ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474079.1| Oryza sativa (japonica cultivar-group), predic... 50 0.001
2emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 50 0.001
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.001
4dbj|AK069061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
5emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 50 0.001
6emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 50 0.001
7gb|AY111946.1| Zea mays CL296_1 mRNA sequence 42 0.34
8gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosom... 40 1.3
9emb|AL772396.7| Zebrafish DNA sequence from clone CH211-253F14, ... 40 1.3
10gb|AC149783.2| Bos taurus BAC CH240-3K17 (Children's Hospital O... 38 5.3
11emb|BX530066.21| Zebrafish DNA sequence from clone DKEY-48C13 in... 38 5.3
12emb|CR933103.10| Zebrafish DNA sequence from clone CH211-147G15 ... 38 5.3
13emb|AL596168.1| Listeria innocua Clip11262 complete genome, segm... 38 5.3
14gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete se... 38 5.3
15gb|AC008276.4| Homo sapiens BAC clone RP11-297I3 from 2, complet... 38 5.3
16gb|AC132145.3| Mus musculus BAC clone RP23-44H21 from chromosome... 38 5.3
17gb|AC112984.21| Mus musculus chromosome 18, clone RP24-185P1, co... 38 5.3 
>ref|XM_474079.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2196

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 80   gcaagatagcggtagagcttcctatctaccttgtccc 116
            |||||||| ||||| | ||||||||||||||||||||
Sbjct: 2192 gcaagataacggtacatcttcctatctaccttgtccc 2156
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>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
              complete sequence
          Length = 150416

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 80     gcaagatagcggtagagcttcctatctaccttgtccc 116
              |||||||| ||||| | ||||||||||||||||||||
Sbjct: 123891 gcaagataacggtacatcttcctatctaccttgtccc 123855
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 80       gcaagatagcggtagagcttcctatctaccttgtccc 116
                |||||||| ||||| | ||||||||||||||||||||
Sbjct: 32764458 gcaagataacggtacatcttcctatctaccttgtccc 32764422
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>dbj|AK069061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008J21, full
            insert sequence
          Length = 2584

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 80   gcaagatagcggtagagcttcctatctaccttgtccc 116
            |||||||| ||||| | ||||||||||||||||||||
Sbjct: 2370 gcaagataacggtacatcttcctatctaccttgtccc 2334
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>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete
             sequence
          Length = 91539

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 80    gcaagatagcggtagagcttcctatctaccttgtccc 116
             |||||||| ||||| | ||||||||||||||||||||
Sbjct: 34708 gcaagataacggtacatcttcctatctaccttgtccc 34672
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>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 80    gcaagatagcggtagagcttcctatctaccttgtccc 116
             |||||||| ||||| | ||||||||||||||||||||
Sbjct: 26748 gcaagataacggtacatcttcctatctaccttgtccc 26712
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>gb|AY111946.1| Zea mays CL296_1 mRNA sequence
          Length = 1397

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 80   gcaagatagcggtagagcttcctatctaccttgtccc 116
            |||||||||||||| | |||||| || ||||||||||
Sbjct: 1107 gcaagatagcggtacatcttcctgtccaccttgtccc 1071
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>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence
          Length = 198721

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     atggtttttgttcattcgttcatg 40
              ||||||||||||||||| ||||||
Sbjct: 140755 atggtttttgttcattctttcatg 140778
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>emb|AL772396.7| Zebrafish DNA sequence from clone CH211-253F14, complete sequence
          Length = 148465

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     gtttttgttcattcgttcat 39
              ||||||||||||||||||||
Sbjct: 136222 gtttttgttcattcgttcat 136241
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>gb|AC149783.2| Bos taurus  BAC CH240-3K17 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 205084

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    ttcgttcatggacagtcta 49
             |||||||||||||||||||
Sbjct: 61899 ttcgttcatggacagtcta 61881
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>emb|BX530066.21| Zebrafish DNA sequence from clone DKEY-48C13 in linkage group 24,
             complete sequence
          Length = 202859

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    tggtttttgttcattcgtt 36
             |||||||||||||||||||
Sbjct: 74201 tggtttttgttcattcgtt 74183



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    tggtttttgttcattcgtt 36
             |||||||||||||||||||
Sbjct: 74015 tggtttttgttcattcgtt 73997
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>emb|CR933103.10| Zebrafish DNA sequence from clone CH211-147G15 in linkage group 8,
             complete sequence
          Length = 147936

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tttttgttcattcgttcat 39
             |||||||||||||||||||
Sbjct: 16788 tttttgttcattcgttcat 16806
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>emb|AL596168.1| Listeria innocua Clip11262 complete genome, segment 6/12
          Length = 333050

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     tgtttcgacagcaaaagaa 69
              |||||||||||||||||||
Sbjct: 262191 tgtttcgacagcaaaagaa 262173
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>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence
          Length = 210140

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 93    agagcttcctatctacctt 111
             |||||||||||||||||||
Sbjct: 64510 agagcttcctatctacctt 64492
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>gb|AC008276.4| Homo sapiens BAC clone RP11-297I3 from 2, complete sequence
          Length = 208477

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    ttttgttcattcgttcatg 40
             |||||||||||||||||||
Sbjct: 76553 ttttgttcattcgttcatg 76535
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>gb|AC132145.3| Mus musculus BAC clone RP23-44H21 from chromosome 7, complete sequence
          Length = 162513

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    agcttcctatctaccttgt 113
             |||||||||||||||||||
Sbjct: 48250 agcttcctatctaccttgt 48232
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>gb|AC112984.21| Mus musculus chromosome 18, clone RP24-185P1, complete sequence
          Length = 171822

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     tttttgttcattcgttcat 39
              |||||||||||||||||||
Sbjct: 129181 tttttgttcattcgttcat 129199


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 907,271
Number of Sequences: 3902068
Number of extensions: 907271
Number of successful extensions: 97208
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97147
Number of HSP's gapped (non-prelim): 61
length of query: 116
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 95
effective length of database: 17,151,101,840
effective search space: 1629354674800
effective search space used: 1629354674800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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