ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 1e-78
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 268 2e-68
3gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 268 2e-68
4gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome... 268 2e-68
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 268 2e-68
6gb|AY110799.1| Zea mays CL4694_1 mRNA sequence 212 1e-51
7ref|NM_113597.2| Arabidopsis thaliana unknown protein AT3G26850 ... 46 0.13
8ref|NM_202639.1| Arabidopsis thaliana unknown protein AT3G26850 ... 46 0.13
9gb|BT015404.1| Arabidopsis thaliana At3g26850 gene, complete cds 46 0.13
10gb|AY056130.1| Arabidopsis thaliana unknown protein (At3g26850) ... 46 0.13
11emb|BX825649.1|CNS0A6C1 Arabidopsis thaliana Full-length cDNA Co... 46 0.13
12gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, compl... 44 0.51
13gb|AF267536.2| Takifugu rubripes NKX2.9 (nkx2.9) gene, exons 1 a... 44 0.51
14gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, comp... 44 0.51
15gb|AC015804.14| Homo sapiens chromosome 17, clone RP11-637C24, c... 44 0.51
16gb|AC145163.5| Mus musculus BAC clone RP24-238C5 from chromosome... 44 0.51
17gb|AC132189.13| Mus musculus chromosome 12, clone RP24-95M20, co... 44 0.51
18emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, ... 44 0.51
19dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.51
20gb|U06670.1|MMU06670 Mus musculus very low density lipoprotein r... 42 2.0
21gb|U28736.1| Caenorhabditis elegans cosmid F26A10, complete sequ... 42 2.0
22ref|NM_013703.1| Mus musculus very low density lipoprotein recep... 42 2.0
23gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, comple... 42 2.0
24ref|XM_526174.1| PREDICTED: Pan troglodytes similar to oxidative... 40 8.0
25ref|XM_605332.2| PREDICTED: Bos taurus similar to oxidative-stre... 40 8.0
26ref|XM_879712.1| PREDICTED: Bos taurus similar to oxidative-stre... 40 8.0
27gb|BC008726.2| Homo sapiens oxidative-stress responsive 1, mRNA ... 40 8.0
28gb|AC161216.4| Mus musculus chromosome 7, clone RP23-8K23, compl... 40 8.0
29gb|DQ201638.1| Homo sapiens oxidative-stress responsive 1 (OXSR1... 40 8.0
30gb|AY220493.1| Yersinia frederiksenii plasmid pMYF1 TcYF3 gene, ... 40 8.0
31gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosom... 40 8.0
32gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome... 40 8.0
33gb|AC102077.7| Mus musculus chromosome 7, clone RP23-423B21, com... 40 8.0
34emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-... 40 8.0
35emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on ch... 40 8.0
36gb|AF087893.1| Homo sapiens DCHT2 mRNA, complete cds 40 8.0
37gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Ho... 40 8.0
38emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chr... 40 8.0
39emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 ... 40 8.0
40gb|AC069242.13| Homo sapiens 3 BAC RP11-554J1 (Roswell Park Canc... 40 8.0
41dbj|AB029024.1| Homo sapiens mRNA for KIAA1101 protein, partial cds 40 8.0
42ref|NM_005109.2| Homo sapiens oxidative-stress responsive 1 (OXS... 40 8.0
43gb|AC079864.22| Homo sapiens Xp BAC RP11-662G16 (Roswell Park Ca... 40 8.0
44gb|AC093116.2| Homo sapiens chromosome 3 clone RP11-370K13, comp... 40 8.0
45gb|AY335598.1| Synthetic construct Homo sapiens oxidative-stress... 40 8.0
46emb|AL591905.10| Mouse DNA sequence from clone RP23-152H17 on ch... 40 8.0
47emb|BX284670.11| Zebrafish DNA sequence from clone CH211-264D7 i... 40 8.0
48gb|AC131315.16| Mus musculus chromosome 7, clone RP24-535I10, co... 40 8.0
49emb|BX928740.16| Zebrafish DNA sequence from clone CH211-245J22 ... 40 8.0
50dbj|AP006193.1| Homo sapiens genomic DNA, chromosome 3, clone:RP... 40 8.0
51emb|CT485784.2| RP43-026J01, complete sequence 40 8.0
52dbj|AP000499.1| Homo sapiens genomic DNA, chromosome 3p21.3, clo... 40 8.0
53dbj|AB017642.1| Homo sapiens mRNA for oxidative-stress responsiv... 40 8.0
54dbj|AB026898.1| Homo sapiens DNA, DLEC1 to ORCTL4 gene region, s... 40 8.0

>dbj|AK100534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N06, full
            insert sequence
          Length = 3665

 Score =  301 bits (152), Expect = 1e-78
 Identities = 236/264 (89%)
 Strand = Plus / Minus

                                                                        
Query: 263  ctataacttcacatacttgtcaacataacccattactagtttggtcactttcctttgaga 322
            ||||| ||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct: 3266 ctatagcttcacatatttgtcaacatagcccattacaagtttggtcactttcttttgaga 3207

                                                                        
Query: 323  agactggacatactgtctaatcttggctggtgttttcggtatatgattgccaggaaccga 382
             ||||||||||||||  | ||||||||||| ||||| || |||||||||  ||| || ||
Sbjct: 3206 ggactggacatactgcttgatcttggctggcgtttttggaatatgattgttagggacaga 3147

                                                                        
Query: 383  actagagaccttatcaactgttttcctaacaatcattttgaaagcatctctgctcatgtt 442
            |||||| |||||||||||||||||| | |||||  |||||||||| ||||| || |||||
Sbjct: 3146 actagaaaccttatcaactgttttcttgacaatggttttgaaagcctctctacttatgtt 3087

                                                                        
Query: 443  tccctgcctccatgatggcttaagaacttccttaacgaaatctgcaatagcaaccttaaa 502
            |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 3086 tccctgcctccatgatggcttaagaacttctttaacaaaatctgcaatagcaaccttaaa 3027

                                    
Query: 503  aagcttcattgatctggagtcctt 526
             ||||||||||||||||| |||||
Sbjct: 3026 tagcttcattgatctggaatcctt 3003



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  268 bits (135), Expect = 2e-68
 Identities = 210/235 (89%)
 Strand = Plus / Plus

                                                                           
Query: 292     ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 351
               ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 5975975 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 5976034

                                                                           
Query: 352     gtgttttcggtatatgattgccaggaaccgaactagagaccttatcaactgttttcctaa 411
               | ||||| || |||||||||  ||| || |||||||| |||||||||||||||||| | |
Sbjct: 5976035 gcgtttttggaatatgattgttagggacagaactagaaaccttatcaactgttttcttga 5976094

                                                                           
Query: 412     caatcattttgaaagcatctctgctcatgtttccctgcctccatgatggcttaagaactt 471
               ||||  |||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 5976095 caatggttttgaaagcctctctacttatgtttccctgcctccatgatggcttaagaactt 5976154

                                                                      
Query: 472     ccttaacgaaatctgcaatagcaaccttaaaaagcttcattgatctggagtcctt 526
               | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 5976155 ctttaacaaaatctgcaatagcaaccttaaatagcttcattgatctggaatcctt 5976209



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>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02,
              complete sequence
          Length = 128535

 Score =  268 bits (135), Expect = 2e-68
 Identities = 210/235 (89%)
 Strand = Plus / Plus

                                                                          
Query: 292    ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 351
              ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 125597 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 125656

                                                                          
Query: 352    gtgttttcggtatatgattgccaggaaccgaactagagaccttatcaactgttttcctaa 411
              | ||||| || |||||||||  ||| || |||||||| |||||||||||||||||| | |
Sbjct: 125657 gcgtttttggaatatgattgttagggacagaactagaaaccttatcaactgttttcttga 125716

                                                                          
Query: 412    caatcattttgaaagcatctctgctcatgtttccctgcctccatgatggcttaagaactt 471
              ||||  |||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 125717 caatggttttgaaagcctctctacttatgtttccctgcctccatgatggcttaagaactt 125776

                                                                     
Query: 472    ccttaacgaaatctgcaatagcaaccttaaaaagcttcattgatctggagtcctt 526
              | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 125777 ctttaacaaaatctgcaatagcaaccttaaatagcttcattgatctggaatcctt 125831



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>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
             complete sequence
          Length = 111961

 Score =  268 bits (135), Expect = 2e-68
 Identities = 210/235 (89%)
 Strand = Plus / Plus

                                                                         
Query: 292   ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 351
             ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 34510 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 34569

                                                                         
Query: 352   gtgttttcggtatatgattgccaggaaccgaactagagaccttatcaactgttttcctaa 411
             | ||||| || |||||||||  ||| || |||||||| |||||||||||||||||| | |
Sbjct: 34570 gcgtttttggaatatgattgttagggacagaactagaaaccttatcaactgttttcttga 34629

                                                                         
Query: 412   caatcattttgaaagcatctctgctcatgtttccctgcctccatgatggcttaagaactt 471
             ||||  |||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 34630 caatggttttgaaagcctctctacttatgtttccctgcctccatgatggcttaagaactt 34689

                                                                    
Query: 472   ccttaacgaaatctgcaatagcaaccttaaaaagcttcattgatctggagtcctt 526
             | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 34690 ctttaacaaaatctgcaatagcaaccttaaatagcttcattgatctggaatcctt 34744



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  268 bits (135), Expect = 2e-68
 Identities = 210/235 (89%)
 Strand = Plus / Plus

                                                                           
Query: 292     ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 351
               ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 5975188 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 5975247

                                                                           
Query: 352     gtgttttcggtatatgattgccaggaaccgaactagagaccttatcaactgttttcctaa 411
               | ||||| || |||||||||  ||| || |||||||| |||||||||||||||||| | |
Sbjct: 5975248 gcgtttttggaatatgattgttagggacagaactagaaaccttatcaactgttttcttga 5975307

                                                                           
Query: 412     caatcattttgaaagcatctctgctcatgtttccctgcctccatgatggcttaagaactt 471
               ||||  |||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 5975308 caatggttttgaaagcctctctacttatgtttccctgcctccatgatggcttaagaactt 5975367

                                                                      
Query: 472     ccttaacgaaatctgcaatagcaaccttaaaaagcttcattgatctggagtcctt 526
               | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 5975368 ctttaacaaaatctgcaatagcaaccttaaatagcttcattgatctggaatcctt 5975422



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>gb|AY110799.1| Zea mays CL4694_1 mRNA sequence
          Length = 761

 Score =  212 bits (107), Expect = 1e-51
 Identities = 195/226 (86%)
 Strand = Plus / Minus

                                                                       
Query: 269 cttcacatacttgtcaacataacccattactagtttggtcactttcctttgagaagactg 328
           ||||||||||||||| ||||| |||||||||| ||||||||| |||||||| || || ||
Sbjct: 249 cttcacatacttgtcgacataccccattactaatttggtcaccttcctttgggaggattg 190

                                                                       
Query: 329 gacatactgtctaatcttggctggtgttttcggtatatgattgccaggaaccgaactaga 388
            ||||| ||| |||||||||| ||||     || |||||| ||| |||||| ||||  ||
Sbjct: 189 tacataatgtttaatcttggcaggtgnnnnnggaatatgactgctaggaactgaaccgga 130

                                                                       
Query: 389 gaccttatcaactgttttcctaacaatcattttgaaagcatctctgctcatgtttccctg 448
            |||||||||||||||||||| |||||  |||||||||| ||| |||||||||| |||||
Sbjct: 129 aaccttatcaactgttttcctgacaatagttttgaaagcctctttgctcatgttaccctg 70

                                                         
Query: 449 cctccatgatggcttaagaacttccttaacgaaatctgcaatagca 494
           |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 69  cctccatgatggtttaagaacttccttaacaaaatctgcaatagca 24



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>ref|NM_113597.2| Arabidopsis thaliana unknown protein AT3G26850 transcript variant
            AT3G26850.1 mRNA, complete cds
          Length = 1700

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 273  acatacttgtcaacataacccattactagtttggt 307
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1141 acatacttgtctacataacccataaccagtttggt 1107



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>ref|NM_202639.1| Arabidopsis thaliana unknown protein AT3G26850 transcript variant
            AT3G26850.2 mRNA, complete cds
          Length = 1257

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 273  acatacttgtcaacataacccattactagtttggt 307
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1141 acatacttgtctacataacccataaccagtttggt 1107



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>gb|BT015404.1| Arabidopsis thaliana At3g26850 gene, complete cds
          Length = 798

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 273 acatacttgtcaacataacccattactagtttggt 307
           ||||||||||| ||||||||||| || ||||||||
Sbjct: 788 acatacttgtctacataacccataaccagtttggt 754



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>gb|AY056130.1| Arabidopsis thaliana unknown protein (At3g26850) mRNA, complete cds
          Length = 1468

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 273  acatacttgtcaacataacccattactagtttggt 307
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1142 acatacttgtctacataacccataaccagtttggt 1108



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>emb|BX825649.1|CNS0A6C1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL53ZE12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 758

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 273 acatacttgtcaacataacccattactagtttggt 307
           ||||||||||| ||||||||||| || ||||||||
Sbjct: 438 acatacttgtctacataacccataaccagtttggt 404



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>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence
          Length = 199569

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 137    aaaggactttctcatgcaaatagatg 162
              ||||||||||||||||||||| ||||
Sbjct: 195428 aaaggactttctcatgcaaattgatg 195403



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>gb|AF267536.2| Takifugu rubripes NKX2.9 (nkx2.9) gene, exons 1 and 2 and complete cds;
             and Pax9 (pax9) gene, exons 1 through 4 and complete cds
          Length = 24431

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 425   agcatctctgctcatgtttccc 446
             ||||||||||||||||||||||
Sbjct: 11981 agcatctctgctcatgtttccc 11960



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>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence
          Length = 157375

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 137   aaaggactttctcatgcaaatagatg 162
             ||||||||||||||||||||| ||||
Sbjct: 41292 aaaggactttctcatgcaaattgatg 41317



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>gb|AC015804.14| Homo sapiens chromosome 17, clone RP11-637C24, complete sequence
          Length = 200452

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 135    gtaaaggactttctcatgcaaa 156
              ||||||||||||||||||||||
Sbjct: 157305 gtaaaggactttctcatgcaaa 157326



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>gb|AC145163.5| Mus musculus BAC clone RP24-238C5 from chromosome 12, complete sequence
          Length = 194429

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 212    acttctacaactgcaaaggaagtctcttct 241
              |||| ||||| |||||||||||||||||||
Sbjct: 117316 acttgtacaagtgcaaaggaagtctcttct 117345



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>gb|AC132189.13| Mus musculus chromosome 12, clone RP24-95M20, complete sequence
          Length = 203534

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 212    acttctacaactgcaaaggaagtctcttct 241
              |||| ||||| |||||||||||||||||||
Sbjct: 184862 acttgtacaagtgcaaaggaagtctcttct 184891



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>emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, complete sequence
          Length = 178948

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 3     aagaaatatcaacaaagtgctt 24
             ||||||||||||||||||||||
Sbjct: 51025 aagaaatatcaacaaagtgctt 51046



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>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5
          Length = 178420

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 137   aaaggactttctcatgcaaatagatg 162
             ||||||||||||||||||||| ||||
Sbjct: 42915 aaaggactttctcatgcaaattgatg 42940



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>gb|U06670.1|MMU06670 Mus musculus very low density lipoprotein receptor mRNA, complete cds
          Length = 3283

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 4    agaaatatcaacaaagtgctt 24
            |||||||||||||||||||||
Sbjct: 3205 agaaatatcaacaaagtgctt 3185



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>gb|U28736.1| Caenorhabditis elegans cosmid F26A10, complete sequence
          Length = 38482

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   acttacaagaataccttcttg 135
             |||||||||||||||||||||
Sbjct: 29978 acttacaagaataccttcttg 29958



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>ref|NM_013703.1| Mus musculus very low density lipoprotein receptor (Vldlr), mRNA
          Length = 3283

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 4    agaaatatcaacaaagtgctt 24
            |||||||||||||||||||||
Sbjct: 3205 agaaatatcaacaaagtgctt 3185



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>gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, complete sequence
          Length = 158746

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 415  tcattttgaaagcatctctgctcat 439
            ||||||||||||||||| |||||||
Sbjct: 7454 tcattttgaaagcatctatgctcat 7430



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>ref|XM_526174.1| PREDICTED: Pan troglodytes similar to oxidative-stress responsive 1
            (LOC470791), mRNA
          Length = 1701

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1662 atcatcaggaatatctgagc 1643



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>ref|XM_605332.2| PREDICTED: Bos taurus similar to oxidative-stress responsive 1,
            transcript variant 1 (LOC526949), mRNA
          Length = 1979

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1553 atcatcaggaatatctgagc 1534



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>ref|XM_879712.1| PREDICTED: Bos taurus similar to oxidative-stress responsive 1,
            transcript variant 2 (LOC526949), mRNA
          Length = 1937

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1511 atcatcaggaatatctgagc 1492



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>gb|BC008726.2| Homo sapiens oxidative-stress responsive 1, mRNA (cDNA clone MGC:1572
            IMAGE:3163379), complete cds
          Length = 4521

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1870 atcatcaggaatatctgagc 1851



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>gb|AC161216.4| Mus musculus chromosome 7, clone RP23-8K23, complete sequence
          Length = 228889

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    catgtttccctgcctccatg 456
              ||||||||||||||||||||
Sbjct: 205639 catgtttccctgcctccatg 205620



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>gb|DQ201638.1| Homo sapiens oxidative-stress responsive 1 (OXSR1) gene, complete cds
          Length = 93915

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   atcatcaggaatatctgagc 585
             ||||||||||||||||||||
Sbjct: 89333 atcatcaggaatatctgagc 89314



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>gb|AY220493.1| Yersinia frederiksenii plasmid pMYF1 TcYF3 gene, complete cds
          Length = 2937

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 550  actggtcattgtcgatatca 569
            ||||||||||||||||||||
Sbjct: 1714 actggtcattgtcgatatca 1695



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>gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosome 14, complete sequence
          Length = 195425

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     atgtttaaacacatgattct 94
              ||||||||||||||||||||
Sbjct: 156209 atgtttaaacacatgattct 156190



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>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete sequence
          Length = 183140

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     tgtttaaacacatgattcta 95
              ||||||||||||||||||||
Sbjct: 133895 tgtttaaacacatgattcta 133876



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>gb|AC102077.7| Mus musculus chromosome 7, clone RP23-423B21, complete sequence
          Length = 229721

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    catgtttccctgcctccatg 456
              ||||||||||||||||||||
Sbjct: 101989 catgtttccctgcctccatg 101970



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>emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-001A02, complete sequence
          Length = 186572

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cttcacatacttgtcaacat 288
             ||||||||||||||||||||
Sbjct: 60734 cttcacatacttgtcaacat 60715



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>emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on chromosome 10, complete
             sequence
          Length = 139968

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 225   caaaggaagtctcttctgattggc 248
             ||||||| ||||||||||||||||
Sbjct: 84041 caaaggatgtctcttctgattggc 84064



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>gb|AF087893.1| Homo sapiens DCHT2 mRNA, complete cds
          Length = 1282

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1033 atcatcaggaatatctgagc 1014



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>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 242500

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tgtaaaggactttctcatgc 153
              ||||||||||||||||||||
Sbjct: 202855 tgtaaaggactttctcatgc 202836



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>emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chromosome 11 Cntains the
             3' end of the Nipsnap1 gene for 4-nitrophenylphosphatase
             domain and non-neuronal SNAP25-like protein homolog 1 (C.
             elegans), a novel gene, a ribosomal protein L17 (Rpl17)
             pseudogene, the Nefh gene for neurofilament heavy
             polypeptide, the Ap1b1 gene for adaptor protein complex
             AP-1 beta 1 subunit, the gene for the ortholog of human
             RAS-related protein on chromosome 22, the gene for the
             ortholog of human growth arrest-specific 2 like 1 GAS2L1
             and six CpG islands, complete sequence
          Length = 183758

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   ttctacaactgcaaaggaag 233
             ||||||||||||||||||||
Sbjct: 42628 ttctacaactgcaaaggaag 42609



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>emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 in linkage group 13,
              complete sequence
          Length = 186151

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    aaatctgcaatagcaacctt 499
              ||||||||||||||||||||
Sbjct: 119540 aaatctgcaatagcaacctt 119559



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>gb|AC069242.13| Homo sapiens 3 BAC RP11-554J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184664

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   ttacatccaatgactggtca 557
             ||||||||||||||||||||
Sbjct: 78042 ttacatccaatgactggtca 78023



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>dbj|AB029024.1| Homo sapiens mRNA for KIAA1101 protein, partial cds
          Length = 4272

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1640 atcatcaggaatatctgagc 1621



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>ref|NM_005109.2| Homo sapiens oxidative-stress responsive 1 (OXSR1), mRNA
          Length = 4525

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1887 atcatcaggaatatctgagc 1868



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>gb|AC079864.22| Homo sapiens Xp BAC RP11-662G16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 161874

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  cttcacatacttgtcaacat 288
            ||||||||||||||||||||
Sbjct: 4858 cttcacatacttgtcaacat 4839



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>gb|AC093116.2| Homo sapiens chromosome 3 clone RP11-370K13, complete sequence
          Length = 182224

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   atcatcaggaatatctgagc 585
             ||||||||||||||||||||
Sbjct: 46933 atcatcaggaatatctgagc 46952



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>gb|AY335598.1| Synthetic construct Homo sapiens oxidative-stress responsive 1 (OSR1)
            mRNA, partial cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1545 atcatcaggaatatctgagc 1526



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>emb|AL591905.10| Mouse DNA sequence from clone RP23-152H17 on chromosome 2, complete
              sequence
          Length = 194013

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     tgtttaaacacatgattcta 95
              ||||||||||||||||||||
Sbjct: 161820 tgtttaaacacatgattcta 161801



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>emb|BX284670.11| Zebrafish DNA sequence from clone CH211-264D7 in linkage group 18,
             complete sequence
          Length = 159822

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   aaatctgcaatagcaacctt 499
             ||||||||||||||||||||
Sbjct: 44379 aaatctgcaatagcaacctt 44360



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>gb|AC131315.16| Mus musculus chromosome 7, clone RP24-535I10, complete sequence
          Length = 213958

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   catgtttccctgcctccatg 456
             ||||||||||||||||||||
Sbjct: 33154 catgtttccctgcctccatg 33173



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>emb|BX928740.16| Zebrafish DNA sequence from clone CH211-245J22 in linkage group 18,
             complete sequence
          Length = 154133

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aaactgatgtttaaacacat 88
             ||||||||||||||||||||
Sbjct: 39008 aaactgatgtttaaacacat 38989



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>dbj|AP006193.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-815I22, complete
              sequence
          Length = 205834

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 566    atcatcaggaatatctgagc 585
              ||||||||||||||||||||
Sbjct: 146616 atcatcaggaatatctgagc 146635



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>emb|CT485784.2| RP43-026J01, complete sequence
          Length = 201375

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    cttcacatacttgtcaacat 288
              ||||||||||||||||||||
Sbjct: 169038 cttcacatacttgtcaacat 169019



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>dbj|AP000499.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:603 to 320,
             anti-oncogene region, section 2/3
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   atcatcaggaatatctgagc 585
             ||||||||||||||||||||
Sbjct: 69162 atcatcaggaatatctgagc 69143



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>dbj|AB017642.1| Homo sapiens mRNA for oxidative-stress responsive 1, complete cds
          Length = 4519

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  atcatcaggaatatctgagc 585
            ||||||||||||||||||||
Sbjct: 1887 atcatcaggaatatctgagc 1868



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>dbj|AB026898.1| Homo sapiens DNA, DLEC1 to ORCTL4 gene region, section 1/2 (DLEC1,
              ORCTL3, ORCTL4 genes, complete cds)
          Length = 270000

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 566    atcatcaggaatatctgagc 585
              ||||||||||||||||||||
Sbjct: 201834 atcatcaggaatatctgagc 201815


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,456,054
Number of Sequences: 3902068
Number of extensions: 5456054
Number of successful extensions: 137515
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137337
Number of HSP's gapped (non-prelim): 178
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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