ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain L... 33 0.34
2ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 30 1.7
3ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 28 8.3

>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)|
          Length = 367

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 76  SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 252
           S CG+H   T+ ++  KG  +H A F      +C  CK  +     FA++  K   R +
Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210



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>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
           (Metalloprotease and disintegrin dentritic antigen
           marker) (MADDAM)
          Length = 956

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 119 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 274
           +E E SS+ LS+ RGI      +S  S+++ PLP    + +   IYRS + +
Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169



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>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
          Length = 920

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 119 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRS 262
           ++ ++SS+ LS+ RGI       S  S+I+ P+P+      + RIYRS
Sbjct: 121 RDVDESSVTLSTCRGIRGLIIVRSNLSYIIEPVPN---SDSQHRIYRS 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,643,509
Number of Sequences: 219361
Number of extensions: 670591
Number of successful extensions: 1156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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