ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XT1_ARATH (Q9LZJ3) Xyloglucan 6-xylosyltransferase (EC 2.4.2.39)... 29 8.3

>XT1_ARATH (Q9LZJ3) Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1)|
          Length = 460

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 529 WSDELYDGELYKFQSIGLGSGDSFPLPENWRVDVLQAWQP 410
           W++ +YD + +    IGL +G        W +D+L AW P
Sbjct: 254 WNEMVYDQKNW----IGLNTGSFLLRNSQWSLDLLDAWAP 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,014,360
Number of Sequences: 219361
Number of extensions: 1600710
Number of successful extensions: 3743
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3741
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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