Clone Information

BLAST Search Result

Clone Name	rbasd25c10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	107	6e-24
2	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	50	1e-06
3	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	50	1e-06
4	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	50	2e-06
5	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	48	5e-06
6	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	48	5e-06
7	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	44	8e-05
8	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	44	8e-05
9	PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2	44	8e-05
10	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	43	2e-04
11	NUCL_XENLA (P20397) Nucleolin (Protein C23)	40	0.001
12	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	39	0.003
13	PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1	39	0.004
14	MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA...	37	0.009
15	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	37	0.012
16	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	37	0.016
17	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	37	0.016
18	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	36	0.021
19	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	36	0.027
20	NUCL_CHICK (P15771) Nucleolin (Protein C23)	35	0.036
21	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	35	0.061
22	TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A pro...	35	0.061
23	S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplas...	34	0.10
24	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	33	0.14
25	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	33	0.23
26	NUCL_MESAU (P08199) Nucleolin (Protein C23)	33	0.23
27	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	33	0.23
28	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	32	0.30
29	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	32	0.30
30	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	32	0.30
31	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	32	0.40
32	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	32	0.52
33	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	32	0.52
34	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	32	0.52
35	NUCL_RAT (P13383) Nucleolin (Protein C23)	32	0.52
36	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	30	1.2
37	YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ...	30	1.2
38	DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111...	30	1.2
39	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	30	1.5
40	NUCL_MACFA (Q4R4J7) Nucleolin	30	1.5
41	NUCL_PONPY (Q5RF26) Nucleolin	30	1.5
42	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	30	1.5
43	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	30	1.5
44	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	30	1.5
45	YKV4_YEAST (P36036) Hypothetical 23.8 kDa protein in URA1-DOA1 i...	30	1.5
46	G6PI_AGABI (Q711G1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (...	29	2.6
47	GLGC_CLOCE (Q9L385) Glucose-1-phosphate adenylyltransferase (EC ...	29	2.6
48	RL16_MYCPU (Q98PY9) 50S ribosomal protein L16	29	3.4
49	DXR_NITEU (Q82U01) 1-deoxy-D-xylulose 5-phosphate reductoisomera...	29	3.4
50	PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	29	3.4
51	PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5....	29	3.4
52	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	29	3.4
53	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	29	3.4
54	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	29	3.4
55	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	29	3.4
56	NAM8_YEAST (Q00539) Protein NAM8	29	3.4
57	DNE21_RHIME (Q92LA6) Error-prone DNA polymerase 1 (EC 2.7.7.7)	29	3.4
58	LRC57_XENLA (Q6INV3) Leucine-rich repeat-containing protein 57	28	4.4
59	CSD_SYNY3 (Q55793) Probable cysteine desulfurase (EC 2.8.1.7)	28	4.4
60	Y1386_PASMU (Q9CL57) Hypothetical protein PM1386	28	4.4
61	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	28	4.4
62	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	28	5.7
63	SPEN_DROME (Q8SX83) Protein split ends	28	5.7
64	HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (...	28	5.7
65	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	28	5.7
66	RPOA_MYCH7 (Q4A8J7) DNA-directed RNA polymerase alpha chain (EC ...	28	5.7
67	VIP1_SCHPO (P87216) Protein vip1	28	7.5
68	ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in...	28	7.5
69	ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in...	28	7.5
70	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	28	7.5
71	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	28	7.5
72	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	28	7.5
73	PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 ...	28	7.5
74	RUMA_BORPE (Q7VXM6) 23S rRNA (uracil-5-)-methyltransferase rumA ...	28	7.5
75	CEND1_MOUSE (Q8BZ05) Centaurin-delta 1 (Cnt-d1)	27	9.8
76	YBY1_SCHPO (Q10200) Hypothetical protein C11C11.01 in chromosome II	27	9.8
77	TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)	27	9.8
78	TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)	27	9.8
79	RUMA_BORPA (Q7W676) 23S rRNA (uracil-5-)-methyltransferase rumA ...	27	9.8
80	RUMA_BORBR (Q7WI42) 23S rRNA (uracil-5-)-methyltransferase rumA ...	27	9.8
81	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	27	9.8

>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score =  107 bits (268), Expect = 6e-24
 Identities = 49/80 (61%), Positives = 65/80 (81%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           PTK+IH+S L  +++E+ ++ H+ EHG +V +K+FE +GK QALVQFE+EEEA EALVCK
Sbjct: 353 PTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCK 412

Query: 150 HASKLEGSTIRISFSQMQNI 91
           HA+ L GS IRISFSQ+Q I
Sbjct: 413 HATSLGGSIIRISFSQLQTI 432



 Score = 36.2 bits (82), Expect = 0.021
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEAL--VC 154
           +K++H+  +  EISE+ +++     G I K  +  A  K QAL+Q +    A  AL    
Sbjct: 5   SKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRA--KNQALLQMQDVSSAVSALQFFT 62

Query: 153 KHASKLEGSTIRISFSQMQNI 91
                + G  + + FS  Q +
Sbjct: 63  NVQPTIRGRNVYVQFSSHQEL 83

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+  +H+S + P +SED +    S +G +VK   F    +  AL+Q  S EEA +AL+  
Sbjct: 448 PSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIEL 507

Query: 150 HASKL-EGSTIRISFSQ 103
           H   L E   +R+SFS+
Sbjct: 508 HNHDLGENHHLRVSFSK 524



 Score = 30.8 bits (68), Expect = 0.88
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P   I +  L   ++ D + +  S+ GT++K   F  + + QAL+Q+     A  A +  
Sbjct: 181 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL 240

Query: 150 HASKLEGS--TIRISFSQMQNI 91
               +  +  T+RI FS++ ++
Sbjct: 241 DGQNIYNACCTLRIDFSKLTSL 262

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+  +H+S + P +SED +    S +G +VK   F    +  AL+Q  S EEA +AL+  
Sbjct: 476 PSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIEL 535

Query: 150 HASKL-EGSTIRISFSQ 103
           H   L E   +R+SFS+
Sbjct: 536 HNHDLGENHHLRVSFSK 552



 Score = 30.8 bits (68), Expect = 0.88
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P   I +  L   ++ D + +  S+ GT++K   F  + + QAL+Q+     A  A +  
Sbjct: 181 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL 240

Query: 150 HASKLEGS--TIRISFSQMQNI 91
               +  +  T+RI FS++ ++
Sbjct: 241 DGQNIYNACCTLRIDFSKLTSL 262



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -2

Query: 321 IIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHA 145
           ++ +S L+PE ++  ++      +G + + K+   + K  ALV+     +A  A+   + 
Sbjct: 362 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVEMADGSQAQLAMSHLNG 420

Query: 144 SKLEGSTIRISFSQMQNI 91
            KL G ++RI+ S+ Q++
Sbjct: 421 HKLHGKSVRITLSKHQSV 438

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+  +H+S + P ISED +    S +G IVK   F    +  AL+Q  S EEA +AL+  
Sbjct: 452 PSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDL 511

Query: 150 HASKL-EGSTIRISFSQ 103
           H   L E   +R+SFS+
Sbjct: 512 HNHDLGENHHLRVSFSK 528



 Score = 30.8 bits (68), Expect = 0.88
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P   I +  L   ++ D + +  S+ GT++K   F  + + QAL+Q+     A  A +  
Sbjct: 182 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL 241

Query: 150 HASKLEGS--TIRISFSQMQNI 91
               +  +  T+RI FS++ ++
Sbjct: 242 DGQNIYNACCTLRIDFSKLTSL 263



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -2

Query: 321 IIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHA 145
           ++ +S L+PE ++  ++      +G + + K+   + K  ALVQ     +A  A+   + 
Sbjct: 338 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKVL-FNKKENALVQMADGSQAQLAMSHLNG 396

Query: 144 SKLEGSTIRISFSQMQNI 91
            KL G  +RI+ S+ Q++
Sbjct: 397 HKLHGKPVRITLSKHQSV 414

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+  +H+S + P +SE+ +    S +G +VK   F    +  AL+Q  S EEA +AL+  
Sbjct: 452 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL 511

Query: 150 HASKL-EGSTIRISFSQ 103
           H   L E   +R+SFS+
Sbjct: 512 HNHDLGENHHLRVSFSK 528



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -2

Query: 321 IIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHA 145
           ++ +S L+PE ++  ++      +G + + K+   + K  ALVQ     +A  A+   + 
Sbjct: 338 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGNQAQLAMSHLNG 396

Query: 144 SKLEGSTIRISFSQMQNI 91
            KL G  IRI+ S+ QN+
Sbjct: 397 HKLHGKPIRITLSKHQNV 414



 Score = 30.8 bits (68), Expect = 0.88
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P   I +  L   ++ D + +  S+ GT++K   F  + + QAL+Q+     A  A +  
Sbjct: 182 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL 241

Query: 150 HASKLEGS--TIRISFSQMQNI 91
               +  +  T+RI FS++ ++
Sbjct: 242 DGQNIYNACCTLRIDFSKLTSL 263

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+  +H+S + P ISE+ +    S +G IVK   F    +  AL+Q  S EEA +AL+  
Sbjct: 478 PSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDL 537

Query: 150 HASKL-EGSTIRISFSQ 103
           H   L E   +R+SFS+
Sbjct: 538 HNHDLGENHHLRVSFSK 554



 Score = 30.8 bits (68), Expect = 0.88
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P   I +  L   ++ D + +  S+ GT++K   F  + + QAL+Q+     A  A +  
Sbjct: 182 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL 241

Query: 150 HASKLEGS--TIRISFSQMQNI 91
               +  +  T+RI FS++ ++
Sbjct: 242 DGQNIYNACCTLRIDFSKLTSL 263



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -2

Query: 321 IIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHA 145
           ++ +S L+PE ++  ++      +  + + K+   + K  ALVQ     +A  A+   + 
Sbjct: 364 VLLVSNLNPERVTPQSLFILFGVYCDVQRVKIL-FNKKENALVQMADGSQAQLAMSHLNG 422

Query: 144 SKLEGSTIRISFSQMQNI 91
            KL G  +RI+ S+ QN+
Sbjct: 423 HKLHGKPVRITLSKHQNV 440

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+  +H+S + P ++ D +    +E G  VK+  F    +  AL+Q  S EEA +AL+  
Sbjct: 444 PSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIEL 503

Query: 150 HASKL-EGSTIRISFSQ 103
           H   L E   +R+SFS+
Sbjct: 504 HNHDLGENHHLRVSFSK 520



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P   I I  L   ++ + + +  S+ GT++K   F  + + QAL+Q+     A  A +  
Sbjct: 151 PVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMAL 210

Query: 150 HASKLEGS--TIRISFSQMQNI 91
               +  +  T+RI FS++ ++
Sbjct: 211 DGQNIYNACCTLRIDFSKLTSL 232



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 172
           P++++H+  +  +++E  +I      G +  + L    GK+QA ++  SEE A
Sbjct: 28  PSRVLHLRKIPCDVTEAEVISLGLPFGKV--TNLLMLKGKSQAFLEMASEEAA 78

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+  +H+S + P ++ D +    +E G  VK+  F    +  AL+Q  S EEA +AL+  
Sbjct: 444 PSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIEL 503

Query: 150 HASKL-EGSTIRISFSQ 103
           H   L E   +R+SFS+
Sbjct: 504 HNHDLGENHHLRVSFSK 520



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P   I I  L   ++ + + +  S+ GT++K   F  + + QAL+Q+     A  A +  
Sbjct: 151 PVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMAL 210

Query: 150 HASKLEGS--TIRISFSQMQNI 91
               +  +  T+RI FS++ ++
Sbjct: 211 DGQNIYNACCTLRIDFSKLTSL 232



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 172
           P++++H+  +  +++E  +I      G +  + L    GK+QA ++  SEE A
Sbjct: 28  PSRVLHLRKIPCDVTEAEVISLGLPFGKV--TNLLMLKGKSQAFLEMASEEAA 78

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>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2|
          Length = 429

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+K++H+  L  E +E+ +IE     GT+V +K    + + QA ++FE   +A + ++  
Sbjct: 16  PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQ-MISY 74

Query: 150 HASKLE-----GSTIRISFSQMQNI 91
           +AS  E     G T+ + +S  Q I
Sbjct: 75  YASSSEPAQVRGKTVYLQYSNRQEI 99



 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 291 ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEA 163
           +S D +    S  G + K   FE +   QALVQF   E AT A
Sbjct: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAA 167

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+  +H+S + P ++ D +     E G  VK+  F    +  AL+Q  S EEA +AL+  
Sbjct: 442 PSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIEL 501

Query: 150 HASKL-EGSTIRISFSQ 103
           H   L E   +R+SFS+
Sbjct: 502 HNHDLGENHHLRVSFSK 518



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P   I I  L   ++ + + +  S+ GT++K   F  + + QAL+Q+     A  A +  
Sbjct: 149 PVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMAL 208

Query: 150 HASKLEGS--TIRISFSQMQNI 91
               +  +  T+RI FS++ ++
Sbjct: 209 DGQNIYNACCTLRIDFSKLTSL 230



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 172
           P++++H+  +  +++E  II      G +  + L    GK+QA ++  SEE A
Sbjct: 26  PSRVLHLRKIPCDVTEAEIISLGLPFGKV--TNLLMLKGKSQAFLEMASEEAA 76

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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 22/75 (29%), Positives = 45/75 (60%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
           +K++ ++ LS   +ED++ E + E  T ++    +   K  A ++F S E+A +A+   +
Sbjct: 413 SKVLVVNNLSYSATEDSLRE-VFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCN 471

Query: 147 ASKLEGSTIRISFSQ 103
            +++EG +IR+ FSQ
Sbjct: 472 NTEIEGRSIRLEFSQ 486



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -2

Query: 225 EASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 106
           + S K  A V+F +E+EA +AL  K  +++EG +I + F+
Sbjct: 357 DGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFT 396

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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLFE---ASGKTQALVQFESEEEATEALVCKH 148
           +++  L P IS++ + E  S  GT+  SK+      + K    V F + EEATEA+    
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379

Query: 147 ASKLEGSTIRISFSQ 103
              +E   + ++ +Q
Sbjct: 380 GKMIESKPLYVAIAQ 394

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>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1|
          Length = 399

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P+K++H+  L  E  E+ +I+     G IV +K    + + QA V+F    +A  ++V  
Sbjct: 15  PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI-SMVSY 73

Query: 150 HAS-----KLEGSTIRISFSQMQNI 91
           +AS     ++ G T+ I +S    I
Sbjct: 74  YASSSEPAQIRGKTVYIQYSNRHEI 98



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -2

Query: 291 ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTI 121
           ++ D +    S +GT+ K  +FE +G TQAL+Q+    +   A + K A  LEG  I
Sbjct: 256 VTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQY---SDIPTAAMAKEA--LEGHCI 307



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = -2

Query: 300 SPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTI 121
           S E+S D I    S  G + K   FE +   QALVQF   E A+ A      S L+G +I
Sbjct: 121 SHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-----RSALDGRSI 175

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>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 21/84 (25%), Positives = 39/84 (46%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           PT  + +  LS  +S+  +  H   +G +VK       G   ALV +   E+A  A+   
Sbjct: 516 PTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKG--MALVLYSEIEDAQAAVKET 573

Query: 150 HASKLEGSTIRISFSQMQNI*QFF 79
              K+ G+ I++ F+  ++   F+
Sbjct: 574 KGRKIGGNKIKVDFANRESQLAFY 597

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>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKH 148
           I++  ++  ++E+ + +H S+ GTI  +KL  +  GK++    V F + EEA +A+   H
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365

Query: 147 ASKLEGSTIRISFSQ 103
                G  + ++ +Q
Sbjct: 366 GQMFHGKPLYVAIAQ 380

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEA 163
           PT  I++  +  +I +  + +  SEHG +V +++     SG+++    V   SE E +EA
Sbjct: 189 PTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEA 248

Query: 162 LVCKHASKLEGSTIRISFSQ 103
           +       L+G TIR++ ++
Sbjct: 249 IANLDGQTLDGRTIRVNAAE 268

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQA----LVQFESEEEATEALVCK 151
           ++I  L+  ++ + + +  SE G ++ +K+    G +++     V F SEEE   A+   
Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245

Query: 150 HASKLEGSTIRIS 112
           + S LEG  IR++
Sbjct: 246 NNSVLEGQKIRVN 258

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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVK-----SKLFEASGKTQALVQFESEEEATE 166
           PTK+ HI  L+  +++D I+E  S +G I        +      K  A V+FE+ EEA +
Sbjct: 137 PTKV-HIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEK 195

Query: 165 ALVCKHASKLEGSTIRIS 112
           AL      +++G  I  S
Sbjct: 196 ALKHMDGGQIDGQEITAS 213

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>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 35.8 bits (81), Expect = 0.027
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           PT  + +  LS  +S+  +  H   +G +VK       G   ALV +   E A  A+   
Sbjct: 515 PTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKG--MALVLYNEIEYAQAAVKET 572

Query: 150 HASKLEGSTIRISFSQMQNI*QFF 79
              K+ G+ I++ F+  ++   F+
Sbjct: 573 KGRKIGGNKIKVDFANRESQLAFY 596

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 22/74 (29%), Positives = 40/74 (54%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
           +K + ++ LS   SE+ + E   +  +I   +  +   K  A V+F + E+A EAL   +
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519

Query: 147 ASKLEGSTIRISFS 106
            +++EG  IR+ FS
Sbjct: 520 NTEIEGRAIRLEFS 533

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>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 34.7 bits (78), Expect = 0.061
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
 Frame = -2

Query: 324 KIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQ--ALVQFESEEEATEALV 157
           K + +  L  +++E  +IEH S+ GT+ K+++   + SGK +    V F++ + A +A V
Sbjct: 98  KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157

Query: 156 CK 151
            K
Sbjct: 158 VK 159

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>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat|
            protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182
            autoantigen) (GW1 protein) (EMSY interactor protein)
          Length = 1962

 Score = 34.7 bits (78), Expect = 0.061
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -2

Query: 327  TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
            T  + +  L+P+I    +     +HG ++   L    G   ALV++ S+EE  +A    H
Sbjct: 1780 TNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGN--ALVRYSSKEEVVKAQKSLH 1837

Query: 147  ASKLEGSTIRISFSQMQNI*QFFLE 73
               L  +TI   F+  + I +FF +
Sbjct: 1838 MCVLGNTTILAEFASEEEISRFFAQ 1862

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>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 387

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 179 SSLSNCTRACVLPLASNSFDLTMVPCSLRCSMIASSDISGESAEM 313
           +S++ C+R+ VLP  S      +VP S+    + SS + GES  M
Sbjct: 3   TSMACCSRSIVLPRVSPQHSSALVPSSINLKSLKSSSLFGESLRM 47

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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKL----FEASGKTQALVQFESEEEATEA 163
           P+  + +  LS     DAI E  ++HG +V  ++         K    VQF + E+A +A
Sbjct: 265 PSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324

Query: 162 LVCKHASKLEGSTIRISFS 106
           L       ++   +R+ FS
Sbjct: 325 LDALQGEYIDNRPVRLDFS 343

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 15/72 (20%), Positives = 35/72 (48%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASK 139
           +++  L  ++ E  + +   ++G I    +    G   A V+FE   +A +A+  +   +
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70

Query: 138 LEGSTIRISFSQ 103
            +G  IR+ F++
Sbjct: 71  FDGRRIRVEFTR 82

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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
           +K + +S LS   +E+ + E   +   I   +  +   K  A ++F S E+A EAL   +
Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCN 543

Query: 147 ASKLEGSTIRI 115
             ++EG TIR+
Sbjct: 544 KMEIEGRTIRL 554

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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCK 151
           +++  LS  + + A+ E  SE G +V +K+     SG+++    V + S +E  +A+   
Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268

Query: 150 HASKLEGSTIRISFSQMQNI*QF 82
           +   L+G +IR+S ++ +   QF
Sbjct: 269 NGVDLDGRSIRVSAAEERPRRQF 291

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIE-HLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVC 154
           P+K + +     + +    +E H   +G IV  ++     +  A +Q+E++E+AT AL  
Sbjct: 94  PSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRI----RRNFAFIQYEAQEDATRALDA 149

Query: 153 KHASKLEGSTIRISFS 106
            ++SKL    I + ++
Sbjct: 150 TNSSKLMDKVISVEYA 165

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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCK 151
           +++  LS  + + A+ E  SE G +V +K+     SG+++    V + S +E  +A+   
Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269

Query: 150 HASKLEGSTIRISFSQMQNI*QF 82
           +   L+G +IR+S ++ +   QF
Sbjct: 270 NGIDLDGRSIRVSAAEERPRRQF 292

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
 Frame = -2

Query: 285 EDAIIEHL-SEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCKHASKLEGSTI 121
           +DA +E L SEHG +V +++     +G+++    V   SE E ++A+       L+G TI
Sbjct: 242 DDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTI 301

Query: 120 RISFSQ 103
           R++ ++
Sbjct: 302 RVNVAE 307

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLFE--ASGKTQA--LVQFESEEEATEALVCK 151
           +++  L  ++SE  + E   + G +V + + +   +G+ Q    V+F SEE+A  A+   
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 150 HASKLEGSTIRISFSQMQN 94
           +  KL G  IR++ +   N
Sbjct: 75  NMIKLYGKPIRVNKASAHN 93

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>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 270 EHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 106
           +H   +G IV  ++     +  A +Q+E++E+AT AL   + SKL    I + ++
Sbjct: 116 KHFEPYGKIVNVRI----RRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166

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>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 321 IIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEAL 160
           ++H+  L   + E  ++E L + GTI    +     K QALV+FE+ + A E +
Sbjct: 126 VVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECV 177

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 321 IIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEAL 160
           ++H+  L   + E  ++E L + GTI    +     K QALV+FE+ + A E +
Sbjct: 77  VVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECV 128

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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 546

Query: 147 ASKLEGSTIRI 115
             ++EG TIR+
Sbjct: 547 KMEIEGRTIRL 557

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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVK-SKLFEASGKTQALVQFESEEEATEALVCK 151
           +K + +S LS   +++ + E + E  T +K  +      K  A ++F S E+A EAL   
Sbjct: 485 SKTLVLSNLSYSATKETL-EEVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSC 543

Query: 150 HASKLEGSTIRI 115
           +  ++EG TIR+
Sbjct: 544 NKMEIEGRTIRL 555

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>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic|
           region
          Length = 1140

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 110 KEILMVDPSSLLACLQTRASVASSSLSNCTRACVLPLASNSFDLTMVPCSLRCSMIASSD 289
           KE+     S + + L + +S ASS++S       LP +S    +T  P S       SS 
Sbjct: 217 KEVFSSSTSDVSSLLSSTSSPASSTISE-----TLPFSSTILSITSSPVSSEAPSATSSS 271

Query: 290 ISGESA 307
           +S E++
Sbjct: 272 VSSEAS 277

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>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast|
           precursor
          Length = 387

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -2

Query: 285 EDAIIEHLSEHGTIVKSKLFEASGKT-------QALVQFESEEEATEALVCKHASKLEGS 127
           ED +     ++GT+ +  +FE +          +  VQF   EE T+ALV        G 
Sbjct: 301 EDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGR 360

Query: 126 TIRISF 109
           T+R +F
Sbjct: 361 TVRATF 366

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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCK 151
           +++  LS  + + A+    SE G +V++++     SG+++    V ++S +E   A+   
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265

Query: 150 HASKLEGSTIRIS 112
             + L+G  IR+S
Sbjct: 266 DGADLDGRQIRVS 278

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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 544

Query: 147 ASKLEGSTIRI 115
             ++EG  IR+
Sbjct: 545 KREIEGRAIRL 555

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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545

Query: 147 ASKLEGSTIRI 115
             ++EG  IR+
Sbjct: 546 KREIEGRAIRL 556

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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEA 163
           P   +++  L  ++    + +  SEHG +V++++     +G+++    V     +E  EA
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301

Query: 162 LVCKHASKLEGSTIRISFSQ 103
           +       LEG  IR++ ++
Sbjct: 302 ISALDGQNLEGRAIRVNVAE 321

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>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQ--ALVQFESEEEATEAL 160
           TK +++S +  + +ED + E+ +++GT+ KS++   +A+ K +    V F+  +   + +
Sbjct: 113 TKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172

Query: 159 VCK 151
           + K
Sbjct: 173 LQK 175

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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 543

Query: 147 ASKLEGSTIRI 115
             ++EG  IR+
Sbjct: 544 KREIEGRAIRL 554

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>YKV4_YEAST (P36036) Hypothetical 23.8 kDa protein in URA1-DOA1 intergenic|
           region
          Length = 203

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = -2

Query: 324 KIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHA 145
           K I IS +  ++S+  + + + E G+ + SK+F+       + +FE  E   + +   + 
Sbjct: 64  KRIRISKIPLDVSDYTLDDMIKEFGSPIFSKIFDNKEDRTCIYEFEDPEVLEKIVERYNG 123

Query: 144 SKLEGSTIRISFSQMQ 97
            +L  + I +   Q Q
Sbjct: 124 HELHNAKIEVEIYQPQ 139

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>G6PI_AGABI (Q711G1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 551

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFE-----ASGKTQALVQFESEEEATEA 163
           TKII    ++P  S + I    S+H  I+ S  F      A GKT+  V+ E  + A+EA
Sbjct: 401 TKIIPADFMAPATSHNPIAN--SKHHRILLSNFFAQPEALAFGKTEEEVRKELGQNASEA 458

Query: 162 LV 157
           LV
Sbjct: 459 LV 460

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>GLGC_CLOCE (Q9L385) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)|
           (ADP-glucose synthase) (ADP-glucose pyrophosphorylase)
           (ADPGlc PPase)
          Length = 426

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCK 151
           P K  H  A S  + +  I E  S HGT++ S LF  +   +  V  +     + + VCK
Sbjct: 280 PVKPAHYIASSACVKKSIIAEGCSVHGTVINSILFPGAYIEEGAV-IQDSIIMSNSRVCK 338

Query: 150 HA 145
           +A
Sbjct: 339 NA 340

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>RL16_MYCPU (Q98PY9) 50S ribosomal protein L16|
          Length = 142

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 327 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQAL 199
           T +  +S + PE+++DA+   L+ H   VK ++ EAS K + +
Sbjct: 102 TMMFEVSGIKPEVAKDAL--RLAGHKLPVKWRIVEASPKEEVI 142

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>DXR_NITEU (Q82U01) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 413

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = -2

Query: 315 HISALSPEISEDAIIEHLSEH------GTIVKSKLFEASGKTQALVQFESEEEATEALVC 154
           H + L  +   +AI + L +H      G+ V+  L  ASG     V  +  E  T    C
Sbjct: 146 HATLLPIDSEHNAIFQSLPQHFNGDLAGSGVRRILLTASGGPFRTVDLKILETVTPEQAC 205

Query: 153 KHASKLEGSTIRISFSQMQN 94
            H + + G  I +  + M N
Sbjct: 206 AHPNWVMGRKISVDSATMMN 225

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>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = -2

Query: 324 KIIHISALSPEISEDAIIEHLSEHGTIVKSKL---FEASG-KTQALVQFESEEEATEALV 157
           +++++  L+ E+ +  +       G I   ++   +E    +  A V+FE  E+A  A+ 
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 156 CKHASKLEGSTIRISFSQMQNI 91
             + S+L G TIR++ ++   I
Sbjct: 66  NMNESELFGRTIRVNLAKPMRI 87

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>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = -2

Query: 324 KIIHISALSPEISEDAIIEHLSEHGTIVKSKL---FEASG-KTQALVQFESEEEATEALV 157
           +++++  L+ E+ +  +       G I   ++   +E    +  A V+FE  E+A  A+ 
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 156 CKHASKLEGSTIRISFSQMQNI 91
             + S+L G TIR++ ++   I
Sbjct: 66  NMNESELFGRTIRVNLAKPMRI 87

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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKL----FEASGKTQALVQFESEEEATEALVCK 151
           I++  L  ++SE  + E + + G +V   +      A+ +    V+F  EE+A  A+   
Sbjct: 15  IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74

Query: 150 HASKLEGSTIRIS 112
           +  KL G  I+++
Sbjct: 75  NMIKLYGKPIKVN 87

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>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVK-SKLFEASGKTQ---ALVQFESEEEATEA 163
           P   + +  LS   +E  + E  S++G I   S +++   +     A V FE+ ++A EA
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175

Query: 162 LVCKHASKLEGSTIRISFS 106
               +  +L+G  IR+ FS
Sbjct: 176 KERANGMELDGRRIRVDFS 194

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>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVK-SKLFEASGKTQ---ALVQFESEEEATEA 163
           P   + +  LS   +E  + E  S++G I   S +++   +     A V FE+ ++A EA
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175

Query: 162 LVCKHASKLEGSTIRISFS 106
               +  +L+G  IR+ FS
Sbjct: 176 KERANGMELDGRRIRVDFS 194

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>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVK-SKLFEASGKTQ---ALVQFESEEEATEA 163
           P   + +  LS   +E  + E  S++G I   S +++   +     A V FE+ ++A EA
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175

Query: 162 LVCKHASKLEGSTIRISFS 106
               +  +L+G  IR+ FS
Sbjct: 176 KERANGMELDGRRIRVDFS 194

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>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASK 139
           + I  LS  ++ED +  +    GTIV  K+    GK    VQ+     A  A+       
Sbjct: 315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKI--PVGKCCGFVQYVDRLSAEAAIAGMQGFP 372

Query: 138 LEGSTIRISFSQ 103
           +  S +R+S+ +
Sbjct: 373 IANSRVRLSWGR 384

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>DNE21_RHIME (Q92LA6) Error-prone DNA polymerase 1 (EC 2.7.7.7)|
          Length = 1116

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 73  FQEELLYVLHLGERNPNGGSLE-LARMLTDQSFGRLFLALELH 198
           +QEELL ++  GE  P   SLE L   L + +  RL+L L  H
Sbjct: 119 WQEELLLIVMQGEGRPEPESLEVLLGTLKEHAGNRLYLGLAPH 161

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>LRC57_XENLA (Q6INV3) Leucine-rich repeat-containing protein 57|
          Length = 238

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 155 QTRASVASSSLSNCTRACVLPLASNSFDLTMVPCSL 262
           Q + S  S ++S+C R  VL L  N  +L+M+P S+
Sbjct: 161 QNQISQISVNISHCPRLKVLRLEENCLELSMLPPSI 196

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>CSD_SYNY3 (Q55793) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 420

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEE 175
           +H S ++  + +D I      H T    +LF+ASG  +A + F + +E
Sbjct: 350 LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKE 397

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>Y1386_PASMU (Q9CL57) Hypothetical protein PM1386|
          Length = 112

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 149 CLQTRASVASSSLSNCTRACVLPLASNSFDLTMVPC 256
           C    + V  SS +NC     L LAS S   +++PC
Sbjct: 34  CTSNSSRVTKSSFANCACNVCLSLASASCPKSLIPC 69

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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTI--VKSKLFEASGKTQALVQFE-SEEEATEAL 160
           P K I +  L+PE +E+ I E+  + G I  ++  +     K +  V     EE+  + +
Sbjct: 157 PVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216

Query: 159 VCKHASKLEGSTIRISFSQMQNI*Q 85
           + K    + GS   I  +Q + + Q
Sbjct: 217 LEKKFHTVSGSKCEIKVAQPKEVYQ 241

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>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTI-----VKSKLFEASGKTQALVQFESEEEATEALVC 154
           + I  L+ E +ED + +  +++G I     VK +  + S +    V FE+ ++A +A++ 
Sbjct: 7   LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRS-RGFGFVTFENVDDAKDAMMA 65

Query: 153 KHASKLEGSTIRI 115
            +   ++G  IR+
Sbjct: 66  MNGKSVDGRQIRV 78

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 324 KIIHISALSPEIS-EDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
           ++ ++ A S + S +D +     +HG +   K+   + +  ALV F+  ++  +AL   H
Sbjct: 557 RVRNLPARSSDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSH 616

Query: 147 ASKLEGSTIRI 115
                G  I +
Sbjct: 617 DKHFFGCKIEV 627

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>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQ----ALVQFESEEEATEA 163
           P+ ++H      E++E+   E   E G    S +   SGK++     L+++ES+ +A E 
Sbjct: 468 PSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALET 527

Query: 162 L 160
           L
Sbjct: 528 L 528

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>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLFE--ASGKTQ--ALVQFESEEEATEALVCK 151
           + I  L+ E +E A+     ++G IV+  L +   + K++  A V FES  +A +A    
Sbjct: 10  LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 150 HASKLEGSTIRI 115
           +   L+G  I++
Sbjct: 70  NGKSLDGKAIKV 81

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>RPOA_MYCH7 (Q4A8J7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 332

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = -2

Query: 291 ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRI- 115
           ++ D  I  +S+ G + K +LF  +GK    V FE+ ++    ++ +  S++EGS + + 
Sbjct: 127 VNPDLYIADVSKVGAL-KFELFITNGK--GFVDFETNKKYVNEVISRLESQIEGSVLAVD 183

Query: 114 -SFSQMQN 94
             FS + N
Sbjct: 184 SDFSPVLN 191

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>VIP1_SCHPO (P87216) Protein vip1|
          Length = 257

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 312 ISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQ-ALVQFESEEEATEALVCKHA 145
           ++ +SPE++E  I +  S  G  V +   E SG+TQ A +QFE       AL+ + A
Sbjct: 7   VTNISPEVTEKQISDFFSFCGK-VSNISTEKSGETQTAKIQFERPSATKTALLLQDA 62

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>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1338

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -2

Query: 327  TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
            + I+HIS L    +   + E L   GT+V+   +    K+   V + + EEA       H
Sbjct: 1010 SNIVHISNLVRPFTLGQLKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALH 1069

Query: 147  ASK 139
              K
Sbjct: 1070 GVK 1072

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>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1341

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -2

Query: 327  TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 148
            + I+HIS L    +   + E L   GT+V+   +    K+   V + + EEA       H
Sbjct: 1011 SNIVHISNLVRPFTLGQLKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALH 1070

Query: 147  ASK 139
              K
Sbjct: 1071 GVK 1073

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>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTI-----VKSKLFEASGKTQALVQFESEEEATEALVC 154
           + +  LS + +E A+ +  S++G I     VK +  + S +    V FE+ ++A +A++ 
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRS-RGFGFVTFENIDDAKDAMMA 66

Query: 153 KHASKLEGSTIRI 115
            +   ++G  IR+
Sbjct: 67  MNGKSVDGRQIRV 79

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>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTI-----VKSKLFEASGKTQALVQFESEEEATEALVC 154
           + +  LS + +E A+ +  S++G I     VK +  + S +    V FE+ ++A +A++ 
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRS-RGFGFVTFENIDDAKDAMMA 66

Query: 153 KHASKLEGSTIRI 115
            +   ++G  IR+
Sbjct: 67  MNGKSVDGRQIRV 79

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>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTI-----VKSKLFEASGKTQALVQFESEEEATEALVC 154
           + +  LS + +E A+ +  S++G I     VK +  + S +    V FE+ ++A +A++ 
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRS-RGFGFVTFENIDDAKDAMMA 66

Query: 153 KHASKLEGSTIRI 115
            +   ++G  IR+
Sbjct: 67  MNGKSVDGRQIRV 79

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>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFE----ASGKTQALVQFESEEEATEA 163
           P  ++ +  L+P   ++ +    S  GTI+  ++            A ++FE++++  +A
Sbjct: 246 PENVLFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQA 305

Query: 162 LVCKHASKLEGSTIRISFSQ 103
                   ++   I + FSQ
Sbjct: 306 YFKMQGVLIDDHRIHVDFSQ 325

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>RUMA_BORPE (Q7VXM6) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 466

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKS----KLFEASGKTQALVQFESEEEAT 169
           P +I+++S     ++ DA I  + E G  ++S     +F  +G  +++  FES +EAT
Sbjct: 385 PRRIVYVSCSPGTLARDAAIM-VHEGGYALRSAGVINMFPHTGHVESIAVFESLDEAT 441

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>CEND1_MOUSE (Q8BZ05) Centaurin-delta 1 (Cnt-d1)|
          Length = 1703

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 80   KNCYMFCIWEKEILMVDPSSLLACLQTR 163
            K+C+    W K    +D SSL  CLQT+
Sbjct: 1022 KDCHALDQWRKGWFAMDKSSLCFCLQTQ 1049

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>YBY1_SCHPO (Q10200) Hypothetical protein C11C11.01 in chromosome II|
          Length = 493

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGK-TQALVQFESEEEATEALVCKHAS 142
           +H+  +SP  +  ++ E L ++ +I+   +F  +G   + +  F+   +A +A+      
Sbjct: 137 VHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKKGIAIFQDLSDAEQAVQYLSNC 196

Query: 141 KLEGSTI 121
           K++G  I
Sbjct: 197 KIDGRLI 203

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>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTI--VKSKLFEASGKTQ--ALVQFESEEEATEA 163
           P   + +  LS   +E  + E  S +G +  V     + +G+++  A V FE  +++ EA
Sbjct: 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174

Query: 162 LVCKHASKLEGSTIRISFS 106
           +   +  +L+G  IR+ +S
Sbjct: 175 MERANGMELDGRRIRVDYS 193

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>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTI--VKSKLFEASGKTQ--ALVQFESEEEATEA 163
           P   + +  LS   +E  + E  S +G +  V     + +G+++  A V FE  +++ EA
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176

Query: 162 LVCKHASKLEGSTIRISFS 106
           +   +  +L+G  IR+ +S
Sbjct: 177 MERANGMELDGRRIRVDYS 195

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>RUMA_BORPA (Q7W676) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 466

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKS----KLFEASGKTQALVQFESEEEAT 169
           P +I+++S     ++ DA I  + E G  ++S     +F  +G  +++  FES +EAT
Sbjct: 385 PRRIVYVSCNPGTLARDAAIM-VHEGGYALRSAGVINMFPHTGHVESIAVFESLDEAT 441

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>RUMA_BORBR (Q7WI42) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 466

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 330 PTKIIHISALSPEISEDAIIEHLSEHGTIVKS----KLFEASGKTQALVQFESEEEAT 169
           P +I+++S     ++ DA I  + E G  ++S     +F  +G  +++  FES +EAT
Sbjct: 385 PRRIVYVSCNPGTLARDAAIM-VHEGGYALRSAGVINMFPHTGHVESIAVFESLDEAT 441

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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = -2

Query: 318 IHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCK 151
           +++  LS  + + A+    +E G +V++++     SG+++    V   S +E  +A+   
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318

Query: 150 HASKLEGSTIRIS 112
           + + L+G  IR+S
Sbjct: 319 NGADLDGRQIRVS 331


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,691,212
Number of Sequences: 219361
Number of extensions: 680351
Number of successful extensions: 2079
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 2003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2073
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result