ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24m12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_SOYBN (Q39817) Calnexin homolog precursor 89 9e-18
2CALX_PEA (O82709) Calnexin homolog precursor 81 1e-15
3CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 80 3e-15
4CALX_HELTU (Q39994) Calnexin homolog precursor 78 1e-14
5CALX1_ARATH (P29402) Calnexin homolog 1 precursor 69 9e-12
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 32 1.3
7KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 31 2.2
8ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 2.8
9FA35A_MOUSE (Q3UEN2) Protein FAM35A 29 8.2
10LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 ... 29 8.2
11KRA52_HUMAN (Q701N4) Keratin-associated protein 5-2 (Keratin-ass... 29 8.2

>CALX_SOYBN (Q39817) Calnexin homolog precursor|
          Length = 546

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -3

Query: 498 FQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFG 319
           FQKK+F +LYKIADIPFL  +K KI DLIEK EKQPN+TI IL +V V+ V++ FR IFG
Sbjct: 437 FQKKVFDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFG 496

Query: 318 G 316
           G
Sbjct: 497 G 497



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>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 38/60 (63%), Positives = 47/60 (78%)
 Frame = -3

Query: 495 QKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 316
           QKK F +LYKIADI FL   K KII++IEKGEKQPN+TI I+ SV ++ V++ FR IFGG
Sbjct: 443 QKKAFDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGG 502



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>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 36/82 (43%), Positives = 52/82 (63%)
 Frame = -3

Query: 498 FQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFG 319
           +QKK+F +LYK+ADI FL  YK KI++LIEK E QPN+TI +L S+ ++ +++ F+ IFG
Sbjct: 430 YQKKVFDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFG 489

Query: 318 GXXXXXXXXXXXXXXXPSATEA 253
           G                S +EA
Sbjct: 490 GAKAKVEKKKPETAAETSTSEA 511



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>CALX_HELTU (Q39994) Calnexin homolog precursor|
          Length = 540

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 32/60 (53%), Positives = 48/60 (80%)
 Frame = -3

Query: 495 QKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 316
           QK +F VLYKIAD+PFL  +K+K+++LIEK E QPNITI ++ S+ V++ ++L + +FGG
Sbjct: 432 QKAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGG 491



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>CALX1_ARATH (P29402) Calnexin homolog 1 precursor|
          Length = 530

 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 29/61 (47%), Positives = 44/61 (72%)
 Frame = -3

Query: 498 FQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFG 319
           +QK +F +L K+AD+ FL  YK KI +LIEK E+QPN+TI +L ++ V+  ++  + IFG
Sbjct: 428 YQKVVFDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFG 487

Query: 318 G 316
           G
Sbjct: 488 G 488



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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -2

Query: 373 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 248
           +G  C   CYC+  +    Q G+  C A    R C  +  C+ S C
Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222



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>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 364 SCCHPCYCALQNHFRWQEGSGTCEARCC 281
           SCC PCYC+         GS  C++ CC
Sbjct: 89  SCCKPCYCSSGC------GSSCCQSSCC 110



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>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 349 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 254
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338



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>FA35A_MOUSE (Q3UEN2) Protein FAM35A|
          Length = 898

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -3

Query: 465 IADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIF 322
           + D+P  +P K+  ++ +E  + QP+I +   A + V+ VTVL   ++
Sbjct: 542 LKDLPQRQPQKMNTVEFVELEQLQPDILVH--AVLRVVDVTVLTEALY 587



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>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)|
          Length = 1786

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -2

Query: 379 FDFGLSCCHPCYCALQNHFRWQEGSGTCEARCCGEEAQCH 260
           F FG S C PC C LQ         G+  A C     QCH
Sbjct: 811 FGFGPSGCKPCECHLQ---------GSVNAFCNPVTGQCH 841



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>KRA52_HUMAN (Q701N4) Keratin-associated protein 5-2 (Keratin-associated protein|
           5.2) (Ultrahigh sulfur keratin-associated protein 5.2)
           (Keratin-associated protein 5-8) (Keratin-associated
           protein 5.8)
          Length = 177

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 364 SCCHPCYCALQNHFRWQEGSGTCEARCCGEEAQCHGSRC 248
           SCC PC C+         GS  C++ CC +   C  S C
Sbjct: 117 SCCKPCCCSSGC------GSSCCQSSCC-KPCCCQSSCC 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,049,760
Number of Sequences: 219361
Number of extensions: 934868
Number of successful extensions: 2963
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2958
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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