Clone Name | rbasd24n07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC150408.2| Branchiostoma floridae clone CH302-56A5, complete sequence Length = 180427 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 18 ctttccacaaagcttacacaag 39 |||||||||||||||||||||| Sbjct: 66939 ctttccacaaagcttacacaag 66960
>ref|XM_483759.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1144 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Minus Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264 |||||||||||||||||| ||||| || ||||||||| Sbjct: 871 tctagcacttgaagcccccgcaaataatcagccagagg 834
>ref|XM_507333.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.8 mRNA Length = 1187 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Minus Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264 |||||||||||||||||| ||||| || ||||||||| Sbjct: 914 tctagcacttgaagcccccgcaaataatcagccagagg 877
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Plus Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264 |||||||||||||||||| ||||| || ||||||||| Sbjct: 27949345 tctagcacttgaagcccccgcaaataatcagccagagg 27949382
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Plus Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264 |||||||||||||||||| ||||| || ||||||||| Sbjct: 26837 tctagcacttgaagcccccgcaaataatcagccagagg 26874
>dbj|AK104800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A08, full insert sequence Length = 1144 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Minus Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264 |||||||||||||||||| ||||| || ||||||||| Sbjct: 871 tctagcacttgaagcccccgcaaataatcagccagagg 834
>dbj|AK066924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D14, full insert sequence Length = 1188 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Minus Query: 227 tctagcacttgaagcccctgcaaaccattagccagagg 264 |||||||||||||||||| ||||| || ||||||||| Sbjct: 915 tctagcacttgaagcccccgcaaataatcagccagagg 878
>gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217393 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Minus Query: 181 agaacatcaaatgacaaggaaaaaa 205 ||||||||||||| ||||||||||| Sbjct: 193368 agaacatcaaatggcaaggaaaaaa 193344
>gb|AC153933.3| Mus musculus 10 BAC RP24-282I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179847 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Minus Query: 181 agaacatcaaatgacaaggaaaaaa 205 ||||||||||||| ||||||||||| Sbjct: 82856 agaacatcaaatggcaaggaaaaaa 82832
>gb|AC145291.2| Homo sapiens chromosome 8, clone XXfos-82799H6, complete sequence Length = 41721 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 gacacagtaaacagaacatcaaat 192 |||||||||||||| ||||||||| Sbjct: 33820 gacacagtaaacagcacatcaaat 33843
>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25, complete sequence Length = 136578 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 aacatagggaaagcataatt 143 |||||||||||||||||||| Sbjct: 121081 aacatagggaaagcataatt 121062
>gb|BC033964.1| Homo sapiens cDNA clone IMAGE:5287919 Length = 1091 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 gacacagtaaacagaacatcaaat 192 |||||||||||||| ||||||||| Sbjct: 20 gacacagtaaacagcacatcaaat 43
>gb|AC110280.8| Homo sapiens chromosome 8, clone CTD-3232M19, complete sequence Length = 91099 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 gacacagtaaacagaacatcaaat 192 |||||||||||||| ||||||||| Sbjct: 26954 gacacagtaaacagcacatcaaat 26931
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 atgcatgcacatgacacagt 176 |||||||||||||||||||| Sbjct: 14266723 atgcatgcacatgacacagt 14266742
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aaggaaaaaagggcgaatga 215 |||||||||||||||||||| Sbjct: 21357108 aaggaaaaaagggcgaatga 21357089
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 atgcatgcacatgacacagt 176 |||||||||||||||||||| Sbjct: 13998 atgcatgcacatgacacagt 14017
>gb|AC155822.2| Mus musculus BAC clone RP23-319J10 from chromosome 16, complete sequence Length = 192526 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 atcaaatgacaaggaaaaaagggc 209 |||||||||||| ||||||||||| Sbjct: 103196 atcaaatgacaaagaaaaaagggc 103219
>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10, complete sequence Length = 142737 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 atgcatgcacatgacacagt 176 |||||||||||||||||||| Sbjct: 138796 atgcatgcacatgacacagt 138815
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aaggaaaaaagggcgaatga 215 |||||||||||||||||||| Sbjct: 139643 aaggaaaaaagggcgaatga 139624
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aaggaaaaaagggcgaatga 215 |||||||||||||||||||| Sbjct: 17061 aaggaaaaaagggcgaatga 17042
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 atgcatgcacatgacacagt 176 |||||||||||||||||||| Sbjct: 14274965 atgcatgcacatgacacagt 14274984 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,143,729 Number of Sequences: 3902068 Number of extensions: 2143729 Number of successful extensions: 45405 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45338 Number of HSP's gapped (non-prelim): 67 length of query: 264 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 242 effective length of database: 17,147,199,772 effective search space: 4149622344824 effective search space used: 4149622344824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)