ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24m17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADH1_PICST (O00097) Alcohol dehydrogenase 1 (EC 1.1.1.1) (Alcoho... 33 1.1
2PAPPA_MOUSE (Q8R4K8) Pappalysin-1 precursor (EC 3.4.24.79) (Preg... 30 7.2
3Y14K_CSMV (P18920) Hypothetical 14.5 kDa protein 30 7.2
4PAPPA_HUMAN (Q13219) Pappalysin-1 precursor (EC 3.4.24.79) (Preg... 30 7.2
5MOK12_SCHPO (Q9UUL4) Cell wall alpha-1,3-glucan synthase mok12 (... 30 9.4

>ADH1_PICST (O00097) Alcohol dehydrogenase 1 (EC 1.1.1.1) (Alcohol|
           dehydrogenase I) (ADH 2)
          Length = 348

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +1

Query: 130 ICMERINHWRALWPLQHRI-----NPSPGLFRSHGSRDVXWDLPSEGGSTLVCNALLVCF 294
           +C   ++ W+  WPL  ++     +   G+    GS    W+L    G   +  + L C 
Sbjct: 43  VCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVGIGSNVTGWELGDYAGIKWLNGSCLNC- 101

Query: 295 HLYCQYSCRPDC 330
             +CQ+S  P+C
Sbjct: 102 -EFCQHSDEPNC 112



to top

>PAPPA_MOUSE (Q8R4K8) Pappalysin-1 precursor (EC 3.4.24.79) (Pregnancy-associated|
            plasma protein-A) (PAPP-A) (Insulin-like growth
            factor-dependent IGF-binding protein 4 protease)
            (IGF-dependent IGFBP-4 protease) (IGFBP-4ase)
          Length = 1624

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 361  YHNPGSDMSDSNQACKNTGNTDGSKPRGHCIP 266
            YH PGS      +A K     DGS   G C+P
Sbjct: 1378 YHVPGSSRKSKKRAFKTQCTQDGSWQEGTCVP 1409



to top

>Y14K_CSMV (P18920) Hypothetical 14.5 kDa protein|
          Length = 140

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
 Frame = +1

Query: 220 SRDVXWDLPSEGGS--------TLVCNALLV--CFHLYCQYSCRPDCYRTYHFLDYGMSA 369
           SR    + PS G S         LVC A +V  C  ++   +C  DC   Y   DYG   
Sbjct: 37  SRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACILVFLYKTCIADCITQYRLTDYGCHT 96

Query: 370 SS 375
           S+
Sbjct: 97  SA 98



to top

>PAPPA_HUMAN (Q13219) Pappalysin-1 precursor (EC 3.4.24.79) (Pregnancy-associated|
            plasma protein-A) (PAPP-A) (Insulin-like growth
            factor-dependent IGF-binding protein 4 protease)
            (IGF-dependent IGFBP-4 protease) (IGFBP-4ase)
          Length = 1628

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 361  YHNPGSDMSDSNQACKNTGNTDGSKPRGHCIP 266
            YH PGS      +A K     DGS   G C+P
Sbjct: 1382 YHVPGSSRKSKKRAFKTQCTQDGSWQEGACVP 1413



to top

>MOK12_SCHPO (Q9UUL4) Cell wall alpha-1,3-glucan synthase mok12 (EC 2.4.1.183)|
          Length = 2352

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
 Frame = +3

Query: 258  EHFGMQCPLGLLPSVLPVFLQA*LLSDISLPGLW---------YVCLIASAISLELIDAY 410
            ++ G   PL LLP V+PV +    L +    GLW          VC I + I  ++   Y
Sbjct: 1308 DYHGALAPLYLLPEVIPVAVS---LHNAEFQGLWPLRTSAELECVCSIFN-IEKDICTKY 1363

Query: 411  TQL-HLF*LQHCCDASHNNAQTYP*GCLAA*SKPPVSQELTYYKTFMSFLLCQGSPN 578
             Q  H+F L H    S+        G +A  S     Q L+ Y  F S +   G PN
Sbjct: 1364 VQFGHVFNLLHSI-ISYVRKHQGGYGVVAV-SDKYSKQTLSRYPIFWSLVHISGLPN 1418


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,103,636
Number of Sequences: 219361
Number of extensions: 2358234
Number of successful extensions: 5944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5942
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top