ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24n01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108066.1| Zea mays PCO103496 mRNA sequence Length = 749 Score = 168 bits (85), Expect = 4e-39 Identities = 165/192 (85%), Gaps = 1/192 (0%) Strand = Plus / Minus Query: 3 gtgtcttctggaaccgtcttggccgaagcagngtaggcaaaggctcagaacccgtctagt 62 |||||||| ||||||| |||||||||||| | | ||||| |||||||||||||| || || Sbjct: 500 gtgtcttccggaaccggcttggccgaagcggag-aggcagaggctcagaacccgcctggt 442 Query: 63 atctgcagggtctatgatcccgtcgtcccaaagcctagcggtcgagtaatacgggcttcc 122 || |||||||| |||| |||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 441 gtcagcagggtcgatgaccccgtcgtcccatagcctagcagtggagtagtacgggcttcc 382 Query: 123 ttccttgtcataagcctcgacgactttggctttgaaggcttcttnnttnttnttggtcca 182 ||| |||| |||||||| ||||||||||||||||||||||||| | | ||| |||| Sbjct: 381 ttctctgtcgtaagcctccacgactttggctttgaaggcttcttcctcgtccttgctcca 322 Query: 183 ctccactccttg 194 |||||||||||| Sbjct: 321 ctccactccttg 310
>ref|XM_482468.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1719 Score = 163 bits (82), Expect = 3e-37 Identities = 174/205 (84%), Gaps = 1/205 (0%) Strand = Plus / Minus Query: 3 gtgtcttctggaaccgtcttggccgaagcagngtaggcaaaggctcagaacccgtctagt 62 |||||||||||||||| ||| |||| ||||| || ||| ||||| | ||||||||| || Sbjct: 1694 gtgtcttctggaaccggctttgccgcagcaga-taagcagaggcttaaaacccgtctggt 1636 Query: 63 atctgcagggtctatgatcccgtcgtcccaaagcctagcggtcgagtaatacgggcttcc 122 || ||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||||| Sbjct: 1635 gtccgcaggatctataatcccatcgtcccaaagtctagcggtggagtagtatgggcttcc 1576 Query: 123 ttccttgtcataagcctcgacgactttggctttgaaggcttcttnnttnttnttggtcca 182 ||| |||||||||||||| || ||||| |||||||||||||||| | | |||||||| Sbjct: 1575 ttctttgtcataagcctccacaacttttgctttgaaggcttcttcctcatctttggtcca 1516 Query: 183 ctccactccttgccttttcctgttg 207 |||||||||||| ||||| |||||| Sbjct: 1515 ctccactccttgtctttttctgttg 1491
>dbj|AK060716.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D11, full insert sequence Length = 1225 Score = 163 bits (82), Expect = 3e-37 Identities = 174/205 (84%), Gaps = 1/205 (0%) Strand = Plus / Minus Query: 3 gtgtcttctggaaccgtcttggccgaagcagngtaggcaaaggctcagaacccgtctagt 62 |||||||||||||||| ||| |||| ||||| || ||| ||||| | ||||||||| || Sbjct: 908 gtgtcttctggaaccggctttgccgcagcaga-taagcagaggcttaaaacccgtctggt 850 Query: 63 atctgcagggtctatgatcccgtcgtcccaaagcctagcggtcgagtaatacgggcttcc 122 || ||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||||| Sbjct: 849 gtccgcaggatctataatcccatcgtcccaaagtctagcggtggagtagtatgggcttcc 790 Query: 123 ttccttgtcataagcctcgacgactttggctttgaaggcttcttnnttnttnttggtcca 182 ||| |||||||||||||| || ||||| |||||||||||||||| | | |||||||| Sbjct: 789 ttctttgtcataagcctccacaacttttgctttgaaggcttcttcctcatctttggtcca 730 Query: 183 ctccactccttgccttttcctgttg 207 |||||||||||| ||||| |||||| Sbjct: 729 ctccactccttgtctttttctgttg 705
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 137 bits (69), Expect = 2e-29 Identities = 141/164 (85%), Gaps = 1/164 (0%) Strand = Plus / Plus Query: 3 gtgtcttctggaaccgtcttggccgaagcagngtaggcaaaggctcagaacccgtctagt 62 |||||||||||||||| ||| |||| ||||| || ||| ||||| | ||||||||| || Sbjct: 20352638 gtgtcttctggaaccggctttgccgcagcaga-taagcagaggcttaaaacccgtctggt 20352696 Query: 63 atctgcagggtctatgatcccgtcgtcccaaagcctagcggtcgagtaatacgggcttcc 122 || ||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||||| Sbjct: 20352697 gtccgcaggatctataatcccatcgtcccaaagtctagcggtggagtagtatgggcttcc 20352756 Query: 123 ttccttgtcataagcctcgacgactttggctttgaaggcttctt 166 ||| |||||||||||||| || ||||| |||||||||||||||| Sbjct: 20352757 ttctttgtcataagcctccacaacttttgctttgaaggcttctt 20352800
>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056L09 Length = 152910 Score = 137 bits (69), Expect = 2e-29 Identities = 141/164 (85%), Gaps = 1/164 (0%) Strand = Plus / Plus Query: 3 gtgtcttctggaaccgtcttggccgaagcagngtaggcaaaggctcagaacccgtctagt 62 |||||||||||||||| ||| |||| ||||| || ||| ||||| | ||||||||| || Sbjct: 100386 gtgtcttctggaaccggctttgccgcagcaga-taagcagaggcttaaaacccgtctggt 100444 Query: 63 atctgcagggtctatgatcccgtcgtcccaaagcctagcggtcgagtaatacgggcttcc 122 || ||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||||| Sbjct: 100445 gtccgcaggatctataatcccatcgtcccaaagtctagcggtggagtagtatgggcttcc 100504 Query: 123 ttccttgtcataagcctcgacgactttggctttgaaggcttctt 166 ||| |||||||||||||| || ||||| |||||||||||||||| Sbjct: 100505 ttctttgtcataagcctccacaacttttgctttgaaggcttctt 100548
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.043 Identities = 35/39 (89%) Strand = Plus / Plus Query: 81 cccgtcgtcccaaagcctagcggtcgagtaatacgggct 119 |||||||||||| |||| ||||||| |||||||||||| Sbjct: 3346256 cccgtcgtcccacagccgcgcggtcgcgtaatacgggct 3346294
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.17 Identities = 34/38 (89%) Strand = Plus / Minus Query: 82 ccgtcgtcccaaagcctagcggtcgagtaatacgggct 119 ||||||||||| |||| ||||||||| || |||||||| Sbjct: 1831182 ccgtcgtcccacagccgagcggtcgaatagtacgggct 1831145
>dbj|AP006380.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT01O24, TM0227, complete sequence Length = 84166 Score = 44.1 bits (22), Expect = 0.17 Identities = 70/86 (81%) Strand = Plus / Minus Query: 73 tctatgatcccgtcgtcccaaagcctagcggtcgagtaatacgggcttccttccttgtca 132 |||||||| || || ||||||||||| || || |||||||| || |||||||| ||| Sbjct: 5411 tctatgattccatcatcccaaagcctcgctgttgagtaataaggacttccttctacctca 5352 Query: 133 taagcctcgacgactttggctttgaa 158 |||||||| || ||||| | |||||| Sbjct: 5351 taagcctccactacttttgttttgaa 5326
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 0.67 Identities = 27/29 (93%) Strand = Plus / Plus Query: 69 agggtctatgatcccgtcgtcccaaagcc 97 |||||| ||||| |||||||||||||||| Sbjct: 2977045 agggtcgatgatgccgtcgtcccaaagcc 2977073
>ref|XM_394033.2| PREDICTED: Apis mellifera similar to methylcrotonoyl-Coenzyme A carboxylase 2 (beta) (LOC410554), mRNA Length = 1680 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ccgtcgtcccaaagcctagcg 102 ||||||||||||||||||||| Sbjct: 1577 ccgtcgtcccaaagcctagcg 1557
>gb|AC101687.11| Mus musculus chromosome 8, clone RP23-205D7, complete sequence Length = 185997 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 tccactccactccttgcctt 198 |||||||||||||||||||| Sbjct: 107904 tccactccactccttgcctt 107885
>gb|AC158348.4| Mus musculus chromosome 8, clone RP24-134G9, complete sequence Length = 175836 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 tccactccactccttgcctt 198 |||||||||||||||||||| Sbjct: 15933 tccactccactccttgcctt 15914
>gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187438 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccactccttgccttttcctg 204 |||||||||||||||||||| Sbjct: 99810 ccactccttgccttttcctg 99829
>gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170465 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccactccttgccttttcctg 204 |||||||||||||||||||| Sbjct: 19479 ccactccttgccttttcctg 19498
>tpg|BK001862.1| TPA: TPA_inf: Drosophila melanogaster HDC07870 (HDC07870) gene, complete cds Length = 1836 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccactccttgccttttcctg 204 |||||||||||||||||||| Sbjct: 195 ccactccttgccttttcctg 214
>gb|AC013287.11| Homo sapiens chromosome 10 clone RP11-76F14, complete sequence Length = 174578 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cactccactccttgcctttt 200 |||||||||||||||||||| Sbjct: 53618 cactccactccttgcctttt 53637
>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete sequence Length = 318699 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccactccttgccttttcctg 204 |||||||||||||||||||| Sbjct: 224358 ccactccttgccttttcctg 224377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,862,858 Number of Sequences: 3902068 Number of extensions: 1862858 Number of successful extensions: 82748 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82649 Number of HSP's gapped (non-prelim): 90 length of query: 210 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 188 effective length of database: 17,147,199,772 effective search space: 3223673557136 effective search space used: 3223673557136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
