ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25c10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05, complete sequence Length = 109126 Score = 81.8 bits (41), Expect = 1e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 ||||||| |||||||||||||||| || ||||| || ||| ||||| ||| | | || Sbjct: 57712 ctatatgctctgcatctgggagaatgagatcctgatcgtgttaccctccagcgaggtggc 57771 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||| || | || || |||||||||||||| || |||||||||||||| | ||| ||||| Sbjct: 57772 atgttttgatacaagggcttcggtcgcctcctcttcgctctcgaactggatgagcgcctg 57831 Query: 208 cgtcttgccgctcgcctcaaacagctttg 236 | |||||||| || ||||||||||||||| Sbjct: 57832 cctcttgccgttcacctcaaacagctttg 57860
>ref|XM_475305.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 81.8 bits (41), Expect = 1e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 ||||||| |||||||||||||||| || ||||| || ||| ||||| ||| | | || Sbjct: 1170 ctatatgctctgcatctgggagaatgagatcctgatcgtgttaccctccagcgaggtggc 1111 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||| || | || || |||||||||||||| || |||||||||||||| | ||| ||||| Sbjct: 1110 atgttttgatacaagggcttcggtcgcctcctcttcgctctcgaactggatgagcgcctg 1051 Query: 208 cgtcttgccgctcgcctcaaacagctttg 236 | |||||||| || ||||||||||||||| Sbjct: 1050 cctcttgccgttcacctcaaacagctttg 1022
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 1e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 ||||||| |||||||||||||||| || ||||| || ||| ||||| ||| | | || Sbjct: 21271106 ctatatgctctgcatctgggagaatgagatcctgatcgtgttaccctccagcgaggtggc 21271165 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||| || | || || |||||||||||||| || |||||||||||||| | ||| ||||| Sbjct: 21271166 atgttttgatacaagggcttcggtcgcctcctcttcgctctcgaactggatgagcgcctg 21271225 Query: 208 cgtcttgccgctcgcctcaaacagctttg 236 | |||||||| || ||||||||||||||| Sbjct: 21271226 cctcttgccgttcacctcaaacagctttg 21271254
>dbj|AK102760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107C19, full insert sequence Length = 1934 Score = 81.8 bits (41), Expect = 1e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 ||||||| |||||||||||||||| || ||||| || ||| ||||| ||| | | || Sbjct: 1610 ctatatgctctgcatctgggagaatgagatcctgatcgtgttaccctccagcgaggtggc 1551 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||| || | || || |||||||||||||| || |||||||||||||| | ||| ||||| Sbjct: 1550 atgttttgatacaagggcttcggtcgcctcctcttcgctctcgaactggatgagcgcctg 1491 Query: 208 cgtcttgccgctcgcctcaaacagctttg 236 | |||||||| || ||||||||||||||| Sbjct: 1490 cctcttgccgttcacctcaaacagctttg 1462
>ref|NM_190764.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1995 Score = 58.0 bits (29), Expect = 2e-05 Identities = 137/173 (79%) Strand = Plus / Minus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 |||||| ||||||||||| ||||| |||||||| ||| ||| || || |||||||| || Sbjct: 1995 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 1936 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||||| || || || || || ||||||||| |||| || ||| |||| || ||||| Sbjct: 1935 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 1876 Query: 208 cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 260 ||| |||||| ||| ||| ||||| |||| ||| |||| || |||||||||| Sbjct: 1875 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 1823 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 aagcgctgagatgtggatgatcttggt 327 |||||||||||||||||| |||||||| Sbjct: 1782 aagcgctgagatgtggatcatcttggt 1756
>gb|BT018463.1| Zea mays clone EL01N0417C03.d mRNA sequence Length = 1476 Score = 58.0 bits (29), Expect = 2e-05 Identities = 98/121 (80%) Strand = Plus / Minus Query: 96 tctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgcatgcttac 155 ||||||||||||||||||| |||| || ||| ||||||||| |||| |||||||| Sbjct: 1219 tctgcatctgggagaaagagatccggatcgtgttaccctcgagcgtgctggcatgctttg 1160 Query: 156 agaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctgcgtcttgc 215 | || || || ||||| ||||| || |||||||||||| | |||||||||| |||||| Sbjct: 1159 acacgagggcctcggtagcctcctcttcgctctcgaacaaaatgagagcctgcctcttgc 1100 Query: 216 c 216 | Sbjct: 1099 c 1099
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 2e-05 Identities = 137/173 (79%) Strand = Plus / Minus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 |||||| ||||||||||| ||||| |||||||| ||| ||| || || |||||||| || Sbjct: 37577810 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 37577751 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||||| || || || || || ||||||||| |||| || ||| |||| || ||||| Sbjct: 37577750 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 37577691 Query: 208 cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 260 ||| |||||| ||| ||| ||||| |||| ||| |||| || |||||||||| Sbjct: 37577690 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 37577638 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 aagcgctgagatgtggatgatcttggt 327 |||||||||||||||||| |||||||| Sbjct: 37577597 aagcgctgagatgtggatcatcttggt 37577571
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 58.0 bits (29), Expect = 2e-05 Identities = 137/173 (79%) Strand = Plus / Minus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 |||||| ||||||||||| ||||| |||||||| ||| ||| || || |||||||| || Sbjct: 38284 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 38225 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||||| || || || || || ||||||||| |||| || ||| |||| || ||||| Sbjct: 38224 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 38165 Query: 208 cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 260 ||| |||||| ||| ||| ||||| |||| ||| |||| || |||||||||| Sbjct: 38164 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 38112 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 aagcgctgagatgtggatgatcttggt 327 |||||||||||||||||| |||||||| Sbjct: 38071 aagcgctgagatgtggatcatcttggt 38045
>dbj|AK069062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006N01, full insert sequence Length = 1760 Score = 58.0 bits (29), Expect = 2e-05 Identities = 137/173 (79%) Strand = Plus / Minus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 |||||| ||||||||||| ||||| |||||||| ||| ||| || || |||||||| || Sbjct: 1475 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 1416 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||||| || || || || || ||||||||| |||| || ||| |||| || ||||| Sbjct: 1415 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 1356 Query: 208 cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 260 ||| |||||| ||| ||| ||||| |||| ||| |||| || |||||||||| Sbjct: 1355 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 1303 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 aagcgctgagatgtggatgatcttggt 327 |||||||||||||||||| |||||||| Sbjct: 1262 aagcgctgagatgtggatcatcttggt 1236
>dbj|AK066622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070J15, full insert sequence Length = 1641 Score = 58.0 bits (29), Expect = 2e-05 Identities = 137/173 (79%) Strand = Plus / Minus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 |||||| ||||||||||| ||||| |||||||| ||| ||| || || |||||||| || Sbjct: 1356 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 1297 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||||| || || || || || ||||||||| |||| || ||| |||| || ||||| Sbjct: 1296 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 1237 Query: 208 cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 260 ||| |||||| ||| ||| ||||| |||| ||| |||| || |||||||||| Sbjct: 1236 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 1184 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 aagcgctgagatgtggatgatcttggt 327 |||||||||||||||||| |||||||| Sbjct: 1143 aagcgctgagatgtggatcatcttggt 1117
>dbj|AK062260.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G12, full insert sequence Length = 1088 Score = 58.0 bits (29), Expect = 2e-05 Identities = 137/173 (79%) Strand = Plus / Minus Query: 88 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 147 |||||| ||||||||||| ||||| |||||||| ||| ||| || || |||||||| || Sbjct: 933 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 874 Query: 148 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 207 ||||| || || || || || ||||||||| |||| || ||| |||| || ||||| Sbjct: 873 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 814 Query: 208 cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 260 ||| |||||| ||| ||| ||||| |||| ||| |||| || |||||||||| Sbjct: 813 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 761 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 aagcgctgagatgtggatgatcttggt 327 |||||||||||||||||| |||||||| Sbjct: 720 aagcgctgagatgtggatcatcttggt 694
>gb|AY105722.1| Zea mays PCO067271 mRNA sequence Length = 1012 Score = 58.0 bits (29), Expect = 2e-05 Identities = 98/121 (80%) Strand = Plus / Minus Query: 96 tctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgcatgcttac 155 ||||||||||||||||||| |||| || ||| ||||||||| |||| |||||||| Sbjct: 709 tctgcatctgggagaaagagatccggatcgtgttaccctcgagcgtgctggcatgctttg 650 Query: 156 agaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctgcgtcttgc 215 | || || || ||||| ||||| || |||||||||||| | |||||||||| |||||| Sbjct: 649 acacgagggcctcggtagcctcctcttcgctctcgaacaaaatgagagcctgcctcttgc 590 Query: 216 c 216 | Sbjct: 589 c 589
>gb|AF022814.1|AF022814 Fugu rubripes transcription factor (SLP-1) and heme-oxygenase genes, complete cds Length = 37400 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 tcgcctcttcctcgctctcga 191 ||||||||||||||||||||| Sbjct: 20030 tcgcctcttcctcgctctcga 20010
>gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, complete sequence Length = 167144 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 tctgcatctgggagaaagaaa 116 ||||||||||||||||||||| Sbjct: 120723 tctgcatctgggagaaagaaa 120703
>ref|XM_594731.2| PREDICTED: Bos taurus similar to axonemal dynein heavy chain 7 (LOC516576), mRNA Length = 7305 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggagaaagaaatcctaatgg 125 |||||||||||||||||||| Sbjct: 2688 ggagaaagaaatcctaatgg 2707 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggagaaagaaatcctaatgg 125 |||||||||||||||||||| Sbjct: 1599 ggagaaagaaatcctaatgg 1618
>gb|AY861243.1| Cottus gobio microsatellite CottE2 sequence Length = 613 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cttcggtcgcctcttcctcg 184 |||||||||||||||||||| Sbjct: 558 cttcggtcgcctcttcctcg 539 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,373,090 Number of Sequences: 3902068 Number of extensions: 2373090 Number of successful extensions: 39384 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39322 Number of HSP's gapped (non-prelim): 60 length of query: 331 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 309 effective length of database: 17,147,199,772 effective search space: 5298484729548 effective search space used: 5298484729548 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
