ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24n07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC150408.2| Branchiostoma floridae clone CH302-56A5, complete... 44 0.22
2ref|XM_483759.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.22
3ref|XM_507333.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.22
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
5dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
6dbj|AK104800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.22
7dbj|AK066924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.22
8gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Can... 42 0.87
9gb|AC153933.3| Mus musculus 10 BAC RP24-282I24 (Roswell Park Can... 42 0.87
10gb|AC145291.2| Homo sapiens chromosome 8, clone XXfos-82799H6, c... 40 3.4
11emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 i... 40 3.4
12gb|BC033964.1| Homo sapiens cDNA clone IMAGE:5287919 40 3.4
13gb|AC110280.8| Homo sapiens chromosome 8, clone CTD-3232M19, com... 40 3.4
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
16gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) ch... 40 3.4
17gb|AC155822.2| Mus musculus BAC clone RP23-319J10 from chromosom... 40 3.4
18gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 40 3.4
19dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
20dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4

>gb|AC150408.2| Branchiostoma floridae clone CH302-56A5, complete sequence
          Length = 180427

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 18    ctttccacaaagcttacacaag 39
             ||||||||||||||||||||||
Sbjct: 66939 ctttccacaaagcttacacaag 66960



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>ref|XM_483759.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1144

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264
           |||||||||||||||||| |||||  || |||||||||
Sbjct: 871 tctagcacttgaagcccccgcaaataatcagccagagg 834



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>ref|XM_507333.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.8 mRNA
          Length = 1187

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264
           |||||||||||||||||| |||||  || |||||||||
Sbjct: 914 tctagcacttgaagcccccgcaaataatcagccagagg 877



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 227      tctagcacttgaagcccctgcaaaccattagccagagg 264
                |||||||||||||||||| |||||  || |||||||||
Sbjct: 27949345 tctagcacttgaagcccccgcaaataatcagccagagg 27949382



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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0562A06
          Length = 154198

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 227   tctagcacttgaagcccctgcaaaccattagccagagg 264
             |||||||||||||||||| |||||  || |||||||||
Sbjct: 26837 tctagcacttgaagcccccgcaaataatcagccagagg 26874



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>dbj|AK104800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A08, full
           insert sequence
          Length = 1144

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264
           |||||||||||||||||| |||||  || |||||||||
Sbjct: 871 tctagcacttgaagcccccgcaaataatcagccagagg 834



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>dbj|AK066924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D14, full
           insert sequence
          Length = 1188

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264
           |||||||||||||||||| |||||  || |||||||||
Sbjct: 915 tctagcacttgaagcccccgcaaataatcagccagagg 878



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>gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217393

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 181    agaacatcaaatgacaaggaaaaaa 205
              ||||||||||||| |||||||||||
Sbjct: 193368 agaacatcaaatggcaaggaaaaaa 193344



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>gb|AC153933.3| Mus musculus 10 BAC RP24-282I24 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 179847

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 181   agaacatcaaatgacaaggaaaaaa 205
             ||||||||||||| |||||||||||
Sbjct: 82856 agaacatcaaatggcaaggaaaaaa 82832



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>gb|AC145291.2| Homo sapiens chromosome 8, clone XXfos-82799H6, complete sequence
          Length = 41721

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   gacacagtaaacagaacatcaaat 192
             |||||||||||||| |||||||||
Sbjct: 33820 gacacagtaaacagcacatcaaat 33843



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>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
              complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    aacatagggaaagcataatt 143
              ||||||||||||||||||||
Sbjct: 121081 aacatagggaaagcataatt 121062



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>gb|BC033964.1| Homo sapiens cDNA clone IMAGE:5287919
          Length = 1091

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 169 gacacagtaaacagaacatcaaat 192
           |||||||||||||| |||||||||
Sbjct: 20  gacacagtaaacagcacatcaaat 43



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>gb|AC110280.8| Homo sapiens chromosome 8, clone CTD-3232M19, complete sequence
          Length = 91099

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   gacacagtaaacagaacatcaaat 192
             |||||||||||||| |||||||||
Sbjct: 26954 gacacagtaaacagcacatcaaat 26931



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 157      atgcatgcacatgacacagt 176
                ||||||||||||||||||||
Sbjct: 14266723 atgcatgcacatgacacagt 14266742



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 196      aaggaaaaaagggcgaatga 215
                ||||||||||||||||||||
Sbjct: 21357108 aaggaaaaaagggcgaatga 21357089



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>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13,
             complete sequence
          Length = 138245

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atgcatgcacatgacacagt 176
             ||||||||||||||||||||
Sbjct: 13998 atgcatgcacatgacacagt 14017



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>gb|AC155822.2| Mus musculus BAC clone RP23-319J10 from chromosome 16, complete sequence
          Length = 192526

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 186    atcaaatgacaaggaaaaaagggc 209
              |||||||||||| |||||||||||
Sbjct: 103196 atcaaatgacaaagaaaaaagggc 103219



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>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10,
              complete sequence
          Length = 142737

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    atgcatgcacatgacacagt 176
              ||||||||||||||||||||
Sbjct: 138796 atgcatgcacatgacacagt 138815



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>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0435E12
          Length = 143188

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    aaggaaaaaagggcgaatga 215
              ||||||||||||||||||||
Sbjct: 139643 aaggaaaaaagggcgaatga 139624



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>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1712_E04
          Length = 110098

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   aaggaaaaaagggcgaatga 215
             ||||||||||||||||||||
Sbjct: 17061 aaggaaaaaagggcgaatga 17042



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 157      atgcatgcacatgacacagt 176
                ||||||||||||||||||||
Sbjct: 14274965 atgcatgcacatgacacagt 14274984


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,143,729
Number of Sequences: 3902068
Number of extensions: 2143729
Number of successful extensions: 45405
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45338
Number of HSP's gapped (non-prelim): 67
length of query: 264
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 242
effective length of database: 17,147,199,772
effective search space: 4149622344824
effective search space used: 4149622344824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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