ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd24m05 |
|---|---|
| Clone Library Name | barley_pub |
>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1068 Score = 37.7 bits (86), Expect = 0.031 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = -2 Query: 619 SPKSSPFSNLPDM--SPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAYQS 446 +P SPF ++ SP+++S H++YISP K + L+P S Y G S Sbjct: 960 APPLSPFPHIKQQPGSPRRISQQHSIYISP---HKNGSGLTPRSALLYKFNG-------S 1009 Query: 445 SSEDLAAINNCLNYTTRRINTRI 377 S+ L INN + +R R+ Sbjct: 1010 PSKSLKDINNMIRQGEQRTKKRV 1032
>RBL1_MOUSE (Q64701) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1063 Score = 37.7 bits (86), Expect = 0.031 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Frame = -2 Query: 643 NHNSQIPGSPKSSPFSNLPDM--SPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIG 470 ++ I +P SPF ++ SP+++S H++Y+SP K A L+P S Y G Sbjct: 947 SNQDHIMDAPPLSPFPHIKQQPGSPRRISQQHSLYVSP---HKNGAGLTPRSALLYKFNG 1003 Query: 469 ESTHAYQSSSEDLAAINNCLNYTTRRINTRI 377 S S+ L INN + ++ R+ Sbjct: 1004 -------SPSKSLKDINNMIRQGEQKTKKRV 1027
>RBL2_RAT (O55081) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) (PPAR-alpha-interacting complex protein 128) (PRIC128) Length = 1135 Score = 36.2 bits (82), Expect = 0.092 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Frame = -2 Query: 637 NSQIPGSPKSSPFSNLPDMSPKKV--SSSHNVYISPLRQTKKDALLSPSSRSFY 482 NSQ+ +P SP+ + SP++V S SH +YISP K +A+LSP + FY Sbjct: 1022 NSQMD-TPPLSPYPFVRTGSPRRVQLSQSHPIYISP---HKNEAMLSPREKIFY 1071
>ZIP1_SCHPO (Q10424) Transcription factor zip1| Length = 330 Score = 32.7 bits (73), Expect = 1.0 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = -2 Query: 628 IPGSPKSSPFSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIG-ESTHAY 452 IP S SS +N P +P + N + +PL L S SS S + G +S +A Sbjct: 193 IPTSEASSSINNTPLQAPVSSFADQNAFTNPLSTFASPDLASVSSPSLSSYKGAQSPNAN 252 Query: 451 QSSSEDLAAINNCLNYTTRRINT 383 ++ +AI RR NT Sbjct: 253 SKRTKATSAIRTAAEEDKRRRNT 275
>PPID_ECOLI (P0ADY1) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase| D) (Rotamase D) Length = 623 Score = 32.3 bits (72), Expect = 1.3 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 15/130 (11%) Frame = -2 Query: 658 PDXKKN----HNSQIPGSPKSSP---FSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSP 500 PD KN Q+ G KSS L D+ P KV S V + K + L Sbjct: 324 PDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALD- 382 Query: 499 SSRSFYACIGESTHAYQSSSEDLAAINNCLN--------YTTRRINTRINFDMVSDSVVA 344 ++YA + + A + +E LA ++ + +NF V+D++ Sbjct: 383 ---AYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFN 439 Query: 343 GSLGQPNGVP 314 G L NG P Sbjct: 440 GGLVGENGAP 449
>PPID_ECOL6 (P0ADY2) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase| D) (Rotamase D) Length = 623 Score = 32.3 bits (72), Expect = 1.3 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 15/130 (11%) Frame = -2 Query: 658 PDXKKN----HNSQIPGSPKSSP---FSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSP 500 PD KN Q+ G KSS L D+ P KV S V + K + L Sbjct: 324 PDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALD- 382 Query: 499 SSRSFYACIGESTHAYQSSSEDLAAINNCLN--------YTTRRINTRINFDMVSDSVVA 344 ++YA + + A + +E LA ++ + +NF V+D++ Sbjct: 383 ---AYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFN 439 Query: 343 GSLGQPNGVP 314 G L NG P Sbjct: 440 GGLVGENGAP 449
>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC| 2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related kinase, arginine/serine-rich) (CrkRS) Length = 1490 Score = 32.0 bits (71), Expect = 1.7 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 4/176 (2%) Frame = -2 Query: 658 PDXKKNHNSQIPGSPKSSPFSNLPDMSPKK--VSSSHNVYISPLRQTKKDALLSPSSRSF 485 P K + +S+ SP + + D+SP + SS+++ Y T + +SP + Sbjct: 223 PHRKWSDSSKQDDSPSGASYGQDYDLSPSRSHTSSNYDSYKKSPGSTSRRQSVSPPYKE- 281 Query: 484 YACIGESTHAYQSSSEDLAAINNCLNYTTRRINTRINFDMVSDSVVAGSLGQPNGVPASS 305 AYQSS+ + + + R + S S +G P G SS Sbjct: 282 -------PSAYQSSTRSPSPYSRRQRSVSPYSRRRSSSYERSGSY-SGRSPSPYGRRRSS 333 Query: 304 DPAGSFSFLSRKGNPGPDS*ANK*ASPVYS--SRTHGRPSVLLNKWVNSNASTVHL 143 P S LSR P S ++ SP YS S +H + ++ +S+ S V L Sbjct: 334 SPFLSKRSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRL 389
>YBF4_YEAST (P34219) Hypothetical 59.2 kDa protein in PTC3-SAS3 intergenic| region Length = 525 Score = 31.2 bits (69), Expect = 2.9 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Frame = -2 Query: 649 KKNHNSQIPGSPKSSPFSNL--PDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYA 479 + + NS P P S S + P MSP+++S+S +V+ P Q + + SP+ ++ +A Sbjct: 316 RSSFNSHAPTEPISRRASLVVSPYMSPRRLSTSQSVHYHPQHQYYLNPIASPNCKTDHA 374
>RBL2_MOUSE (Q64700) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) Length = 1135 Score = 30.8 bits (68), Expect = 3.8 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = -2 Query: 637 NSQIPGSPKSSPFSNLPDMSPKKV--SSSHNVYISPLRQTKKDALLSPSSRSFY 482 NSQ +P SP+ + SP++V S SH +YISP +A+ SP + FY Sbjct: 1022 NSQTD-TPPLSPYPFVRTGSPRRVQLSQSHPIYISP---HNNEAMPSPREKIFY 1071
>DOF41_ARATH (Q9M161) Dof zinc finger protein DOF4.1 (AtDOF4.1)| Length = 294 Score = 30.4 bits (67), Expect = 5.0 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -2 Query: 649 KKNHNSQIPGSPKSSPFSNLPDMSPKKV--SSSHNVYISPLRQTKKDALLSPSS 494 +KN P S SS NLPD++P V SS+ + S Q D LS SS Sbjct: 118 RKNKKLPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFSS 171
>KCY1_BORGA (Q662N3) Cytidylate kinase 1 (EC 2.7.4.14) (CK 1) (Cytidine| monophosphate kinase 1) (CMP kinase 1) Length = 221 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +1 Query: 445 SSDKHGCFHRYKHKNSSNLVKAMHPSWF--DAEEKYKHYGKMRLSLGTYLVD 594 +S K RYK +N + ++ + + D +K K YGK++LS G + +D Sbjct: 145 ASVKVRALRRYKQRNGNETLEELERTLKIRDDVDKRKQYGKLKLSKGVFYLD 196
>KCY1_BORBU (O51154) Cytidylate kinase 1 (EC 2.7.4.14) (CK 1) (Cytidine| monophosphate kinase 1) (CMP kinase 1) Length = 221 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +1 Query: 445 SSDKHGCFHRYKHKNSSNLVKAMHPSWF--DAEEKYKHYGKMRLSLGTYLVD 594 +S K RYK +N + ++ + + D +K K YGK++LS G + +D Sbjct: 145 ASVKVRALRRYKQRNGNETLEELERTLKRRDDVDKKKQYGKLKLSKGVFYLD 196
>GIDB_LEGPL (Q5WSS3) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 129 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 296 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>GIDB_LEGPH (Q5ZRJ1) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 129 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 296 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>GIDB_LEGPA (Q5X0Z7) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 129 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 296 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>YDZ5_SCHPO (O13712) Protein C14C4.05c in chromosome I| Length = 844 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -2 Query: 586 DMSPKKVSSSHNVYISPLRQTKKDALLSPSS-RSFYACIGESTHAYQSSSEDLAAINNCL 410 ++ PK S S +VY SP++ + +PS+ S +S+ +Y S++ +NN + Sbjct: 261 NLKPKFTSRSSSVYASPIKSSLNSLECNPSNLLSVRKNFQQSSDSYLKSNKSFDQLNNLV 320 Query: 409 NYTT 398 +T Sbjct: 321 GLST 324
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 30.0 bits (66), Expect = 6.6 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 445 SSDKHGCFHRYKHKNSSNLVKAMHPSWFDAEEKYKHYGK 561 S +KH + KHK+ S K H S D ++K+KH K Sbjct: 37 SQNKHSRHKKKKHKHRSKHKKHKHSSEEDRDKKHKHKHK 75
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 30.0 bits (66), Expect = 6.6 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 445 SSDKHGCFHRYKHKNSSNLVKAMHPSWFDAEEKYKHYGK 561 S +KH + KHK+ S K H S D ++K+KH K Sbjct: 36 SQNKHSRHKKKKHKHRSKHKKHKHSSEEDKDKKHKHKHK 74
>4ET_MOUSE (Q9EST3) Eukaryotic translation initiation factor 4E transporter| (eIF4E transporter) (4E-T) (Eukaryotic translation initiation factor 4E nuclear import factor 1) Length = 983 Score = 30.0 bits (66), Expect = 6.6 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = -2 Query: 655 DXKKNHNSQIPGSPKSSPFSNLPDMSPKKVSSSHNVYISPLRQTKKDAL---LSPSSRSF 485 D +K H S P S +SSP +L S S P + K+D L LSP RSF Sbjct: 61 DPEKWHASLYPASGRSSPVESLKKESESDRPSLVRRIADPRERVKEDDLDVVLSPQRRSF 120
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 29.6 bits (65), Expect = 8.6 Identities = 27/118 (22%), Positives = 51/118 (43%) Frame = -2 Query: 628 IPGSPKSSPFSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAYQ 449 + S SS S+ SP SSS SP + + S SS S + S+ + Sbjct: 127 VSSSSVSSTTSSSSSSSPS--SSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184 Query: 448 SSSEDLAAINNCLNYTTRRINTRINFDMVSDSVVAGSLGQPNGVPASSDPAGSFSFLS 275 SSS ++ ++ + ++ ++ + + S + S + +SS P+ S SF++ Sbjct: 185 SSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFIT 242
>VIT_ACITR (Q90243) Vitellogenin precursor (VTG) [Contains: Lipovitellin I| (LVI); Phosvitin (PV); Lipovitellin II (LVII)] (Fragment) Length = 1677 Score = 29.6 bits (65), Expect = 8.6 Identities = 31/127 (24%), Positives = 46/127 (36%) Frame = -2 Query: 649 KKNHNSQIPGSPKSSPFSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIG 470 +K H+ Q+P S SS S+ S SSS + LS S R Sbjct: 1160 QKKHHKQLPSSSSSSSSSSSGSNSSSSSSSSSSSSSRSHNHRNNTRTLSKSKRYQNNNNS 1219 Query: 469 ESTHAYQSSSEDLAAINNCLNYTTRRINTRINFDMVSDSVVAGSLGQPNGVPASSDPAGS 290 S+ SSSE++ Y R ++ F G+ + +SS + S Sbjct: 1220 SSSSGSSSSSEEIQKNPEIFAYRFRSHRDKLGFQ--------NKRGRMSSSSSSSSSSSS 1271 Query: 289 FSFLSRK 269 S L+ K Sbjct: 1272 QSTLNSK 1278
>CCNT2_HUMAN (O60583) Cyclin-T2| Length = 730 Score = 29.6 bits (65), Expect = 8.6 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = -2 Query: 655 DXKKNHNSQIPGSPKSSPFSNLPDMSPKKVSSSHN-VYISPL 533 D NH+S++ S KSS S+ S K+ SSHN V+ PL Sbjct: 625 DASHNHHSKMSKSSKSSGSSSSSSSSVKQYISSHNSVFNHPL 666
>PARM1_MOUSE (Q923D3) Protein PARM-1 precursor| Length = 296 Score = 29.6 bits (65), Expect = 8.6 Identities = 16/48 (33%), Positives = 30/48 (62%) Frame = -2 Query: 637 NSQIPGSPKSSPFSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSPSS 494 +SQ P S +SP ++L + V+SSHN ++ ++ T +A ++P+S Sbjct: 141 SSQAPTSATTSPATSLSESLSASVTSSHNSTVANIQPT--EAPMAPAS 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,831,869 Number of Sequences: 219361 Number of extensions: 2237911 Number of successful extensions: 6241 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5636 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6238 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
