ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 0.51
2emb|BX296566.5| Zebrafish DNA sequence from clone CH211-196F4 in... 42 0.51
3gb|AY787873.1| Zea mays zinc finger protein (znf1) mRNA, complet... 40 2.0
4gb|BT016379.1| Zea mays clone Contig212 mRNA sequence 40 2.0
5gb|BT017601.1| Zea mays clone EL01N0431H03.c mRNA sequence 40 2.0
6gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-assoc... 40 2.0
7gb|AY515607.1| Zea mays putative zinc finger protein ZmZf mRNA, ... 40 2.0
8gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82... 40 2.0
9gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77... 40 2.0
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.0
11gb|AF222338.1|AF222338 Rattus norvegicus voltage gated N-type ca... 40 2.0
12dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.0
13dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.0
14dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.0
15dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.0
16dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.0
17dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.0
18dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.0
19dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.0
20ref|NM_031131.1| Rattus norvegicus transforming growth factor, b... 38 7.9
21gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromoso... 38 7.9
22gb|AF153013.1|AF153013 Rattus norvegicus TGF-beta 2 short form p... 38 7.9
23gb|AF153012.2|AF153012 Rattus norvegicus TGF-beta 2 long form pr... 38 7.9
24emb|AL117355.5|CNS01DRL Human chromosome 14 DNA sequence BAC R-3... 38 7.9

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 43      gctgccgncgaggcgcgcgngccgagc 69
               ||||||| ||||||||||| |||||||
Sbjct: 3638076 gctgccgccgaggcgcgcgagccgagc 3638050



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>emb|BX296566.5| Zebrafish DNA sequence from clone CH211-196F4 in linkage group 11,
             complete sequence
          Length = 128109

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   ataatgcagcaaagacgcacg 139
             |||||||||||||||||||||
Sbjct: 58808 ataatgcagcaaagacgcacg 58828



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>gb|AY787873.1| Zea mays zinc finger protein (znf1) mRNA, complete cds
          Length = 1000

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 841 cttacacaacatagccaaca 822



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>gb|BT016379.1| Zea mays clone Contig212 mRNA sequence
          Length = 1020

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 859 cttacacaacatagccaaca 840



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>gb|BT017601.1| Zea mays clone EL01N0431H03.c mRNA sequence
          Length = 941

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 865 cttacacaacatagccaaca 846



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>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3
           (SAP-3) mRNA, complete cds
          Length = 1132

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 781 cttacacaacatagccaaca 762



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>gb|AY515607.1| Zea mays putative zinc finger protein ZmZf mRNA, complete cds
          Length = 1162

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    cttacacaacatagccaaca 20
            ||||||||||||||||||||
Sbjct: 1036 cttacacaacatagccaaca 1017



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>gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82 mRNA sequence
          Length = 391

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 327 cttacacaacatagccaaca 308



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>gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77 mRNA sequence
          Length = 391

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 327 cttacacaacatagccaaca 308



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 1        cttacacaacatagccaaca 20
                ||||||||||||||||||||
Sbjct: 24110126 cttacacaacatagccaaca 24110107



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>gb|AF222338.1|AF222338 Rattus norvegicus voltage gated N-type calcium channel alpha1B gene,
            partial cds, alternatively spliced
          Length = 6340

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 99   gaagccagcatgatgaaaggataa 122
            ||||||||||||| ||||||||||
Sbjct: 2259 gaagccagcatgaggaaaggataa 2282



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>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417G12
          Length = 163568

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     cttacacaacatagccaaca 20
             ||||||||||||||||||||
Sbjct: 43584 cttacacaacatagccaaca 43565



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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0429G06
          Length = 158321

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      cttacacaacatagccaaca 20
              ||||||||||||||||||||
Sbjct: 119819 cttacacaacatagccaaca 119800



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>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full
           insert sequence
          Length = 999

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 870 cttacacaacatagccaaca 851



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>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full
           insert sequence
          Length = 1009

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 870 cttacacaacatagccaaca 851



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>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full
           insert sequence
          Length = 1000

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 871 cttacacaacatagccaaca 852



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>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full
           insert sequence
          Length = 1209

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 868 cttacacaacatagccaaca 849



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>dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F03, full
           insert sequence
          Length = 631

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 509 cttacacaacatagccaaca 490



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>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full
           insert sequence
          Length = 1021

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   cttacacaacatagccaaca 20
           ||||||||||||||||||||
Sbjct: 867 cttacacaacatagccaaca 848



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>ref|NM_031131.1| Rattus norvegicus transforming growth factor, beta 2 (Tgfb2), mRNA
          Length = 2880

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   agaagccagcatgatgaaa 116
            |||||||||||||||||||
Sbjct: 2619 agaagccagcatgatgaaa 2637



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>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete
             sequence
          Length = 308703

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 111   atgaaaggataatgcagca 129
             |||||||||||||||||||
Sbjct: 65364 atgaaaggataatgcagca 65382



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>gb|AF153013.1|AF153013 Rattus norvegicus TGF-beta 2 short form precursor (TGF-beta2) mRNA,
            complete cds
          Length = 2796

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   agaagccagcatgatgaaa 116
            |||||||||||||||||||
Sbjct: 2535 agaagccagcatgatgaaa 2553



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>gb|AF153012.2|AF153012 Rattus norvegicus TGF-beta 2 long form precursor (TGF-beta2) mRNA,
            complete cds
          Length = 2880

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   agaagccagcatgatgaaa 116
            |||||||||||||||||||
Sbjct: 2619 agaagccagcatgatgaaa 2637



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>emb|AL117355.5|CNS01DRL Human chromosome 14 DNA sequence BAC R-354E14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174933

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     acacaacatagccaacaag 22
             |||||||||||||||||||
Sbjct: 87575 acacaacatagccaacaag 87557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 745,963
Number of Sequences: 3902068
Number of extensions: 745963
Number of successful extensions: 46689
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46623
Number of HSP's gapped (non-prelim): 66
length of query: 164
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 142
effective length of database: 17,147,199,772
effective search space: 2434902367624
effective search space used: 2434902367624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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