>UN93L_ARATH (Q94AA1) UNC93-like protein|
          Length = 464

 Score =  110 bits (275), Expect = 4e-24
 Identities = 54/82 (65%), Positives = 65/82 (79%)
 Frame = -1

Query: 640 WLLLFYSPMEGLLGAAIPLFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQS 461
           WLLL Y    G+LG A PL + A+ G+GDG+LNTQ+SALL LLF+   E AFAQLKVWQS
Sbjct: 330 WLLLGYRQTSGVLGTAYPLIMAAILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQS 389

Query: 460 GAIAVIFFLSPSITLQAMLILM 395
            AIA++FFLSP I+LQAMLI+M
Sbjct: 390 AAIAIVFFLSPYISLQAMLIVM 411

>UN93A_BRARE (Q5SPF7) UNC93 homolog A|
          Length = 465

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 34/92 (36%), Positives = 48/92 (52%)
 Frame = -1

Query: 634 LLFYSPMEGLLGAAIPLFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGA 455
           LL++ P    L  AI     ALWG+ D V  TQ +AL G+LF   KEAAFA  ++W+S  
Sbjct: 336 LLYWKPHPDQL--AIFFVFPALWGMADAVWQTQTNALYGILFAKNKEAAFANYRMWESLG 393

Query: 454 IAVIFFLSPSITLQAMLILMATSLAISFGLFL 359
             + F  S  I L   + +    LA++   +L
Sbjct: 394 FVIAFAYSTFICLSTKIYIALAVLALTMVTYL 425

>UN93L_DROME (Q9Y115) UNC93-like protein|
          Length = 538

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = -1

Query: 580 IGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGAIAVIFFLSPSITLQAMLI 401
           +  LWGVGD V  TQ++ L GLLF   KEAAF+  ++W+S    + +  + ++  Q  L 
Sbjct: 399 MSGLWGVGDAVWQTQINGLYGLLFRRNKEAAFSNYRLWESAGFVIAYAYATTLCTQMKLY 458

Query: 400 LMATSLAISFGLFLLLTLVVEK 335
           ++   L +    ++++ ++  K
Sbjct: 459 ILLAVLTLGCIGYVIVEILYRK 480

>UN93A_HUMAN (Q86WB7) UNC93 homolog A (UNC-93A protein) (HmUNC-93A)|
          Length = 457

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
 Frame = -1

Query: 634 LLFYSPMEGLLGAAIPLFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGA 455
           LL + P    L  A+      LWGV D V  TQ +AL G+LFE  KEAAFA  ++W++  
Sbjct: 337 LLLWRPRADHL--AVFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALG 394

Query: 454 IAVIFFLSPSITLQAMLILMATSLAISFGLFLLLTLVVEK-PSTIRA*GESN 302
             + F  S  + +   L ++   L+++   + L+  V  K P    A G+ N
Sbjct: 395 FVIAFGYSMFLCVHVKLYILLGVLSLTMVAYGLVECVESKNPIRPHAPGQVN 446

>UN93A_XENLA (Q6DDL7) UNC93 homolog A|
          Length = 460

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 24/74 (32%), Positives = 42/74 (56%)
 Frame = -1

Query: 595 AIPLFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGAIAVIFFLSPSITL 416
           A+     A+WG+ D +  TQ +AL G+LF++ KEAAFA  ++W+S    + +  S  + +
Sbjct: 349 AVFFIFPAIWGMADAIWQTQTNALYGVLFDEHKEAAFANYRLWESLGFVIAYGYSTFLCV 408

Query: 415 QAMLILMATSLAIS 374
              L ++   L I+
Sbjct: 409 SVKLYILLAVLLIA 422

>UN93B_MOUSE (Q8VCW4) UNC93 homolog B1 (UNC-93B protein)|
          Length = 598

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
 Frame = -1

Query: 634 LLFYSPMEGLLGAA-IPLFIGALWGVGDGVLNTQLSALLGLLFEDV--KEAAFAQLKVWQ 464
           L F++P   +L  + I  F+ ALWGVG  +  T LS LLG+L+ED   ++  F     WQ
Sbjct: 419 LFFWAPAPRVLQHSWIFYFVAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQ 478

Query: 463 SGAIAVIFFLSPSITLQAMLILMATSLAISFGLFL 359
           + AI V+ +L  S+ ++A L ++  +L  +   +L
Sbjct: 479 AVAIFVV-YLGSSLPMKAKLAVLLVTLVAAAASYL 512

>UN93B_HUMAN (Q9H1C4) UNC93 homolog B1 (UNC-93B protein) (hUNC93B1)|
          Length = 597

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
 Frame = -1

Query: 640 WLLLFYSPMEGLLGAAIPLFIGA-LWGVGDGVLNTQLSALLGLLFEDV--KEAAFAQLKV 470
           ++L F++P+  +L  +  L++ A LWGVG  +  T LS LLG+L+ED   ++  F     
Sbjct: 417 FILFFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHW 476

Query: 469 WQSGAIAVIFFLSPSITLQAMLILMATSL 383
           WQ+ AI  + +L  S+ ++A L ++  +L
Sbjct: 477 WQAVAIFTV-YLGSSLHMKAKLAVLLVTL 504

>UN93A_MOUSE (Q710D3) UNC93 homolog A (UNC-93A protein)|
          Length = 458

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = -1

Query: 592 IPLF--IGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGAIAVIFFLSPSIT 419
           +P+F  +  LWG+ D V  TQ +AL G+LFE+ KE AFA  ++ ++    + F  S  + 
Sbjct: 348 LPVFFVLSGLWGMSDAVWQTQNNALFGVLFEENKEPAFANYRLGEAIGFVIAFGYSSFLC 407

Query: 418 LQAMLILMATSLAIS 374
           +   L ++   L+++
Sbjct: 408 VSTKLYILLGVLSLA 422

>UNC93_CAEEL (Q93380) Putative potassium channel regulatory protein unc-93|
           (Uncoordinated protein 93)
          Length = 705

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
 Frame = -1

Query: 637 LLLFYSPMEGLLGAA---IPLFIGALWGVGDGVLNTQLSAL-LGLLFEDVKEAAFAQLKV 470
           LL+  + M   L AA   I   + A+WG+ DGV NTQ++   + L+     + AF + + 
Sbjct: 575 LLMIVTLMVWPLNAADTQIFYVVAAMWGMADGVWNTQINGFWVALVGRQSLQFAFTKYRF 634

Query: 469 WQSGAIAVIFFLSPSITLQAMLILMATSLAISFGLFLLL 353
           W+S  IA+ F L   +T++  L++    L +    FL +
Sbjct: 635 WESLGIAIGFALIRHVTVEIYLLITFFMLLLGMCGFLAI 673

>FBX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7 activity) (MoKA)|
          Length = 1194

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +3

Query: 396 IKISMACSVMLGLKKKMTAMAPDCQTFNCAKAASLTSSNSNPSNALNCVFKTPSPTPHKA 575
           IK  M  +  +  KKK   + P C + + + AAS   + S+PS A      + SP   + 
Sbjct: 683 IKADMKAARDVSEKKKSKDVYPSCSSSSSSTAASTAGNASSPSTA------SQSPDFART 736

Query: 576 PINSGIAAPSSPSI 617
             +SG + PS P +
Sbjct: 737 VTSSGSSEPSPPEV 750

>NU5M_CROLA (P34195) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 612

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
 Frame = -1

Query: 610 GLLGAAIPLFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVW-----QSGAIAV 446
           G  G  I  F+   W  G    NT  +AL   ++  V +        W      S  I  
Sbjct: 148 GWEGVGIMSFLLIGWWYGRADANT--AALQAWIYNRVGDIGLIMSMAWLAMNLNSWEIQQ 205

Query: 445 IFFLSPS--ITLQAM-LILMATSLAISFGLFLLLTLVVEKPSTIRA 317
           IFFLS    +TL  M LIL AT  +  FGL   L   +E P+ + A
Sbjct: 206 IFFLSKDFDMTLPLMGLILAATGKSAQFGLHPWLPAAMEGPTPVSA 251

>NU5M_RABIT (O79437) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 603

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = -1

Query: 610 GLLGAAIPLFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVW-----QSGAIAV 446
           G  G  I  F+   W  G    NT  +AL  +L+  + +  F     W      +  +  
Sbjct: 143 GWEGVGIMSFLLIGWWHGRTDANT--AALQAILYNRIGDIGFIMALAWFAINLNTWELQQ 200

Query: 445 IFFLSPSITLQAM--LILMATSLAISFGLFLLLTLVVEKPSTIRA 317
           IF L  +IT+  +  LIL AT  +  FGL   L   +E P+ + A
Sbjct: 201 IFILDNNITILPLMGLILAATGKSAQFGLHPWLPSAMEGPTPVSA 245

>RWDD3_HUMAN (Q9Y3V2) RWD domain-containing protein 3|
          Length = 195

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 422 HTTSHAYLDGYVTRHLLWPVPVTYPCCREAINHQSLRRIQFQC 294
           HT +  ++D  +   L++ +PV YP C   I+  S +  + QC
Sbjct: 38  HTKAEGFMDADIPLELVFHLPVNYPSCLPGISINSEQLTRAQC 80

>NU5M_SHEEP (O78756) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 606

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = -1

Query: 610 GLLGAAIPLFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVW-----QSGAIAV 446
           G  G  I  F+   W  G    NT  +AL  +L+  + +  F     W      +  +  
Sbjct: 143 GWEGVGIMSFLLIGWWYGRTDANT--AALQAILYNRIGDIGFILAMAWFLINLNTWDLQQ 200

Query: 445 IFFLSPSITLQAM--LILMATSLAISFGLFLLLTLVVEKPSTIRA 317
           IF L+P+ +   +  LIL AT  +  FGL   L   +E P+ + A
Sbjct: 201 IFMLNPNDSNLPLMGLILAATGKSAQFGLHPWLPSAMEGPTPVSA 245

>ENV_HV1Z3 (P12491) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120)]
          Length = 460

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 465 CQTFNCAKAASLTSSNSNPSNALNCVFKTPSPTPHK 572
           C T NC    + T++N+  +   NC FK P+    K
Sbjct: 125 CVTLNCIDVKNSTNNNTEEATITNCSFKVPTELKDK 160

>NU5M_ORNAN (Q36459) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 604

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 19/127 (14%)
 Frame = -1

Query: 640 WLLLFYSPMEGLLGA--AIPLFIGALWGVGDGVLNTQL------------SALLGLLFED 503
           +LL+F   M  L+ A     LFIG  W  G G+++  L            +AL  +L+  
Sbjct: 121 YLLIFLITMLTLISANNLFQLFIG--WE-GVGIMSFMLIGWWHARTDANTAALQAILYNR 177

Query: 502 VKEAAFAQLKVW-----QSGAIAVIFFLSPSITLQAMLILMATSLAISFGLFLLLTLVVE 338
           + +  F     W      S     +F L  ++     LIL AT  +  FGL   L   +E
Sbjct: 178 IGDIGFILAMAWFLIHTNSWEFQQMFLLHTNLLPLLGLILAATGKSAQFGLHPWLPFAME 237

Query: 337 KPSTIRA 317
            P+ + A
Sbjct: 238 GPTPVSA 244

>AMDR_EMENI (P15699) Acetamidase regulatory protein|
          Length = 765

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 417 SVMLGLKKKMTAMAPDCQTFNCAKAASLTSSNSNPSNALNCVFKTPSPTPHKAPINSGIA 596
           S +L L ++   +  D +T    +    ++ ++N +N+     K  S  PH A INS  A
Sbjct: 583 STILRLFEESRRLQEDLRTTTSDRPRRFSNLSNNSTNSPASQQKNTSGIPHLANINSSDA 642

Query: 597 A-PSSPSI 617
             PS+PSI
Sbjct: 643 TPPSAPSI 650

>UPPP_SYMTH (Q67LG6) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 276

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -1

Query: 568 WGVGDGVLNTQLSALLGLLFEDVKEAAFAQ 479
           WG+   VL T   A+ GLL EDV EA F Q
Sbjct: 96  WGI---VLGTVPGAIFGLLMEDVVEAVFRQ 122

>FA86A_MOUSE (Q3UZW7) Protein FAM86A|
          Length = 335

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
 Frame = -2

Query: 393 LRHSPSPLACSCYLPLLSRSHQ--PSEP---------EANPISVCRQCRRHHMVSVTNSM 247
           ++H PS     C+L  L + H+  P+EP         E        QC R +++   NS 
Sbjct: 61  VQHGPSVKYARCFLSKLIKKHEAVPTEPLDALYEALAEVLMTQESTQCHRSYLLPSGNS- 119

Query: 246 HNHTVVLTSDMKLRRKSIIIHHGATPLQHAHYAIHLSRCLLE 121
                     + L   + I+ HG T L     A++L+   +E
Sbjct: 120 ----------VTLSESTAIVSHGTTGLVTWDAALYLAEWAIE 151

>PDE4C_DROME (Q9W4S9) cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms N/G|
           (EC 3.1.4.17) (Learning/memory process protein) (Protein
           dunce)
          Length = 983

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 187 PSRRNAITTCTLCYSSQPL--FAGGLK*RGSRQNVGSESRPYIWFXCHFYYVMLQESXTX 14
           PS+R++++T T   SS P    +G  + RGSR +            CH YY + Q S + 
Sbjct: 106 PSKRHSLSTTTSNSSSAPYRYLSGSSRSRGSRGD------------CHEYYQLQQHSSSL 153

Query: 13  FNYN 2
            N N
Sbjct: 154 SNGN 157

>TXLNB_MOUSE (Q8VBT1) Beta-taxilin (Muscle-derived protein 77)|
          Length = 685

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 456 APDCQTFNCAKAASLTSSNSNPSNALNCVFKTPSPTPHKAPINSGIAAPSSPSIG 620
           A    T +C  A +   S   P+        TP P PHK   N+   AP SP+ G
Sbjct: 577 ATPAPTASCTPAEAELQSQGLPAE------NTPGPKPHKPEANTSGQAPLSPAQG 625

>NU5M_HIPAM (Q9ZZY1) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 594

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
 Frame = -1

Query: 640 WLLLFYSPMEGLLGA--AIPLFIGALW-GVG----------DGVLNTQLSALLGLLFEDV 500
           +LLLF   M  L+ A     LFIG  W GVG           G  +   +A+  +L+  +
Sbjct: 120 YLLLFLITMMILVTANNLFQLFIG--WEGVGIMSFLLIGWWHGRTDANTAAIQAILYNRI 177

Query: 499 KEAAFAQLKVW-----QSGAIAVIFFLSPSITLQAM--LILMATSLAISFGLFLLLTLVV 341
            +  F     W      +  +  IF ++P+ +   +  LIL AT  +  FGL   L   +
Sbjct: 178 GDVGFIMAMAWFLSNLNTWDMQQIFMINPTHSNLPLMGLILAATGKSAQFGLHPWLPSAM 237

Query: 340 EKPSTIRA 317
           E P+ + A
Sbjct: 238 EGPTPVSA 245

>VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1)|
          Length = 523

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 462 DCQTFNCAKAASLTSSNSNPSNALNCVFKTPSPTPHKAPINSGI 593
           D Q  N     S +   ++P N  N +++  SP PH  PI+  I
Sbjct: 255 DTQILNIDSVFSSSPITNDPENTDNLLYQNWSPQPHSIPISQPI 298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,497,069
Number of Sequences: 219361
Number of extensions: 1980022
Number of successful extensions: 5995
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5986
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)