca 43565
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 119819 cttacacaacatagccaaca 119800
>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full insert sequence Length = 999 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 870 cttacacaacatagccaaca 851
>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full insert sequence Length = 1009 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 870 cttacacaacatagccaaca 851
>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full insert sequence Length = 1000 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 871 cttacacaacatagccaaca 852
>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full insert sequence Length = 1209 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 868 cttacacaacatagccaaca 849
>dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F03, full insert sequence Length = 631 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 509 cttacacaacatagccaaca 490
>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full insert sequence Length = 1021 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttacacaacatagccaaca 20 |||||||||||||||||||| Sbjct: 867 cttacacaacatagccaaca 848
>ref|NM_031131.1| Rattus norvegicus transforming growth factor, beta 2 (Tgfb2), mRNA Length = 2880 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 agaagccagcatgatgaaa 116 ||||||||||||||||||| Sbjct: 2619 agaagccagcatgatgaaa 2637
>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete sequence Length = 308703 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 atgaaaggataatgcagca 129 ||||||||||||||||||| Sbjct: 65364 atgaaaggataatgcagca 65382
>gb|AF153013.1|AF153013 Rattus norvegicus TGF-beta 2 short form precursor (TGF-beta2) mRNA, complete cds Length = 2796 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 agaagccagcatgatgaaa 116 ||||||||||||||||||| Sbjct: 2535 agaagccagcatgatgaaa 2553
>gb|AF153012.2|AF153012 Rattus norvegicus TGF-beta 2 long form precursor (TGF-beta2) mRNA, complete cds Length = 2880 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 agaagccagcatgatgaaa 116 ||||||||||||||||||| Sbjct: 2619 agaagccagcatgatgaaa 2637
>emb|AL117355.5|CNS01DRL Human chromosome 14 DNA sequence BAC R-354E14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174933 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 acacaacatagccaacaag 22 ||||||||||||||||||| Sbjct: 87575 acacaacatagccaacaag 87557 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 745,963 Number of Sequences: 3902068 Number of extensions: 745963 Number of successful extensions: 46689 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46623 Number of HSP's gapped (non-prelim): 66 length of query: 164 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 142 effective length of database: 17,147,199,772 effective search space: 2434902367624 effective search space used: 2434902367624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)