ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24n17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JMT_BRARP (Q9SBK6) Jasmonate O-methyltransferase (EC 2.1.1.141) ... 32 1.4
2RL23_TRYCR (Q94776) 60S ribosomal protein L23 (L17) (TCEST082) 31 2.5
3LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent ... 30 7.2
4LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-la... 30 7.2
5CST1L_HUMAN (Q9H114) Cystatin-like 1 precursor (RCET11) 30 7.2
6RNY1_ASHGO (Q75BW5) Ribonuclease T2-like precursor (EC 3.1.27.1)... 29 9.4
7MURG_HELHP (Q7U322) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 29 9.4
8PEPQ_LACHE (O84913) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dip... 29 9.4
9Y4WG_RHISN (P55685) Hypothetical 19.4 kDa protein y4wG 29 9.4

>JMT_BRARP (Q9SBK6) Jasmonate O-methyltransferase (EC 2.1.1.141)|
           (S-adenosyl-L-methionine:jasmonic acid carboxyl
           methyltransferase) (Floral nectary-specific protein 1)
          Length = 392

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = +2

Query: 68  KIFRWESQNKG*AEKCYAKNSCFQS------RRCSPKALVYQFVHEADLLKTGFIALSSS 229
           ++ R    NKG  E  YAKNS  QS      RR   +AL    +  +++L  G   L  S
Sbjct: 2   EVMRILHMNKGNGETSYAKNSIVQSNIISLGRRVMDEALKKLMIRNSEILSFGIADLGCS 61

Query: 230 KAIIPRCEGSSSNILAT 280
               P    S SNI+ T
Sbjct: 62  SG--PNSLLSISNIVET 76



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>RL23_TRYCR (Q94776) 60S ribosomal protein L23 (L17) (TCEST082)|
          Length = 141

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -1

Query: 453 LTAASIKTGRPQIARR---AIDLAERRLL--KDGWPEYYDGKLGKYVGKQARKFQTWSIA 289
           +  AS+K G+P++ R+   A+ + +R+    KDG   Y++   G  V  Q R  +   IA
Sbjct: 59  IVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIA 118

Query: 288 G 286
           G
Sbjct: 119 G 119



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>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent|
            alpha-latrotoxin receptor 1) (CIRL-1)
          Length = 1515

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -3

Query: 229  GRGQGNEASFEKVRLMDKLIHKSFRGATSGLK 134
            GR   + A+FEK+ ++ +L+H + RGA+ G K
Sbjct: 1314 GRNLADAAAFEKM-IISELVHNNLRGASGGAK 1344



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>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin receptor|
            1) (Lectomedin-2) (Fragment)
          Length = 1406

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -3

Query: 229  GRGQGNEASFEKVRLMDKLIHKSFRGATSGLK 134
            GR   + A+FEK+ ++ +L+H + RGA+ G K
Sbjct: 1205 GRNLADAAAFEKM-IISELVHNNLRGASGGAK 1235



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>CST1L_HUMAN (Q9H114) Cystatin-like 1 precursor (RCET11)|
          Length = 145

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 139 LKTRILRVAFLCSSLVLTFPTENFIFFWDSSAXQ 38
           L+++ LR + +C SL+ T P  N+   W++S  +
Sbjct: 103 LQSKKLRKSLICESLIYTMPWINYFQLWNNSCLE 136



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>RNY1_ASHGO (Q75BW5) Ribonuclease T2-like precursor (EC 3.1.27.1) (RNase|
           T2-like)
          Length = 292

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 316 CLLANIFSKFTIVILRPAILQQPPLS*VNCSSCNLRPSSFDACCREQP 459
           CLL++ F +F      P +   P  S    S+C    +  D CC E P
Sbjct: 18  CLLSHAFQEFITKFPMPMMYNFPSCSSTIPSTCRNETAIADTCCFEYP 65



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>MURG_HELHP (Q7U322) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 350

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 176 FVHEADLLKTGF--IALSSSKAIIPRCEGSSSNILATKYPAIDQ 301
           F+HE + +K     I    +KAI    EG S N + T YP  D+
Sbjct: 118 FIHEQNAIKGKLNEILTPFAKAIFGSFEGKSKNFIHTSYPVRDE 161



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>PEPQ_LACHE (O84913) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase)|
           (Proline dipeptidase) (Prolidase) (Imidodipeptidase)
          Length = 368

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 444 ASIKTGRPQIARRAIDLAERRLL-KDGWPEYYDGKLGKYVGKQARKF 307
           A+I+  +P I    +D   R ++ K G+ EY+  +LG  +GK   ++
Sbjct: 261 AAIEAAKPGITAEELDSVARDIITKAGYGEYFIHRLGHGIGKNVHEY 307



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>Y4WG_RHISN (P55685) Hypothetical 19.4 kDa protein y4wG|
          Length = 181

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 327 GKQARKFQTWSIAGYLVAKMLLEDPSHLGMIAL 229
           GK+ RKF+ ++ AG+ V   L  D S+ GM+++
Sbjct: 111 GKEERKFKPFAAAGFSVRAGLAADGSNSGMLSI 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,968,465
Number of Sequences: 219361
Number of extensions: 1976680
Number of successful extensions: 5695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5694
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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