ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25b19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 406 tgaagctgaagctgagctcgtaggagtggtggtaccaaatgaatttcttctttccaaaac 465 |||| |||||||||| |||||||||||| | |||||||||||||||||||||||| || Sbjct: 5778419 tgaacctgaagctgaactcgtaggagtgctaccaccaaatgaatttcttctttccaatac 5778360 Query: 466 tctggacattgag 478 | ||||||||||| Sbjct: 5778359 tttggacattgag 5778347 Score = 79.8 bits (40), Expect = 8e-12 Identities = 119/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 143 cggtcagcttcacccaatgatatactcgacttgactagtgaaagatttcttctgttcctg 202 ||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||| |||| Sbjct: 5778676 cggtcagattcacccagagatatactcgacttggctagagaaagatttct-ctg--cctg 5778620 Query: 203 acatcgttgggagtatctaagataactgatccatgcagcgtcaaattattttgatgagtt 262 ||||| || | |||| |||||| |||||| |||| ||||||||||||| |||| | Sbjct: 5778619 acatcctttgatctatccaagatagctgatctgtgcaacgtcaaattatttaaatgacta 5778560 Query: 263 ggaagtctctttcttctccctcc 285 |||||| |||||||||| ||||| Sbjct: 5778559 ggaagtttctttcttctgcctcc 5778537 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 44 ttcacatttttatgatcagctgatgaag 71 ||||| |||||||||||||||||||||| Sbjct: 5778769 ttcacgtttttatgatcagctgatgaag 5778742
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence Length = 139208 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 406 tgaagctgaagctgagctcgtaggagtggtggtaccaaatgaatttcttctttccaaaac 465 |||| |||||||||| |||||||||||| | |||||||||||||||||||||||| || Sbjct: 7249 tgaacctgaagctgaactcgtaggagtgctaccaccaaatgaatttcttctttccaatac 7190 Query: 466 tctggacattgag 478 | ||||||||||| Sbjct: 7189 tttggacattgag 7177 Score = 79.8 bits (40), Expect = 8e-12 Identities = 119/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 143 cggtcagcttcacccaatgatatactcgacttgactagtgaaagatttcttctgttcctg 202 ||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||| |||| Sbjct: 7506 cggtcagattcacccagagatatactcgacttggctagagaaagatttct-ctg--cctg 7450 Query: 203 acatcgttgggagtatctaagataactgatccatgcagcgtcaaattattttgatgagtt 262 ||||| || | |||| |||||| |||||| |||| ||||||||||||| |||| | Sbjct: 7449 acatcctttgatctatccaagatagctgatctgtgcaacgtcaaattatttaaatgacta 7390 Query: 263 ggaagtctctttcttctccctcc 285 |||||| |||||||||| ||||| Sbjct: 7389 ggaagtttctttcttctgcctcc 7367 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 44 ttcacatttttatgatcagctgatgaag 71 ||||| |||||||||||||||||||||| Sbjct: 7599 ttcacgtttttatgatcagctgatgaag 7572
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 406 tgaagctgaagctgagctcgtaggagtggtggtaccaaatgaatttcttctttccaaaac 465 |||| |||||||||| |||||||||||| | |||||||||||||||||||||||| || Sbjct: 52752 tgaacctgaagctgaactcgtaggagtgctaccaccaaatgaatttcttctttccaatac 52811 Query: 466 tctggacattgag 478 | ||||||||||| Sbjct: 52812 tttggacattgag 52824 Score = 79.8 bits (40), Expect = 8e-12 Identities = 119/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 143 cggtcagcttcacccaatgatatactcgacttgactagtgaaagatttcttctgttcctg 202 ||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||| |||| Sbjct: 52495 cggtcagattcacccagagatatactcgacttggctagagaaagatttct-ctg--cctg 52551 Query: 203 acatcgttgggagtatctaagataactgatccatgcagcgtcaaattattttgatgagtt 262 ||||| || | |||| |||||| |||||| |||| ||||||||||||| |||| | Sbjct: 52552 acatcctttgatctatccaagatagctgatctgtgcaacgtcaaattatttaaatgacta 52611 Query: 263 ggaagtctctttcttctccctcc 285 |||||| |||||||||| ||||| Sbjct: 52612 ggaagtttctttcttctgcctcc 52634 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 44 ttcacatttttatgatcagctgatgaag 71 ||||| |||||||||||||||||||||| Sbjct: 52402 ttcacgtttttatgatcagctgatgaag 52429
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 406 tgaagctgaagctgagctcgtaggagtggtggtaccaaatgaatttcttctttccaaaac 465 |||| |||||||||| |||||||||||| | |||||||||||||||||||||||| || Sbjct: 5777632 tgaacctgaagctgaactcgtaggagtgctaccaccaaatgaatttcttctttccaatac 5777573 Query: 466 tctggacattgag 478 | ||||||||||| Sbjct: 5777572 tttggacattgag 5777560 Score = 79.8 bits (40), Expect = 8e-12 Identities = 119/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 143 cggtcagcttcacccaatgatatactcgacttgactagtgaaagatttcttctgttcctg 202 ||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||| |||| Sbjct: 5777889 cggtcagattcacccagagatatactcgacttggctagagaaagatttct-ctg--cctg 5777833 Query: 203 acatcgttgggagtatctaagataactgatccatgcagcgtcaaattattttgatgagtt 262 ||||| || | |||| |||||| |||||| |||| ||||||||||||| |||| | Sbjct: 5777832 acatcctttgatctatccaagatagctgatctgtgcaacgtcaaattatttaaatgacta 5777773 Query: 263 ggaagtctctttcttctccctcc 285 |||||| |||||||||| ||||| Sbjct: 5777772 ggaagtttctttcttctgcctcc 5777750 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 44 ttcacatttttatgatcagctgatgaag 71 ||||| |||||||||||||||||||||| Sbjct: 5777982 ttcacgtttttatgatcagctgatgaag 5777955
>dbj|AK070892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073N11, full insert sequence Length = 2791 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 406 tgaagctgaagctgagctcgtaggagtggtggtaccaaatgaatttcttctttccaaaac 465 |||| |||||||||| |||||||||||| | |||||||||||||||||||||||| || Sbjct: 286 tgaacctgaagctgaactcgtaggagtgctaccaccaaatgaatttcttctttccaatac 227 Query: 466 tctggacattgag 478 | ||||||||||| Sbjct: 226 tttggacattgag 214 Score = 79.8 bits (40), Expect = 8e-12 Identities = 119/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 143 cggtcagcttcacccaatgatatactcgacttgactagtgaaagatttcttctgttcctg 202 ||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||| |||| Sbjct: 543 cggtcagattcacccagagatatactcgacttggctagagaaagatttct-ctg--cctg 487 Query: 203 acatcgttgggagtatctaagataactgatccatgcagcgtcaaattattttgatgagtt 262 ||||| || | |||| |||||| |||||| |||| ||||||||||||| |||| | Sbjct: 486 acatcctttgatctatccaagatagctgatctgtgcaacgtcaaattatttaaatgacta 427 Query: 263 ggaagtctctttcttctccctcc 285 |||||| |||||||||| ||||| Sbjct: 426 ggaagtttctttcttctgcctcc 404 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 44 ttcacatttttatgatcagctgatgaag 71 ||||| |||||||||||||||||||||| Sbjct: 636 ttcacgtttttatgatcagctgatgaag 609
>ref|XM_520120.1| PREDICTED: Pan troglodytes similar to SECIS binding protein 2 (LOC464583), mRNA Length = 3057 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 1607 acatttttaggatctgctgatgaagcaat 1579
>ref|NM_024077.3| Homo sapiens SECIS binding protein 2 (SECISBP2), mRNA Length = 3477 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 1090 acatttttaggatctgctgatgaagcaat 1062
>ref|XM_446327.1| Candida glabrata CBS138, CAGL0F08239g partial mRNA Length = 1434 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 attattttgatgagttggaag 267 ||||||||||||||||||||| Sbjct: 887 attattttgatgagttggaag 907
>gb|AC138591.10| Mus musculus chromosome 3, clone RP24-224A19, complete sequence Length = 147525 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 286 gagaagcagaagcttttcttc 306 ||||||||||||||||||||| Sbjct: 56805 gagaagcagaagcttttcttc 56785
>gb|BC068466.1| Homo sapiens cDNA clone IMAGE:5297396, **** WARNING: chimeric clone **** Length = 3435 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 1049 acatttttaggatctgctgatgaagcaat 1021
>emb|BX000356.6| Human DNA sequence from clone RP11-89K14 on chromosome 9 Need to finish variants when gap closed, complete sequence Length = 23142 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 12467 acatttttaggatctgctgatgaagcaat 12439
>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence Length = 927101 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 attattttgatgagttggaag 267 ||||||||||||||||||||| Sbjct: 821993 attattttgatgagttggaag 822013
>gb|BC036109.1| Homo sapiens SECIS binding protein 2, mRNA (cDNA clone MGC:33935 IMAGE:5296292), complete cds Length = 2796 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 1076 acatttttaggatctgctgatgaagcaat 1048
>emb|AL645855.25| Mouse DNA sequence from clone RP23-122N23 on chromosome 11 Contains a novel gene, complete sequence Length = 203914 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 gaagcttttcttcagaaggat 314 ||||||||||||||||||||| Sbjct: 142205 gaagcttttcttcagaaggat 142185
>emb|AL136881.1|HSM801849 Homo sapiens mRNA; cDNA DKFZp434B216 (from clone DKFZp434B216) Length = 3360 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 947 acatttttaggatctgctgatgaagcaat 919
>gb|AF380995.1| Homo sapiens SECIS binding protein 2 (SBP2) mRNA, complete cds Length = 3457 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 1067 acatttttaggatctgctgatgaagcaat 1039
>dbj|AK090608.1| Homo sapiens cDNA FLJ33289 fis, clone BGGI12001075, moderately similar to Rattus norvegicus mRNA for SECIS binding protein 2 (sbp2 gene) Length = 2507 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 1081 acatttttaggatctgctgatgaagcaat 1053
>gb|AF353999.1|AF353999 Mesostigma viride mitochondrion, complete genome Length = 42424 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 ttttttgaagaatctgaagct 412 ||||||||||||||||||||| Sbjct: 31065 ttttttgaagaatctgaagct 31085
>ref|NM_060012.1| Caenorhabditis elegans MeDiaTor family member (mdt-31) (mdt-31) mRNA, complete cds Length = 492 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 ttgaagaatctgaagctgaagctga 420 ||||||||||||||| ||||||||| Sbjct: 353 ttgaagaatctgaagatgaagctga 377
>emb|Z81523.1|CEF32H2 Caenorhabditis elegans Cosmid F32H2, complete sequence Length = 40879 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 ttgaagaatctgaagctgaagctga 420 ||||||||||||||| ||||||||| Sbjct: 7625 ttgaagaatctgaagatgaagctga 7649
>dbj|AB208940.1| Homo sapiens premature mRNA for Hypothetical protein DKFZp434B216 variant Length = 3404 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 acatttttatgatcagctgatgaagcaat 75 ||||||||| |||| |||||||||||||| Sbjct: 1034 acatttttaggatctgctgatgaagcaat 1006
>ref|XM_475859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2988 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gcagaagcttttcttcagaa 310 |||||||||||||||||||| Sbjct: 1387 gcagaagcttttcttcagaa 1406
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gcagaagcttttcttcagaa 310 |||||||||||||||||||| Sbjct: 32627 gcagaagcttttcttcagaa 32646
>gb|AC161409.11| Mus musculus chromosome 7, clone RP23-292B24, complete sequence Length = 185365 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 aggattcctgtgtccatgct 329 |||||||||||||||||||| Sbjct: 137272 aggattcctgtgtccatgct 137291 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 aggattcctgtgtccatgct 329 |||||||||||||||||||| Sbjct: 84208 aggattcctgtgtccatgct 84227
>ref|XM_418876.1| PREDICTED: Gallus gallus similar to Contactin associated protein-like 2 precursor (Cell recognition molecule Caspr2) (LOC420781), mRNA Length = 4263 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ctgaagctgaagctgagctc 424 |||||||||||||||||||| Sbjct: 3929 ctgaagctgaagctgagctc 3910
>ref|XM_591379.2| PREDICTED: Bos taurus similar to DNA repair protein REV1 (Rev1-like terminal deoxycytidyl transferase) (Alpha integrin binding protein 80) (AIBP80) (LOC513657), mRNA Length = 3944 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 agaagcagaagcttttcttc 306 |||||||||||||||||||| Sbjct: 660 agaagcagaagcttttcttc 679
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gcagaagcttttcttcagaa 310 |||||||||||||||||||| Sbjct: 89055 gcagaagcttttcttcagaa 89074
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22, complete sequence Length = 177557 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tctctttcttctccctccga 287 |||||||||||||||||||| Sbjct: 166478 tctctttcttctccctccga 166497
>gb|AC024867.2| Caenorhabditis elegans cosmid Y74C10AR, complete sequence Length = 8659 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 1200 tgaagaagctgaagctgaagctga 1177
>ref|XM_645317.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (221.t00009) partial mRNA Length = 2154 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 tcaaattattttgatgagtt 262 |||||||||||||||||||| Sbjct: 1834 tcaaattattttgatgagtt 1853
>gb|DQ153247.1| Mus musculus testis-specific IQ motif containing protein 2 mRNA, complete cds Length = 1166 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 251 tgaagaaactgaagctgaagctga 274 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 146 tgaagaaactgaagctgaagctga 169
>gb|AC161037.3| Mus musculus chromosome 7, clone RP24-255H18, complete sequence Length = 184362 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 aggattcctgtgtccatgct 329 |||||||||||||||||||| Sbjct: 153381 aggattcctgtgtccatgct 153362
>gb|AC165173.2| Zea mays clone ZMMBBb-125O19, complete sequence Length = 157660 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 aagaatctgaagctgaagctgagc 422 ||||| |||||||||||||||||| Sbjct: 26796 aagaaactgaagctgaagctgagc 26819
>emb|X97752.1|MMRETDEHY M.musculus gene rdh for 11-cis retinol dehydrogenase Length = 9347 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ttcttcagaaggattcctgt 320 |||||||||||||||||||| Sbjct: 5384 ttcttcagaaggattcctgt 5365
>emb|CR848664.5| Zebrafish DNA sequence from clone CH211-169I9 in linkage group 15, complete sequence Length = 139504 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ttttgatgagttggaagtct 270 |||||||||||||||||||| Sbjct: 91211 ttttgatgagttggaagtct 91230
>gb|AC152452.3| Mus musculus BAC clone RP24-279M22 from chromosome 9, complete sequence Length = 176943 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 77057 tgaagaaactgaagctgaagctga 77034 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 73719 tgaagaaactgaagctgaagctga 73696
>dbj|AB210286.1| Sus scrofa TLR6, TLR1, TLR10 genes for Toll-like receptor 6, Toll-like receptor 1, Toll-like receptor 10, complete cds Length = 173804 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 atgtttctttctgccatcag 40 |||||||||||||||||||| Sbjct: 158714 atgtttctttctgccatcag 158733
>gb|AC091202.3| Drosophila melanogaster 3L BAC RP98-30A3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171209 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gaatctgaagctgaagctga 420 |||||||||||||||||||| Sbjct: 144474 gaatctgaagctgaagctga 144455
>dbj|AK132739.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4922504I05 product:hypothetical IQ calmodulin-binding region/Glutamic acid-rich region profile containing protein, full insert sequence Length = 1128 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 250 tgaagaaactgaagctgaagctga 273 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 145 tgaagaaactgaagctgaagctga 168
>gb|AC069407.2| Drosophila melanogaster 3L BAC RP98-30I5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 183714 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gaatctgaagctgaagctga 420 |||||||||||||||||||| Sbjct: 16017 gaatctgaagctgaagctga 15998
>gb|AC091387.2| Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone BACR13P15, complete sequence Length = 171222 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gaatctgaagctgaagctga 420 |||||||||||||||||||| Sbjct: 25610 gaatctgaagctgaagctga 25591
>dbj|AK016688.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933406G04 product:hypothetical IQ calmodulin-binding region/Glutamic acid-rich region profile containing protein, full insert sequence Length = 1124 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 246 tgaagaaactgaagctgaagctga 269 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 141 tgaagaaactgaagctgaagctga 164
>dbj|AK018835.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700012F17 product:hypothetical IQ calmodulin-binding region containing protein, full insert sequence Length = 1126 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 248 tgaagaaactgaagctgaagctga 271 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 142 tgaagaaactgaagctgaagctga 165
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tctctttcttctccctccga 287 |||||||||||||||||||| Sbjct: 19989411 tctctttcttctccctccga 19989430
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ttcttttttgaagaatctga 408 |||||||||||||||||||| Sbjct: 5187318 ttcttttttgaagaatctga 5187299
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gcagaagcttttcttcagaa 310 |||||||||||||||||||| Sbjct: 27157659 gcagaagcttttcttcagaa 27157678
>gb|AC092160.5| Homo sapiens BAC clone RP11-471N11 from 2, complete sequence Length = 113984 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 agtgaaagatttcttctgtt 198 |||||||||||||||||||| Sbjct: 102548 agtgaaagatttcttctgtt 102567
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ttcttttttgaagaatctga 408 |||||||||||||||||||| Sbjct: 54040 ttcttttttgaagaatctga 54021
>dbj|AB073164.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:T2N12 Length = 87081 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 ccgtcttctcattctttttt 397 |||||||||||||||||||| Sbjct: 22984 ccgtcttctcattctttttt 23003
>dbj|AK068028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131L14, full insert sequence Length = 2693 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gcagaagcttttcttcagaa 310 |||||||||||||||||||| Sbjct: 347 gcagaagcttttcttcagaa 366
>gb|AE003817.3| Drosophila melanogaster chromosome 2R, section 33 of 73 of the complete sequence Length = 265472 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 gaatctgaagctgaagctga 420 |||||||||||||||||||| Sbjct: 197576 gaatctgaagctgaagctga 197595
>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete sequence Length = 264966 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gaatctgaagctgaagctga 420 |||||||||||||||||||| Sbjct: 257410 gaatctgaagctgaagctga 257391
>gb|AC005643.1|AC005643 Drosophila melanogaster, chromosome 2R, region 50C5-50C8, P1 clone DS02972, complete sequence Length = 80389 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gaatctgaagctgaagctga 420 |||||||||||||||||||| Sbjct: 47289 gaatctgaagctgaagctga 47270
>gb|BC049549.1| Mus musculus IQ motif containing F3, mRNA (cDNA clone MGC:58130 IMAGE:6774389), complete cds Length = 1153 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 246 tgaagaaactgaagctgaagctga 269 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 141 tgaagaaactgaagctgaagctga 164
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tctctttcttctccctccga 287 |||||||||||||||||||| Sbjct: 20274390 tctctttcttctccctccga 20274409
>gb|AC004349.1|AC004349 Drosophila melanogaster DNA sequence (P1 DS04327 (D251)), complete sequence Length = 81602 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gaatctgaagctgaagctga 420 |||||||||||||||||||| Sbjct: 26913 gaatctgaagctgaagctga 26894
>ref|NM_026645.2| Mus musculus IQ motif containing F3 (Iqcf3), mRNA Length = 1153 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 246 tgaagaaactgaagctgaagctga 269 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tgaagaatctgaagctgaagctga 420 ||||||| |||||||||||||||| Sbjct: 141 tgaagaaactgaagctgaagctga 164
>gb|AC122380.4| Mus musculus BAC clone RP23-476C23 from 10, complete sequence Length = 210627 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ttcttcagaaggattcctgt 320 |||||||||||||||||||| Sbjct: 73307 ttcttcagaaggattcctgt 73326
>gb|AC151298.3| Mus musculus BAC clone RP23-7F9 from chromosome 17, complete sequence Length = 198349 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 ttctcattcttttttgaaga 402 |||||||||||||||||||| Sbjct: 57449 ttctcattcttttttgaaga 57468
>emb|AL606824.13| Mouse DNA sequence from clone RP23-9G13 on chromosome 11, complete sequence Length = 247743 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 atctgaagctgaagctgagctcgt 426 |||||||||||||||||| ||||| Sbjct: 94748 atctgaagctgaagctgacctcgt 94725
>dbj|AB038993.1| Rattus norvegicus neuron specific enolase gene, 5' flanking region Length = 2715 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 ttcttctttccaaaactctg 469 |||||||||||||||||||| Sbjct: 918 ttcttctttccaaaactctg 899 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,250,205 Number of Sequences: 3902068 Number of extensions: 6250205 Number of successful extensions: 162974 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 162649 Number of HSP's gapped (non-prelim): 324 length of query: 534 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 511 effective length of database: 17,143,297,704 effective search space: 8760225126744 effective search space used: 8760225126744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
