ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24m09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clo... 494 e-137
2gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete ... 492 e-136
3gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete ... 492 e-136
4emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clo... 482 e-133
5gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete ... 379 e-102
6gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, comple... 349 3e-93
7emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clo... 341 7e-91
8emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clo... 333 2e-88
9emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clo... 325 4e-86
10gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, comple... 313 2e-82
11emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin 222 4e-55
12dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds 80 4e-12
13dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds 74 3e-10
14gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete seq... 42 0.90
15emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 ... 42 0.90
16emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, c... 42 0.90
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.90
18dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.90
19gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, com... 40 3.5
20emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4... 40 3.5
21gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete ... 40 3.5
22gb|AC022395.4| Homo sapiens chromosome 10 clone RP11-354M20, com... 40 3.5
23gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3... 40 3.5
24gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Canc... 40 3.5
25gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cance... 40 3.5
26gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O23, c... 40 3.5
27gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small he... 40 3.5
28gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small he... 40 3.5
29gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P1... 40 3.5
30gb|AC155325.5| Mus musculus 10 BAC RP24-86C24 (Roswell Park Canc... 40 3.5
31gb|AC005879.3|AC005879 citb_287_c_20, complete sequence 40 3.5
32gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complet... 40 3.5
33gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338)... 40 3.5
34gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3... 40 3.5 
>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3)
          Length = 491

 Score =  494 bits (249), Expect = e-137
 Identities = 264/270 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatngattgntcgnggtgactcttattggaacgagggaaaaaacagaaatacataacta 60
           |||| ||||  ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aaatagattcatcgtggtgactcttattggaacgagggaaaaaacagaaatacataacta 399

                                                                       
Query: 61  agatgatacatttgcttcgatctggtgatggtatcaagattgttgaacagaaaatgacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 398 agatgatacatttgcttcgatctggtgatggtatcaagattgttgaacagaaaatgaaaa 339

                                                                       
Query: 121 aacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaa 279

                                                                       
Query: 181 tgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatt 219

                                         
Query: 241 tcatctcttggccacgggaaacattgtcca 270
           ||||||||||||||||||||||||||||||
Sbjct: 218 tcatctcttggccacgggaaacattgtcca 189
to top
>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940
          Length = 663

 Score =  492 bits (248), Expect = e-136
 Identities = 251/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 538

                                                                       
Query: 81  tctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaa 478

                                                                       
Query: 141 tcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattacag 200
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 477 tcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacag 418

                                                                       
Query: 201 aaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaa 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaa 358

                       
Query: 261 acattgtccatg 272
           ||||||||||||
Sbjct: 357 acattgtccatg 346
to top
>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348
          Length = 608

 Score =  492 bits (248), Expect = e-136
 Identities = 251/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 538

                                                                       
Query: 81  tctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaa 478

                                                                       
Query: 141 tcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattacag 200
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 477 tcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacag 418

                                                                       
Query: 201 aaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaa 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaa 358

                       
Query: 261 acattgtccatg 272
           ||||||||||||
Sbjct: 357 acattgtccatg 346
to top
>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3)
          Length = 544

 Score =  482 bits (243), Expect = e-133
 Identities = 264/272 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatngattgntcgnggtgactcttattggaacgagggaaaaaacagaaatacataacta 60
           |||| ||||  ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaatagattcatcgtggcgactcttattggaacgagggaaaaaacagaaatacataacta 485

                                                                       
Query: 61  agatgatacatttgcttcgatctggtgatggtatcaagattgttgaacagaaaatgacaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agatgatacatttgcttcgatgtggtgatggtatcaagattgttgaacagaaaatgacaa 425

                                                                       
Query: 121 aacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 424 aacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaagagactgaa 365

                                                                       
Query: 181 tgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatt 305

                                           
Query: 241 tcatctcttggccacgggaaacattgtccatg 272
           ||||||||||||||||||||||||||||||||
Sbjct: 304 tcatctcttggccacgggaaacattgtccatg 273
to top
>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872
          Length = 540

 Score =  379 bits (191), Expect = e-102
 Identities = 194/195 (99%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatag 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cgatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatag 481

                                                                       
Query: 138 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcatta 197
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 480 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcatta 421

                                                                       
Query: 198 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 361

                          
Query: 258 gaaacattgtccatg 272
           |||||||||||||||
Sbjct: 360 gaaacattgtccatg 346
to top
>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds
          Length = 2259

 Score =  349 bits (176), Expect = 3e-93
 Identities = 182/184 (98%)
 Strand = Plus / Minus

                                                                        
Query: 79   gatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccataga 138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 gatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccataga 2178

                                                                        
Query: 139  aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattac 198
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2177 aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 2118

                                                                        
Query: 199  agaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggg 258
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2117 agaaacgggcacatgcgttgctgcagagtcccatgtcaaatttcatctcttggccacggg 2058

                
Query: 259  aaac 262
            ||||
Sbjct: 2057 aaac 2054
to top
>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4)
          Length = 658

 Score =  341 bits (172), Expect = 7e-91
 Identities = 249/273 (91%), Gaps = 2/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatngattgntcgnggtgactcttattggaacgagggaaaaaacagaaatacataacta 60
           |||| ||||  ||| || ||| ||||||||||| ||||||||| ||||||| ||||| ||
Sbjct: 599 aaatagattcatcgtggcgacccttattggaacaagggaaaaa-cagaaatgcataagta 541

                                                                       
Query: 61  agatgatacatttgcttcgat-ctggtgatggtatcaagattgttgaacagaaaatgaca 119
           ||||||||||||| ||||||| | | |||||||||||||||| || || | |||||||||
Sbjct: 540 agatgatacatttccttcgatacagctgatggtatcaagattattcaagacaaaatgaca 481

                                                                       
Query: 120 aaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactga 179
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 480 atacgaccttggccatagaaatcatgcacaagaaggcatgattaggcttcaacagactga 421

                                                                       
Query: 180 atgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaat 239
           |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgactgcaccatcattacaaaaacgggcacatgcgttgctgcagagtcccatgtcgaat 361

                                            
Query: 240 ttcatctcttggccacgggaaacattgtccatg 272
           |||||||||||||||||| ||||||||||||||
Sbjct: 360 ttcatctcttggccacggaaaacattgtccatg 328
to top
>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4)
          Length = 637

 Score =  333 bits (168), Expect = 2e-88
 Identities = 248/273 (90%), Gaps = 2/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatngattgntcgnggtgactcttattggaacgagggaaaaaacagaaatacataacta 60
           |||| ||||  ||| || ||||||||||||||| |||||||||  | |||||||||| ||
Sbjct: 592 aaatagattcatcgtggcgactcttattggaacaagggaaaaag-acaaatacataagta 534

                                                                       
Query: 61  agatgatacatttgcttcgat-ctggtgatggtatcaagattgttgaacagaaaatgaca 119
           |||||||||||| ||||| || | | |||||||||||||||| || || | |||||||||
Sbjct: 533 agatgatacattggcttccatacagctgatggtatcaagattattcaagacaaaatgaca 474

                                                                       
Query: 120 aaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactga 179
           | |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 473 atacgaccatggccatagaaatcatgcacaagaaggcatgattaggcttcaacagactga 414

                                                                       
Query: 180 atgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaat 239
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atgactgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaat 354

                                            
Query: 240 ttcatctcttggccacgggaaacattgtccatg 272
           |||||||||||||||||| ||||||||||||||
Sbjct: 353 ttcatctcttggccacggaaaacattgtccatg 321
to top
>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2)
          Length = 453

 Score =  325 bits (164), Expect = 4e-86
 Identities = 247/273 (90%), Gaps = 2/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatngattgntcgnggtgactcttattggaacgagggaaaaaacagaaatacataacta 60
           |||| ||||  ||| || ||| ||||||||||| ||||||||| ||||||| ||||| ||
Sbjct: 419 aaatagattcatcgtggcgacccttattggaacaagggaaaaa-cagaaatgcataagta 361

                                                                       
Query: 61  agatgatacatttgcttcgat-ctggtgatggtatcaagattgttgaacagaaaatgaca 119
           ||||||||||||| ||||||| | | |||||||||||||||| || || | |||||||||
Sbjct: 360 agatgatacatttccttcgatacagctgatggtatcaagattattcaagacaaaatgaca 301

                                                                       
Query: 120 aaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactga 179
           | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 300 atacgaccttggccatagaaatcatgcacaagaaggcatgattaggattcaacagactga 241

                                                                       
Query: 180 atgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaat 239
           |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgactgcaccatcattacaaaaacgggcacatgcgttgctgcagagtcccatgtcgaat 181

                                            
Query: 240 ttcatctcttggccacgggaaacattgtccatg 272
           ||||||||||||||| || ||||||||||||||
Sbjct: 180 ttcatctcttggccatggaaaacattgtccatg 148
to top
>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds
          Length = 2406

 Score =  313 bits (158), Expect = 2e-82
 Identities = 238/263 (90%), Gaps = 2/263 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaatngattgntcgnggtgactcttattggaacgagggaaaaaacagaaatacataacta 60
            |||| ||||  ||| || ||||||| ||||||| |||||||||  | |||||||||| ||
Sbjct: 2292 aaatagattcatcgtggcgactcttgttggaacaagggaaaaag-acaaatacataagta 2234

                                                                        
Query: 61   agatgatacatttgcttcgat-ctggtgatggtatcaagattgttgaacagaaaatgaca 119
            |||||||||||| ||||| || | | |||||||||||||||| || || | |||||||||
Sbjct: 2233 agatgatacattggcttccatacagctgatggtatcaagattattcaagacaaaatgaca 2174

                                                                        
Query: 120  aaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactga 179
            | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2173 atacgaccttggccatagaaatcatgcacaagaaggcatgattaggcttcaacagactga 2114

                                                                        
Query: 180  atgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaat 239
            |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 atgactgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaat 2054

                                   
Query: 240  ttcatctcttggccacgggaaac 262
            |||||||||||||||||| ||||
Sbjct: 2053 ttcatctcttggccacggaaaac 2031
to top
>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin
          Length = 414

 Score =  222 bits (112), Expect = 4e-55
 Identities = 112/112 (100%)
 Strand = Plus / Minus

                                                                       
Query: 161 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 355

                                                               
Query: 221 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtccatg 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtccatg 303
to top
>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds
          Length = 678

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 118/144 (81%)
 Strand = Plus / Minus

                                                                       
Query: 113 aatgacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaac 172
           |||| |||||||||| ||||||||||||| | || | |||  ||||||||||||  | ||
Sbjct: 558 aatggcaaaacgaccatggccatagaaataaggcacgagagtgcatgattaggccccgac 499

                                                                       
Query: 173 agactgaatgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccat 232
           |||  || ||||  |||| |  |||||||||||| ||||||||||| |||||| |  |||
Sbjct: 498 agatggattgacggcacccttgttacagaaacggacacatgcgttgttgcagacttgcat 439

                                   
Query: 233 gtcgaatttcatctcttggccacg 256
           |||||  |||||||||||||||||
Sbjct: 438 gtcgatgttcatctcttggccacg 415
to top
>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds
          Length = 641

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                       
Query: 124 gaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatga 183
           ||||| ||||| ||||||||||| |||||  ||||||||| ||||  | |||  ||||||
Sbjct: 496 gacctcggccaaagaaatcatgcacaagagtgcatgattaagcttggaaagatggaatga 437

                                                                       
Query: 184 catcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttca 243
           |  |||| |  |||||||||||  ||||| | ||| ||||||||  |||||||| |||||
Sbjct: 436 cggcacccttgttacagaaacgaacacattctttgttgcagagtagcatgtcgattttca 377

                                        
Query: 244 tctcttggccacgggaaacattgtccatg 272
           ||||||||||| |   |||||||||||||
Sbjct: 376 tctcttggccatgaataacattgtccatg 348
to top
>gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete sequence
          Length = 58609

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 39   aaaaaacagaaatacataact 59
            |||||||||||||||||||||
Sbjct: 8230 aaaaaacagaaatacataact 8210
to top
>emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 in linkage group 14,
             complete sequence
          Length = 137130

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 180   atgacatcaccatcattacagaaac 204
             |||||||||||||||||||| ||||
Sbjct: 27486 atgacatcaccatcattacataaac 27462
to top
>emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, complete sequence
          Length = 201461

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 180    atgacatcaccatcattacagaaac 204
              |||||||||||||||||||| ||||
Sbjct: 188699 atgacatcaccatcattacataaac 188723
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 95      caagattgttgaacagaaaat 115
               |||||||||||||||||||||
Sbjct: 6740764 caagattgttgaacagaaaat 6740784
to top
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    caagattgttgaacagaaaat 115
             |||||||||||||||||||||
Sbjct: 61817 caagattgttgaacagaaaat 61837
to top
>gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, complete sequence
          Length = 206087

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   atgacatcaccatcattaca 199
             ||||||||||||||||||||
Sbjct: 32100 atgacatcaccatcattaca 32119
to top
>emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE
          Length = 114414

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aaatacataactaagatgat 67
             ||||||||||||||||||||
Sbjct: 70952 aaatacataactaagatgat 70971
to top
>gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete sequence
          Length = 109548

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  aaatacataactaagatgat 67
           ||||||||||||||||||||
Sbjct: 645 aaatacataactaagatgat 664
to top
>gb|AC022395.4| Homo sapiens chromosome 10 clone RP11-354M20, complete sequence
          Length = 193669

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aactaagatgatacatttgc 75
             ||||||||||||||||||||
Sbjct: 96493 aactaagatgatacatttgc 96512
to top
>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence
          Length = 177721

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     aagattgttgaacagaaaat 115
              ||||||||||||||||||||
Sbjct: 113658 aagattgttgaacagaaaat 113677
to top
>gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206425

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   atgacatcaccatcattaca 199
             ||||||||||||||||||||
Sbjct: 52069 atgacatcaccatcattaca 52050
to top
>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 116556

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   cagactgaatgacatcacca 191
             ||||||||||||||||||||
Sbjct: 64821 cagactgaatgacatcacca 64802
to top
>gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O23, complete sequence
          Length = 34686

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    acagaaatacataactaaga 63
             ||||||||||||||||||||
Sbjct: 19747 acagaaatacataactaaga 19766
to top
>gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small heat shock protein
            (vis1) gene, complete cds
          Length = 2257

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 20   actcttattggaacgagggaaaaa 43
            |||||||||||||||| |||||||
Sbjct: 1736 actcttattggaacgaaggaaaaa 1713
to top
>gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small heat shock protein
            (vis1) gene, complete cds
          Length = 2224

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 20   actcttattggaacgagggaaaaa 43
            |||||||||||||||| |||||||
Sbjct: 1703 actcttattggaacgaaggaaaaa 1680
to top
>gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P18, complete sequence
          Length = 217898

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     aaaaaacagaaatacataac 58
              ||||||||||||||||||||
Sbjct: 161134 aaaaaacagaaatacataac 161153
to top
>gb|AC155325.5| Mus musculus 10 BAC RP24-86C24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 171402

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   atgacatcaccatcattaca 199
             ||||||||||||||||||||
Sbjct: 34723 atgacatcaccatcattaca 34704
to top
>gb|AC005879.3|AC005879 citb_287_c_20, complete sequence
          Length = 190982

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    aactaagatgatacatttgc 75
             ||||||||||||||||||||
Sbjct: 32396 aactaagatgatacatttgc 32377
to top
>gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complete sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     aaaaaacagaaatacataac 58
              ||||||||||||||||||||
Sbjct: 101064 aaaaaacagaaatacataac 101083
to top
>gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338) gene, complete
           cds
          Length = 1047

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 126 ccttggccatagaaatcatgccca 149
           |||||||||| |||||||||||||
Sbjct: 862 ccttggccattgaaatcatgccca 839
to top
>gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3p, complete sequence
          Length = 179814

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   aagattgttgaacagaaaat 115
            ||||||||||||||||||||
Sbjct: 3697 aagattgttgaacagaaaat 3716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,613,699
Number of Sequences: 3902068
Number of extensions: 2613699
Number of successful extensions: 55371
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55301
Number of HSP's gapped (non-prelim): 62
length of query: 272
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 250
effective length of database: 17,147,199,772
effective search space: 4286799943000
effective search space used: 4286799943000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top