ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25b12 |
|---|---|
| Clone Library Name | barley_pub |
>SPG16_HUMAN (Q8N0X2) Sperm-associated antigen 16 protein (PF20 protein homolog)| Length = 631 Score = 26.9 bits (58), Expect(2) = 1.9 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%) Frame = -1 Query: 210 HEQGDLLGTIARQQNIQFKSICEGDCTV----HSVGQWT 106 H GD L T + ++ +C GDC + HS W+ Sbjct: 403 HPSGDKLATSSGDTTVKLWDLCTGDCILTFEGHSRAVWS 441 Score = 22.3 bits (46), Expect(2) = 1.9 Identities = 8/21 (38%), Positives = 11/21 (52%) Frame = -3 Query: 76 LDKQKTVTDDNRLACECAIHG 14 LDK + D N C C ++G Sbjct: 456 LDKTSKIWDVNSERCRCTLYG 476
>SYK_ORYSA (Q6F2U9) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 602 Score = 30.0 bits (66), Expect = 3.0 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = -1 Query: 438 WMPLRGKNMGSMVDKRVLILQEKALPSYFHGYLNLEINHQIQMIFK 301 W P G+N ++K VL QE Y YL+L +NH+++ IFK Sbjct: 234 WAPGMGRN----IEKYVLRDQETR---YRQRYLDLMVNHEVRHIFK 272
>ACHA7_BOVIN (P54131) Neuronal acetylcholine receptor protein, alpha-7 subunit| precursor Length = 499 Score = 29.6 bits (65), Expect = 3.9 Identities = 18/39 (46%), Positives = 23/39 (58%) Frame = +3 Query: 327 LFPDLGNHGNSLVRPSLAESGPFCLPLTPYFSLSMASII 443 L+ DL + N L RP +S LPLT YFSLS+ I+ Sbjct: 26 LYKDLVKNYNPLERPVANDS----LPLTVYFSLSLLQIM 60
>VSGP_EBOZM (P60170) Pre-small/secreted glycoprotein precursor (pre-sGP)| [Contains: Small/secreted glycoprotein (sGP); Delta-peptide] Length = 364 Score = 29.3 bits (64), Expect = 5.1 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = -2 Query: 308 FSRTYGVSYVKLTGVCQDPQKR*ASTDMTSKSSMNKGTCWVRLQGSKIYNSSLSVKETAL 129 F RT+ + GV + + + D T +R G + + ++ + Sbjct: 27 FQRTFSIPL----GVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSA 82 Query: 128 CTQWG--SGLVHHLVNFDATRQAENCY 54 +WG SG+ +VN++A AENCY Sbjct: 83 TKRWGFRSGVPPKVVNYEAGEWAENCY 109
>VSGP_EBOZ5 (P60171) Pre-small/secreted glycoprotein precursor (pre-sGP)| [Contains: Small/secreted glycoprotein (sGP); Delta-peptide] Length = 364 Score = 29.3 bits (64), Expect = 5.1 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = -2 Query: 308 FSRTYGVSYVKLTGVCQDPQKR*ASTDMTSKSSMNKGTCWVRLQGSKIYNSSLSVKETAL 129 F RT+ + GV + + + D T +R G + + ++ + Sbjct: 27 FQRTFSIPL----GVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSA 82 Query: 128 CTQWG--SGLVHHLVNFDATRQAENCY 54 +WG SG+ +VN++A AENCY Sbjct: 83 TKRWGFRSGVPPKVVNYEAGEWAENCY 109
>VSGP_EBOG4 (O11458) Pre-small/secreted glycoprotein precursor (pre-sGP)| [Contains: Small/secreted glycoprotein (sGP); Delta-peptide] Length = 364 Score = 29.3 bits (64), Expect = 5.1 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = -2 Query: 308 FSRTYGVSYVKLTGVCQDPQKR*ASTDMTSKSSMNKGTCWVRLQGSKIYNSSLSVKETAL 129 F RT+ + GV + + + D T +R G + + ++ + Sbjct: 27 FQRTFSIPL----GVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSA 82 Query: 128 CTQWG--SGLVHHLVNFDATRQAENCY 54 +WG SG+ +VN++A AENCY Sbjct: 83 TKRWGFRSGVPPKVVNYEAGEWAENCY 109
>VGP_EBOZM (Q05320) Structural glycoprotein precursor (Virion spike| glycoprotein) [Contains: GP1; GP2] Length = 676 Score = 29.3 bits (64), Expect = 5.1 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = -2 Query: 308 FSRTYGVSYVKLTGVCQDPQKR*ASTDMTSKSSMNKGTCWVRLQGSKIYNSSLSVKETAL 129 F RT+ + GV + + + D T +R G + + ++ + Sbjct: 27 FQRTFSIPL----GVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSA 82 Query: 128 CTQWG--SGLVHHLVNFDATRQAENCY 54 +WG SG+ +VN++A AENCY Sbjct: 83 TKRWGFRSGVPPKVVNYEAGEWAENCY 109
>VGP_EBOZ5 (P87666) Structural glycoprotein precursor (Virion spike| glycoprotein) [Contains: GP1; GP2] Length = 676 Score = 29.3 bits (64), Expect = 5.1 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = -2 Query: 308 FSRTYGVSYVKLTGVCQDPQKR*ASTDMTSKSSMNKGTCWVRLQGSKIYNSSLSVKETAL 129 F RT+ + GV + + + D T +R G + + ++ + Sbjct: 27 FQRTFSIPL----GVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSA 82 Query: 128 CTQWG--SGLVHHLVNFDATRQAENCY 54 +WG SG+ +VN++A AENCY Sbjct: 83 TKRWGFRSGVPPKVVNYEAGEWAENCY 109
>VGP_EBOG4 (O11457) Structural glycoprotein precursor (Virion spike| glycoprotein) [Contains: GP1; GP2] Length = 676 Score = 29.3 bits (64), Expect = 5.1 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = -2 Query: 308 FSRTYGVSYVKLTGVCQDPQKR*ASTDMTSKSSMNKGTCWVRLQGSKIYNSSLSVKETAL 129 F RT+ + GV + + + D T +R G + + ++ + Sbjct: 27 FQRTFSIPL----GVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSA 82 Query: 128 CTQWG--SGLVHHLVNFDATRQAENCY 54 +WG SG+ +VN++A AENCY Sbjct: 83 TKRWGFRSGVPPKVVNYEAGEWAENCY 109
>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) Length = 1692 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 385 QDPFVYH*PHIFPSQWHPLYPPEP 456 Q P + PH+FPSQ + PP P Sbjct: 1028 QQPLPFQHPHLFPSQAPGILPPPP 1051
>PBX4_HUMAN (Q9BYU1) Pre-B-cell leukemia transcription factor 4 (Homeobox| protein PBX4) (Fragment) Length = 330 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 342 GNHGNSLVRPSLAESGPFCLPLTPYFSLSMASIIS 446 GNH + L PS SGPF LP L++ ++ S Sbjct: 253 GNHASCLSTPSSGSSGPFPLPSAGDAFLTLRTLAS 287
>Y1672_METJA (Q59066) Hypothetical protein MJ1672| Length = 800 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/71 (26%), Positives = 35/71 (49%) Frame = -1 Query: 342 LNLEINHQIQMIFKDLWGIIR*ANWSLSRSTEEISIN*HDIKIVHEQGDLLGTIARQQNI 163 L + H Q I DL GI+R A+W S E + ++++++ + L +I Sbjct: 64 LEIVKEHHNQKIKDDLIGIVRLADWLSSGERREPKGDPENVEVLNTEEQKLLSI------ 117 Query: 162 QFKSICEGDCT 130 F+++C G+ T Sbjct: 118 -FETVCIGELT 127 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,718,941 Number of Sequences: 219361 Number of extensions: 1492370 Number of successful extensions: 3712 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3595 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3706 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
