>gb|AC149720.2| Bos taurus BAC CH240-248M14 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 180339

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 40     aaaaagcagacactttacactgtgatgtttatgg 73
              ||||||||||||||||| ||| | ||||||||||
Sbjct: 146414 aaaaagcagacactttatactttcatgtttatgg 146381

>gb|AC068241.7| Mus musculus chromosome 10, clone RP23-48L1, complete sequence
          Length = 218191

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 556   ttctgtgtcaaggatctccgaa 577
             ||||||||||||||||||||||
Sbjct: 27309 ttctgtgtcaaggatctccgaa 27330

>gb|AC099603.15| Mus musculus chromosome 12, clone RP23-333M19, complete sequence
          Length = 206836

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 270   atgcaatgccctcttggtttgcttcc 295
             |||||||||||||||||| |||||||
Sbjct: 57409 atgcaatgccctcttggtatgcttcc 57434

>gb|AC142499.9| Mus musculus strain C57BL/6J clone rp23-333m15, complete sequence
          Length = 215706

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 556    ttctgtgtcaaggatctccgaa 577
              ||||||||||||||||||||||
Sbjct: 142792 ttctgtgtcaaggatctccgaa 142813

>emb|Z98949.1|HS125H2 Human DNA sequence from clone CTA-125H2 on chromosome 22q11-12, complete
              sequence
          Length = 173513

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 33     ttggagcaaaaagcagacactt 54
              ||||||||||||||||||||||
Sbjct: 100489 ttggagcaaaaagcagacactt 100510

>emb|AJ310932.1|HSA310932 Homo sapiens MYO18B gene for myosin heavy chain, exons 1-44
          Length = 288888

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 33     ttggagcaaaaagcagacactt 54
              ||||||||||||||||||||||
Sbjct: 193070 ttggagcaaaaagcagacactt 193091

>gb|AC007961.32| Mus musculus strain 129S6/SvEvTac clone rp21-594l4 map 10, complete
              sequence
          Length = 180585

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 556    ttctgtgtcaaggatctccgaa 577
              ||||||||||||||||||||||
Sbjct: 173571 ttctgtgtcaaggatctccgaa 173592

>dbj|AK133457.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933439K18 product:unclassifiable, full
           insert sequence
          Length = 1143

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 556 ttctgtgtcaaggatctccgaa 577
           ||||||||||||||||||||||
Sbjct: 586 ttctgtgtcaaggatctccgaa 565

>gb|AC148017.3| Mus musculus BAC clone RP23-56O18 from chromosome 18, complete sequence
          Length = 152497

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   tccttcccctggattgttccg 209
             |||||||||||||||||||||
Sbjct: 91366 tccttcccctggattgttccg 91386

>gb|AC113176.8| Mus musculus chromosome 3, clone RP23-453A2, complete sequence
          Length = 217606

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    ttggagcaaaaagcagacact 53
             |||||||||||||||||||||
Sbjct: 24215 ttggagcaaaaagcagacact 24235

>emb|AL121881.35|HSJ171K16 Human DNA sequence from clone RP1-171K16 on chromosome Xq26.3-27.3
              Contains the SPANXD gene for SPANX family member D, the
              SPANXA1 gene for sperm proteisperm protein associated with
              the nucleus X chromosome family member A1, the SPANXA2 gene
              for SPANX family member A2, the 3' end of a novel gene, and
              a novel gene, complete sequence
          Length = 185551

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     ttggagcaaaaagcagacact 53
              |||||||||||||||||||||
Sbjct: 143746 ttggagcaaaaagcagacact 143726

>gb|AC159969.4| Mus musculus chromosome 3, clone RP23-301F20, complete sequence
          Length = 187487

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     ttggagcaaaaagcagacact 53
              |||||||||||||||||||||
Sbjct: 136998 ttggagcaaaaagcagacact 136978

>gb|AC165246.2| Mus musculus BAC clone RP24-220A15 from chromosome 9, complete sequence
          Length = 161208

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    gccttctgaaggtgggagca 262
              ||||||||||||||||||||
Sbjct: 126695 gccttctgaaggtgggagca 126676

>gb|AC124738.5| Mus musculus BAC clone RP23-344C15 from chromosome 14, complete sequence
          Length = 204590

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    cagtattcttgcaggcctga 326
              ||||||||||||||||||||
Sbjct: 176394 cagtattcttgcaggcctga 176375

>gb|AC132244.3| Mus musculus BAC clone RP24-419I10 from chromosome 14, complete sequence
          Length = 185581

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    cagtattcttgcaggcctga 326
              ||||||||||||||||||||
Sbjct: 140700 cagtattcttgcaggcctga 140719

>ref|NM_002417.2| Homo sapiens antigen identified by monoclonal antibody Ki-67
           (MKI67), mRNA
          Length = 12515

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 tttacttgtgttggatttgt 135
           ||||||||||||||||||||
Sbjct: 411 tttacttgtgttggatttgt 392

>emb|AL603888.9| Human DNA sequence from clone RP11-735A5 on chromosome 1 Contains part of
              the gene for microtubule associated testis specific
              serine/threonine protein kinase (MAST205) and a novel
              pseudogene, complete sequence
          Length = 158562

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 553    ttcttctgtgtcaaggatct 572
              ||||||||||||||||||||
Sbjct: 100069 ttcttctgtgtcaaggatct 100050

>emb|AL355529.21| Human DNA sequence from clone RP11-85C15 on chromosome 10 Contains the
             5' end of the MKI67 gene for antigen identified by
             monoclonal antibody Ki-67 and three CpG islands, complete
             sequence
          Length = 140466

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tttacttgtgttggatttgt 135
             ||||||||||||||||||||
Sbjct: 16588 tttacttgtgttggatttgt 16607

>emb|AL135788.11| Human DNA sequence from clone RP11-352G21 on chromosome 9p23-24.3,
             complete sequence
          Length = 96203

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 512   ggtgagccaagagcttacatacta 535
             ||||| ||||||||||||||||||
Sbjct: 29724 ggtgacccaagagcttacatacta 29701

>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    cagtattcttgcaggcctga 326
              ||||||||||||||||||||
Sbjct: 351718 cagtattcttgcaggcctga 351737

>gb|AC106798.3| Homo sapiens chromosome 5 clone RP11-434D9, complete sequence
          Length = 172966

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     gtgatgtttatggcttttct 80
              ||||||||||||||||||||
Sbjct: 168297 gtgatgtttatggcttttct 168316

>gb|AC112206.3| Homo sapiens chromosome 5 clone RP11-83M16, complete sequence
          Length = 185290

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    gtgatgtttatggcttttct 80
             ||||||||||||||||||||
Sbjct: 67744 gtgatgtttatggcttttct 67763

>gb|BC029772.1| Mus musculus RIKEN cDNA D630014A15 gene, mRNA (cDNA clone
           IMAGE:4947691), partial cds
          Length = 1898

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 atagtttttacttgtgttgg 129
           ||||||||||||||||||||
Sbjct: 879 atagtttttacttgtgttgg 860

>dbj|AK085344.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
            library, clone:D630014A15 product:unclassifiable, full
            insert sequence
          Length = 3513

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  atagtttttacttgtgttgg 129
            ||||||||||||||||||||
Sbjct: 2930 atagtttttacttgtgttgg 2911

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 112      agtttttacttgtgttggat 131
                ||||||||||||||||||||
Sbjct: 24559851 agtttttacttgtgttggat 24559832



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 112      agtttttacttgtgttggat 131
                ||||||||||||||||||||
Sbjct: 24550667 agtttttacttgtgttggat 24550648

>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0040H10
          Length = 173301

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   agtttttacttgtgttggat 131
             ||||||||||||||||||||
Sbjct: 43044 agtttttacttgtgttggat 43025



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   agtttttacttgtgttggat 131
             ||||||||||||||||||||
Sbjct: 33860 agtttttacttgtgttggat 33841

>dbj|AK120647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155H07, full
            insert sequence
          Length = 4804

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 112  agtttttacttgtgttggat 131
            ||||||||||||||||||||
Sbjct: 1005 agtttttacttgtgttggat 1024

>dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-315O6, complete
              sequence
          Length = 214483

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     ttggagcaaaaagcagacacttta 56
              |||||||||||||| |||||||||
Sbjct: 138268 ttggagcaaaaagcggacacttta 138245

>gb|AC122534.5| Mus musculus BAC clone RP24-539A10 from 9, complete sequence
          Length = 174471

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    gccttctgaaggtgggagca 262
              ||||||||||||||||||||
Sbjct: 127153 gccttctgaaggtgggagca 127172

>gb|AC168068.3| Mus musculus BAC clone RP23-99G15 from chromosome 8, complete sequence
          Length = 237728

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   atagtttttacttgtgttgg 129
             ||||||||||||||||||||
Sbjct: 95700 atagtttttacttgtgttgg 95719

>emb|X65551.1|HSMKI67A H.sapiens mki67a mRNA (short type) for antigen of monoclonal
           antibody Ki-67
          Length = 11435

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 tttacttgtgttggatttgt 135
           ||||||||||||||||||||
Sbjct: 411 tttacttgtgttggatttgt 392

>emb|X65550.1|HSMKI67 H.sapiens mki67a mRNA (long type) for antigen of monoclonal
           antibody Ki-67
          Length = 12515

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 tttacttgtgttggatttgt 135
           ||||||||||||||||||||
Sbjct: 411 tttacttgtgttggatttgt 392

>emb|X74107.1|HSAMAK67 H.sapiens gene for antigen of the monoclonal antibody Ki-67
          Length = 29965

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  tttacttgtgttggatttgt 135
            ||||||||||||||||||||
Sbjct: 3317 tttacttgtgttggatttgt 3298


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,732,347
Number of Sequences: 3902068
Number of extensions: 5732347
Number of successful extensions: 100586
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100502
Number of HSP's gapped (non-prelim): 84
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)