ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25b19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYOC_FELCA (Q594P2) Myocilin precursor 30 4.2
2COFD_METAC (Q8TST1) LPPG:FO 2-phopspho-L-lactate transferase (EC... 30 5.5
3ARHGC_MOUSE (Q8R4H2) Rho guanine nucleotide exchange factor 12 (... 29 9.3

>MYOC_FELCA (Q594P2) Myocilin precursor|
          Length = 490

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 322 TQESF*RKASASRREKKETSNSSK*FDAAWISYLRYSQRCQEQKKSFTSQVE 167
           TQE   R+  A RRE+++  + ++  +A++ + LR     +E+K+    + E
Sbjct: 99  TQEGLQRELGALRREREQLESQNRELEASYSNLLRDKSALEEEKRRLREENE 150



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>COFD_METAC (Q8TST1) LPPG:FO 2-phopspho-L-lactate transferase (EC 2.7.1.-)|
          Length = 307

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 177 VKSSISLGEADRVVHKIKSAYLRGAASSETLVSRIAS 67
           ++ S+ LG+ DR  H I+S  +RG  S      ++AS
Sbjct: 82  IEESMKLGDRDRATHIIRSNLIRGGTSLTEATVKLAS 118



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>ARHGC_MOUSE (Q8R4H2) Rho guanine nucleotide exchange factor 12|
           (Leukemia-associated RhoGEF)
          Length = 1543

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 249 NLTLHGSVILDTPNDVRNRRNLSLVKSSISLGEADRVVHKIKSAYLRGAASSE 91
           ++T H S I+ +P+      N+  + S + +GE + VVH  K   LR     E
Sbjct: 164 SVTGHMSPIMTSPHSPGAAGNMERITSPVLVGEENNVVHNQKVEILRKMLQKE 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,602,146
Number of Sequences: 219361
Number of extensions: 1115693
Number of successful extensions: 2416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2416
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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