ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24n11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, complete cds, clone:6, subclone:16 Length = 5980 Score = 129 bits (65), Expect = 4e-27 Identities = 143/169 (84%), Gaps = 6/169 (3%) Strand = Plus / Minus Query: 1 tatattataaatatgacacaggtgttcgtatatgtgtaggcggngctagaatttacatat 60 ||||| |||||||| |||| |||||| |||||||||||| ||| |||||||||||||||| Sbjct: 1460 tatataataaatatcacactggtgtt-gtatatgtgtagccggtgctagaatttacatat 1402 Query: 61 gcatatatgctccacaacctatgctcgtacatacacagancatagagaa-gaaaattatg 119 || ||||||||||||||||| ||||||| ||||||| |||| ||| ||||| |||| Sbjct: 1401 gc----atgctccacaacctatgttcgtacaaacacagatcataccgaaggaaaaatatg 1346 Query: 120 ctntggtcggaaagcngagncgnggacaaaagtnaanttnacaaaagac 168 || ||||||| |||| ||| | |||||||||| || || ||||||||| Sbjct: 1345 ctctggtcgggaagcagagtcctggacaaaagtgaagttcacaaaagac 1297 Score = 81.8 bits (41), Expect = 8e-13 Identities = 141/173 (81%), Gaps = 7/173 (4%) Strand = Plus / Minus Query: 1 tatattataaatatgacacaggtgttcgtatatgtgtaggcggngctagaatttacatat 60 ||||| |||||||| ||| ||||||| |||||||||||| | | ||||||||||||| || Sbjct: 5863 tatataataaatatcacataggtgtt-gtatatgtgtagtcagtgctagaatttacacat 5805 Query: 61 gcatatatgctccacaacctatgctcgtacatacacagancatagagaa-gaaaattatg 119 ||| ||||||||||| ||| ||||||||||||| | ||| |||| ||||| |||| Sbjct: 5804 gcac----gctccacaaccaatgttcgtacatacacatattatacagaacgaaaaatatg 5749 Query: 120 ctntggtcggaaagcngagncgnggacaaaagtnaanttnacaaaagaccttc 172 || |||| || ||| ||| || ||| |||||| || || ||||||||||||| Sbjct: 5748 ctctggtagg-cagcagagtcgtggagaaaagtgaagttcacaaaagaccttc 5697 Score = 79.8 bits (40), Expect = 3e-12 Identities = 75/87 (86%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 67 atgctccacaacctatgctcgtacatacacagancatagagaa-gaaaattatgctntgg 125 ||||||||||||||||| | ||||||||||||| |||| |||| ||||||||||| || Sbjct: 4453 atgctccacaacctatgtttgtacatacacagatcatacagaacaaaaattatgcttagg 4394 Query: 126 tcggaaagcngagncgnggacaaaagt 152 ||||||||| ||| || ||| |||||| Sbjct: 4393 tcggaaagcagagtcgtggagaaaagt 4367
>gb|AC092642.2| Homo sapiens BAC clone RP11-391P1 from 2, complete sequence Length = 152251 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Plus Query: 48 agaatttacatatgcatatatgc 70 ||||||||||||||||||||||| Sbjct: 124176 agaatttacatatgcatatatgc 124198
>emb|AL772245.7| Mouse DNA sequence from clone RP23-332K6 on chromosome 4, complete sequence Length = 70508 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 aatttacatatgcatatatgc 70 ||||||||||||||||||||| Sbjct: 46373 aatttacatatgcatatatgc 46393
>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete sequence Length = 228428 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gaatttacatatgcatatatg 69 ||||||||||||||||||||| Sbjct: 158744 gaatttacatatgcatatatg 158764
>gb|AC135567.3| Mus musculus BAC clone RP23-312I24 from chromosome 16, complete sequence Length = 208603 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 atttacatatgcatatatgc 70 |||||||||||||||||||| Sbjct: 85767 atttacatatgcatatatgc 85748
>gb|AC133967.2| Mus musculus BAC clone RP23-14J5 from chromosome 16, complete sequence Length = 195446 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 atttacatatgcatatatgc 70 |||||||||||||||||||| Sbjct: 152904 atttacatatgcatatatgc 152885
>gb|DP000038.2| Colobus guereza target 106 genomic scaffold Length = 481828 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tattataaatatgacacagg 22 |||||||||||||||||||| Sbjct: 378209 tattataaatatgacacagg 378190
>gb|AC012236.12| Homo sapiens chromosome 15, clone RP11-16E12, complete sequence Length = 173729 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 tacatatgcatatatgctccacaa 77 ||||||||||||||| |||||||| Sbjct: 56450 tacatatgcatatattctccacaa 56427
>emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in linkage group 14, complete sequence Length = 181055 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ttacatatgcatatatgctc 72 |||||||||||||||||||| Sbjct: 42670 ttacatatgcatatatgctc 42651 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,713,644 Number of Sequences: 3902068 Number of extensions: 1713644 Number of successful extensions: 149963 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149927 Number of HSP's gapped (non-prelim): 33 length of query: 215 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 193 effective length of database: 17,147,199,772 effective search space: 3309409555996 effective search space used: 3309409555996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
